Wall clock time and date at job start Tue Mar 31 2020 07:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50690 * 109.47432 * 2 1 4 4 C 1.38169 * 119.97509 * 264.97720 * 3 2 1 5 5 C 1.38712 * 119.94276 * 180.02562 * 4 3 2 6 6 O 1.35907 * 120.04976 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99492 * 179.97438 * 6 5 4 8 8 C 1.38749 * 119.89286 * 359.97438 * 5 4 3 9 9 C 1.38124 * 119.94411 * 359.75643 * 8 5 4 10 10 C 1.38243 * 119.97353 * 85.00070 * 3 2 1 11 11 C 1.50704 * 119.94208 * 359.97438 * 10 3 2 12 12 N 1.46903 * 109.47018 * 80.00328 * 11 10 3 13 13 C 1.47957 * 111.00079 * 170.00106 * 12 11 10 14 14 C 1.53937 * 86.18208 * 222.41605 * 13 12 11 15 15 O 1.42896 * 113.73148 * 269.25755 * 14 13 12 16 16 C 1.50694 * 113.73443 * 138.07827 * 14 13 12 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47958 * 111.00224 * 70.63784 * 12 11 10 25 25 H 1.08996 * 109.47738 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47375 * 300.00319 * 1 2 3 27 27 H 1.09004 * 109.47098 * 59.99868 * 1 2 3 28 28 H 1.09001 * 109.46851 * 239.99641 * 2 1 3 29 29 H 1.09004 * 109.47098 * 120.00132 * 2 1 3 30 30 H 1.07996 * 120.02417 * 359.97438 * 4 3 2 31 31 H 1.09003 * 109.47437 * 59.99933 * 7 6 5 32 32 H 1.09005 * 109.47213 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47433 * 299.99315 * 7 6 5 34 34 H 1.07998 * 120.03057 * 180.02562 * 8 5 4 35 35 H 1.07997 * 119.97566 * 180.26750 * 9 8 5 36 36 H 1.08997 * 109.47128 * 320.00372 * 11 10 3 37 37 H 1.08999 * 109.47288 * 199.99630 * 11 10 3 38 38 H 1.08999 * 113.76060 * 108.09601 * 13 12 11 39 39 H 1.09001 * 113.85944 * 336.74419 * 13 12 11 40 40 H 0.96709 * 114.00030 * 178.09403 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.09003 * 113.76031 * 23.26533 * 24 12 11 43 43 H 1.08999 * 113.76380 * 251.90073 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3613 2.0366 -1.1923 5 6 2.8242 3.3442 -1.1915 6 8 3.1479 3.9523 -2.3630 7 6 3.6172 5.2998 -2.2863 8 6 2.9551 4.0306 0.0072 9 6 2.6197 3.4124 1.1960 10 6 2.1642 2.1066 1.1930 11 6 1.8047 1.4325 2.4920 12 7 2.9092 0.5603 2.9132 13 6 2.6997 0.0679 4.2925 14 6 4.1974 0.3487 4.5104 15 8 5.0404 -0.7672 4.2172 16 6 4.5079 0.9859 5.8403 17 1 3.7099 1.2014 6.5353 18 6 5.8109 1.2939 6.1697 19 7 6.7828 1.0311 5.3235 20 14 6.1956 2.0844 7.8179 21 1 6.1426 3.5622 7.6825 22 1 5.1963 1.6432 8.8238 23 1 7.5541 1.6760 8.2575 24 6 4.0756 1.3570 3.3536 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2588 1.5001 -2.1239 31 1 4.5211 5.3357 -1.6782 32 1 3.8398 5.6647 -3.2891 33 1 2.8494 5.9269 -1.8334 34 1 3.3149 5.0489 0.0104 35 1 2.7174 3.9477 2.1288 36 1 0.9029 0.8359 2.3543 37 1 1.6270 2.1886 3.2568 38 1 2.4386 -0.9890 4.3466 39 1 2.0429 0.6992 4.8911 40 1 5.9843 -0.5862 4.3248 41 1 7.6994 1.2481 5.5552 42 1 3.8213 2.3667 3.6761 43 1 4.9140 1.3301 2.6575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337526711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:32 Heat of formation + Delta-G solvation = -33.366506 kcal Electronic energy + Delta-G solvation = -23728.860464 eV Core-core repulsion = 20354.257623 eV Total energy + Delta-G solvation = -3374.602841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23777 -39.02143 -37.62990 -34.27176 -33.67593 -32.05813 -31.31038 -29.54315 -27.99012 -27.06566 -25.44396 -24.95680 -23.68122 -22.55941 -21.35017 -20.05750 -18.55121 -17.59409 -17.22808 -16.42145 -15.73199 -15.41508 -15.00509 -14.99507 -14.63953 -14.22718 -14.02535 -13.72151 -13.35461 -13.14322 -12.96057 -12.66502 -12.40890 -12.18507 -11.94753 -11.91543 -11.56356 -11.39256 -11.21947 -11.00491 -10.95778 -10.76258 -10.65580 -10.49971 -10.40307 -10.23023 -9.97646 -9.31114 -8.64137 -8.60077 -8.21889 -7.85093 -7.73965 -6.24855 -4.34782 1.53561 1.62570 3.18813 3.26764 3.29781 3.30112 3.89717 4.26018 4.84428 4.91513 4.94029 5.00224 5.06283 5.09585 5.18724 5.27772 5.33626 5.36795 5.50591 5.59159 5.66345 5.83038 5.86985 5.91655 6.02006 6.07202 6.10016 6.18254 6.32437 6.35403 6.40045 6.46485 6.52637 6.64741 6.72530 6.93319 6.98991 7.09462 7.23858 7.38618 7.49631 7.77752 8.00304 8.04129 8.66819 9.35218 9.68105 10.80752 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.004445 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.582697 B = 6297.023604 C = 7326.668894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.020 4.020 4 C -0.154 4.154 5 C 0.119 3.881 6 O -0.322 6.322 7 C 0.029 3.971 8 C -0.213 4.213 9 C -0.070 4.070 10 C -0.099 4.099 11 C 0.058 3.942 12 N -0.470 5.470 13 C 0.007 3.993 14 C 0.244 3.756 15 O -0.572 6.572 16 C -0.538 4.538 17 H 0.064 0.936 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.272 1.272 23 H -0.284 1.284 24 C -0.006 4.006 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.388 0.612 41 H 0.270 0.730 42 H 0.056 0.944 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 5.584 -11.529 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.021 4.021 4 C -0.173 4.173 5 C 0.074 3.926 6 O -0.236 6.236 7 C -0.066 4.066 8 C -0.231 4.231 9 C -0.089 4.089 10 C -0.099 4.099 11 C -0.070 4.070 12 N -0.193 5.193 13 C -0.122 4.122 14 C 0.203 3.797 15 O -0.384 6.384 16 C -0.576 4.576 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.197 1.197 23 H -0.209 1.209 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.243 0.757 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.065 4.768 -12.407 16.088 hybrid contribution 0.817 1.903 1.659 2.654 sum -8.247 6.672 -10.748 15.101 Atomic orbital electron populations 1.21730 0.95160 1.01487 1.01703 1.20639 0.95566 0.92502 1.04221 1.19485 0.95674 0.95661 0.91291 1.20221 1.05833 0.92759 0.98488 1.18939 0.96471 0.92658 0.84486 1.86030 1.80434 1.28139 1.28956 1.22998 0.98918 0.81205 1.03513 1.21099 1.08776 1.00950 0.92314 1.20870 0.96280 0.94428 0.97295 1.19586 1.01869 0.93760 0.94698 1.21587 0.96710 0.95787 0.92960 1.68612 1.03556 1.25477 1.21615 1.24158 0.99212 1.00224 0.88601 1.19744 0.85925 0.83352 0.90718 1.86034 1.23201 1.37712 1.91427 1.21669 0.93344 1.40118 1.02463 0.91743 1.25046 0.96043 0.94632 0.97309 1.69354 1.00547 1.48201 1.35696 0.86441 0.77851 0.79375 0.83443 1.20516 1.19674 1.20913 1.24626 0.92781 0.97060 0.99097 0.92474 0.92583 0.93065 0.91471 0.88376 0.85679 0.92672 0.88591 0.92876 0.85916 0.86022 0.90554 0.94176 0.90665 0.91824 0.75669 0.91925 0.92536 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.75 37.16 0.36 -1.29 16 2 C -0.09 -1.27 5.40 -27.89 -0.15 -1.42 16 3 C -0.02 -0.32 5.13 -104.65 -0.54 -0.85 16 4 C -0.15 -2.30 9.62 -39.43 -0.38 -2.68 16 5 C 0.12 1.76 6.69 -39.22 -0.26 1.50 16 6 O -0.32 -4.32 10.50 -19.45 -0.20 -4.52 16 7 C 0.03 0.27 9.81 101.05 0.99 1.26 16 8 C -0.21 -3.07 9.04 -39.43 -0.36 -3.43 16 9 C -0.07 -1.10 9.48 -39.60 -0.38 -1.48 16 10 C -0.10 -1.62 4.96 -104.60 -0.52 -2.14 16 11 C 0.06 0.98 4.10 -4.97 -0.02 0.96 16 12 N -0.47 -9.63 5.57 -239.69 -1.34 -10.96 16 13 C 0.01 0.14 7.36 -2.77 -0.02 0.12 16 14 C 0.24 6.16 1.44 -90.84 -0.13 6.03 16 15 O -0.57 -15.55 13.48 -35.23 -0.47 -16.03 16 16 C -0.54 -14.31 8.62 -34.44 -0.30 -14.61 16 17 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.07 1.89 5.40 -17.82 -0.10 1.79 16 19 N -0.90 -24.17 11.09 55.43 0.61 -23.55 16 20 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.01 -0.15 6.71 -2.77 -0.02 -0.17 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.66 6.71 -51.93 -0.35 0.31 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 29 H 0.10 1.56 6.59 -51.93 -0.34 1.22 16 30 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 34 H 0.12 1.48 6.30 -52.49 -0.33 1.15 16 35 H 0.12 1.82 8.03 -52.49 -0.42 1.40 16 36 H 0.08 1.18 5.83 -51.93 -0.30 0.88 16 37 H 0.04 0.68 7.55 -51.93 -0.39 0.29 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.06 1.28 7.75 -51.93 -0.40 0.88 16 40 H 0.39 10.77 6.46 45.56 0.29 11.07 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.06 1.29 7.73 -51.93 -0.40 0.89 16 43 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -28.71 346.22 -8.96 -37.67 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -5.94 Total: 13.23 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.81 Total: -16.39 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: -0.72 Total: -34.52 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.68 Total: -20.55 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.71 -8.96 -37.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337526711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.303 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds