Wall clock time and date at job start Tue Mar 31 2020 07:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50690 * 109.47432 * 2 1 4 4 C 1.38169 * 119.97509 * 264.97720 * 3 2 1 5 5 C 1.38712 * 119.94276 * 180.02562 * 4 3 2 6 6 O 1.35907 * 120.04976 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99492 * 179.97438 * 6 5 4 8 8 C 1.38749 * 119.89286 * 359.97438 * 5 4 3 9 9 C 1.38124 * 119.94411 * 359.75643 * 8 5 4 10 10 C 1.38243 * 119.97353 * 85.00070 * 3 2 1 11 11 C 1.50704 * 119.94208 * 359.97438 * 10 3 2 12 12 N 1.46903 * 109.47018 * 80.00328 * 11 10 3 13 13 C 1.47957 * 111.00079 * 170.00106 * 12 11 10 14 14 C 1.53937 * 86.18208 * 222.41605 * 13 12 11 15 15 O 1.42896 * 113.73148 * 269.25755 * 14 13 12 16 16 C 1.50694 * 113.73443 * 138.07827 * 14 13 12 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47958 * 111.00224 * 70.63784 * 12 11 10 25 25 H 1.08996 * 109.47738 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47375 * 300.00319 * 1 2 3 27 27 H 1.09004 * 109.47098 * 59.99868 * 1 2 3 28 28 H 1.09001 * 109.46851 * 239.99641 * 2 1 3 29 29 H 1.09004 * 109.47098 * 120.00132 * 2 1 3 30 30 H 1.07996 * 120.02417 * 359.97438 * 4 3 2 31 31 H 1.09003 * 109.47437 * 59.99933 * 7 6 5 32 32 H 1.09005 * 109.47213 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47433 * 299.99315 * 7 6 5 34 34 H 1.07998 * 120.03057 * 180.02562 * 8 5 4 35 35 H 1.07997 * 119.97566 * 180.26750 * 9 8 5 36 36 H 1.08997 * 109.47128 * 320.00372 * 11 10 3 37 37 H 1.08999 * 109.47288 * 199.99630 * 11 10 3 38 38 H 1.08999 * 113.76060 * 108.09601 * 13 12 11 39 39 H 1.09001 * 113.85944 * 336.74419 * 13 12 11 40 40 H 0.96709 * 114.00030 * 178.09403 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.09003 * 113.76031 * 23.26533 * 24 12 11 43 43 H 1.08999 * 113.76380 * 251.90073 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3613 2.0366 -1.1923 5 6 2.8242 3.3442 -1.1915 6 8 3.1479 3.9523 -2.3630 7 6 3.6172 5.2998 -2.2863 8 6 2.9551 4.0306 0.0072 9 6 2.6197 3.4124 1.1960 10 6 2.1642 2.1066 1.1930 11 6 1.8047 1.4325 2.4920 12 7 2.9092 0.5603 2.9132 13 6 2.6997 0.0679 4.2925 14 6 4.1974 0.3487 4.5104 15 8 5.0404 -0.7672 4.2172 16 6 4.5079 0.9859 5.8403 17 1 3.7099 1.2014 6.5353 18 6 5.8109 1.2939 6.1697 19 7 6.7828 1.0311 5.3235 20 14 6.1956 2.0844 7.8179 21 1 6.1426 3.5622 7.6825 22 1 5.1963 1.6432 8.8238 23 1 7.5541 1.6760 8.2575 24 6 4.0756 1.3570 3.3536 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2588 1.5001 -2.1239 31 1 4.5211 5.3357 -1.6782 32 1 3.8398 5.6647 -3.2891 33 1 2.8494 5.9269 -1.8334 34 1 3.3149 5.0489 0.0104 35 1 2.7174 3.9477 2.1288 36 1 0.9029 0.8359 2.3543 37 1 1.6270 2.1886 3.2568 38 1 2.4386 -0.9890 4.3466 39 1 2.0429 0.6992 4.8911 40 1 5.9843 -0.5862 4.3248 41 1 7.6994 1.2481 5.5552 42 1 3.8213 2.3667 3.6761 43 1 4.9140 1.3301 2.6575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337526711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:31 Heat of formation + Delta-G solvation = -52.592435 kcal Electronic energy + Delta-G solvation = -23729.694163 eV Core-core repulsion = 20354.257623 eV Total energy + Delta-G solvation = -3375.436540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45097 -40.55786 -38.83512 -36.14881 -34.75439 -34.09836 -32.64943 -30.69054 -29.33085 -28.27241 -27.09997 -26.69021 -24.75451 -24.03807 -22.62459 -21.23407 -20.41353 -19.20685 -18.62677 -17.55020 -17.14897 -16.80479 -16.60701 -16.52489 -15.98898 -15.70584 -15.41490 -15.14177 -14.55393 -14.24078 -14.17049 -14.07980 -13.96999 -13.63758 -13.32107 -13.24407 -13.00660 -12.84779 -12.74494 -12.53557 -12.36170 -12.26067 -12.05808 -11.89264 -11.78481 -11.65857 -11.46863 -11.16239 -10.63031 -10.11163 -9.73812 -9.53907 -9.00705 -8.23520 -6.41705 0.38763 0.43890 1.40830 1.43426 1.53436 2.36473 2.37189 2.70519 2.97709 3.29718 3.78502 3.80834 3.94180 4.06597 4.18578 4.23054 4.29342 4.31551 4.37613 4.42566 4.45284 4.54743 4.57299 4.66366 4.67175 4.73539 4.75640 4.85943 4.94301 5.06159 5.14782 5.17023 5.21176 5.31747 5.37435 5.42154 5.48162 5.60938 5.76106 5.78330 5.84518 6.00399 6.35725 6.45524 6.63809 7.31456 7.55044 8.80946 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.004445 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.582697 B = 6297.023604 C = 7326.668894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.026 4.026 4 C -0.165 4.165 5 C 0.117 3.883 6 O -0.333 6.333 7 C 0.019 3.981 8 C -0.216 4.216 9 C -0.082 4.082 10 C -0.120 4.120 11 C 0.063 3.937 12 N -0.468 5.468 13 C 0.016 3.984 14 C 0.217 3.783 15 O -0.585 6.585 16 C -0.560 4.560 17 H 0.065 0.935 18 C 0.028 3.972 19 N -0.920 5.920 20 Si 0.966 3.034 21 H -0.273 1.273 22 H -0.268 1.268 23 H -0.281 1.281 24 C 0.010 3.990 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.145 0.855 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.381 0.619 41 H 0.273 0.727 42 H 0.055 0.945 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 6.622 -11.988 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 C -0.026 4.026 4 C -0.184 4.184 5 C 0.072 3.928 6 O -0.247 6.247 7 C -0.075 4.075 8 C -0.235 4.235 9 C -0.100 4.100 10 C -0.121 4.121 11 C -0.065 4.065 12 N -0.190 5.190 13 C -0.112 4.112 14 C 0.176 3.824 15 O -0.396 6.396 16 C -0.598 4.598 17 H 0.083 0.917 18 C -0.172 4.172 19 N -0.561 5.561 20 Si 0.791 3.209 21 H -0.199 1.199 22 H -0.193 1.193 23 H -0.206 1.206 24 C -0.120 4.120 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.157 0.843 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.083 0.917 34 H 0.162 0.838 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.235 0.765 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.006 5.811 -12.877 17.312 hybrid contribution 1.115 1.619 1.697 2.598 sum -8.891 7.430 -11.180 16.101 Atomic orbital electron populations 1.21688 0.93291 1.02528 1.01955 1.20632 0.97165 0.91431 1.03551 1.19684 0.95433 0.96322 0.91203 1.20443 1.05868 0.93217 0.98862 1.19102 0.95791 0.92799 0.85090 1.86023 1.80302 1.30060 1.28327 1.23319 0.99249 0.79475 1.05493 1.21318 1.08395 1.01973 0.91778 1.21014 0.96527 0.94499 0.97986 1.19608 1.03539 0.94337 0.94624 1.21580 0.95918 0.95549 0.93435 1.68525 1.03950 1.25742 1.20818 1.24088 0.96941 1.00823 0.89362 1.20149 0.87610 0.83623 0.91061 1.86019 1.22966 1.38992 1.91617 1.21948 0.93841 1.40748 1.03271 0.91696 1.25799 0.95840 0.95017 1.00543 1.69441 1.00838 1.48659 1.37170 0.85443 0.77564 0.78574 0.79363 1.19878 1.19280 1.20648 1.24292 0.93234 0.96785 0.97678 0.91045 0.92948 0.92151 0.90494 0.90629 0.84349 0.92494 0.85972 0.91674 0.83765 0.85896 0.88835 0.94038 0.90389 0.90332 0.76486 0.91732 0.92638 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.75 71.98 0.70 -2.21 16 2 C -0.09 -2.41 5.40 29.84 0.16 -2.25 16 3 C -0.03 -0.77 5.13 -19.88 -0.10 -0.88 16 4 C -0.17 -4.74 9.62 22.37 0.22 -4.52 16 5 C 0.12 3.32 6.69 22.51 0.15 3.47 16 6 O -0.33 -8.34 10.50 -92.50 -0.97 -9.31 16 7 C 0.02 0.31 9.81 113.37 1.11 1.42 16 8 C -0.22 -5.98 9.04 22.36 0.20 -5.78 16 9 C -0.08 -2.52 9.48 22.26 0.21 -2.31 16 10 C -0.12 -3.90 4.96 -19.85 -0.10 -4.00 16 11 C 0.06 2.10 4.10 85.56 0.35 2.45 16 12 N -0.47 -19.15 5.57 -915.44 -5.10 -24.25 16 13 C 0.02 0.70 7.36 86.41 0.64 1.34 16 14 C 0.22 11.06 1.44 -10.89 -0.02 11.05 16 15 O -0.58 -32.56 13.48 -148.98 -2.01 -34.56 16 16 C -0.56 -29.94 8.62 25.60 0.22 -29.72 16 17 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 18 C 0.03 1.46 5.40 84.66 0.46 1.91 16 19 N -0.92 -50.15 11.09 21.45 0.24 -49.91 16 20 Si 0.97 41.56 29.54 68.60 2.03 43.59 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 24 C 0.01 0.46 6.71 86.41 0.58 1.04 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.14 6.71 -2.39 -0.02 1.12 16 27 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.08 1.85 8.05 -2.39 -0.02 1.84 16 29 H 0.08 2.36 6.59 -2.38 -0.02 2.35 16 30 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 32 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 34 H 0.14 3.22 6.30 -2.91 -0.02 3.21 16 35 H 0.12 3.66 8.03 -2.91 -0.02 3.63 16 36 H 0.09 2.79 5.83 -2.39 -0.01 2.78 16 37 H 0.04 1.38 7.55 -2.39 -0.02 1.36 16 38 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.08 3.09 7.75 -2.39 -0.02 3.07 16 40 H 0.38 21.84 6.46 -74.05 -0.48 21.37 16 41 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.06 2.58 7.73 -2.39 -0.02 2.56 16 43 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -61.10 346.22 -0.50 -61.61 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: 0.53 Total: 41.82 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.78 Total: -28.98 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -4.86 Total: -74.16 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -2.98 Total: -43.87 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -61.10 -0.50 -61.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337526711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.013 kcal (2) G-P(sol) polarization free energy of solvation -61.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds