Wall clock time and date at job start Tue Mar 31 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00024 * 2 1 4 4 C 1.38237 * 119.99939 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00219 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00005 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.46920 * 273.58182 * 6 5 4 8 8 C 1.52998 * 109.47253 * 153.58308 * 6 5 4 9 9 C 1.50696 * 109.47392 * 175.00077 * 8 6 5 10 10 O 1.20827 * 119.99926 * 359.97438 * 9 8 6 11 11 O 1.34221 * 120.00278 * 179.97438 * 9 8 6 12 12 C 1.45199 * 117.00445 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46710 * 90.00023 * 12 11 9 14 14 C 1.53001 * 109.47753 * 210.00109 * 12 11 9 15 15 N 1.46497 * 109.47339 * 33.57638 * 6 5 4 16 16 C 1.36944 * 119.99761 * 63.41744 * 15 6 5 17 17 H 1.07998 * 119.99994 * 5.67454 * 16 15 6 18 18 C 1.38802 * 120.00125 * 185.67921 * 16 15 6 19 19 N 1.31629 * 120.00006 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00248 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47195 * 89.99861 * 20 18 16 22 22 H 1.48506 * 109.47367 * 209.99925 * 20 18 16 23 23 H 1.48500 * 109.47218 * 329.99912 * 20 18 16 24 24 C 1.38232 * 119.99768 * 0.25818 * 5 4 3 25 25 C 1.38234 * 120.00133 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.46681 * 90.00354 * 1 2 3 27 27 H 1.09000 * 109.47228 * 209.99783 * 1 2 3 28 28 H 1.08999 * 109.47371 * 330.00265 * 1 2 3 29 29 H 1.08002 * 119.99880 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.99540 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47312 * 54.99297 * 8 6 5 32 32 H 1.09007 * 109.46510 * 294.99968 * 8 6 5 33 33 H 1.08999 * 109.46788 * 330.00750 * 12 11 9 34 34 H 1.09005 * 109.47248 * 180.02562 * 13 12 11 35 35 H 1.08996 * 109.47282 * 300.00648 * 13 12 11 36 36 H 1.09004 * 109.47324 * 60.00682 * 13 12 11 37 37 H 1.09000 * 109.46729 * 60.00244 * 14 12 11 38 38 H 1.08998 * 109.46985 * 180.02562 * 14 12 11 39 39 H 1.08995 * 109.47069 * 300.00454 * 14 12 11 40 40 H 0.96993 * 120.00624 * 243.41909 * 15 6 5 41 41 H 0.97006 * 119.99648 * 179.97438 * 19 18 16 42 42 H 1.08000 * 119.99918 * 179.72646 * 24 5 4 43 43 H 1.08004 * 119.99938 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 1 6.1413 0.0638 -1.0278 8 6 6.2893 -1.2915 0.6402 9 6 7.7911 -1.3483 0.5290 10 8 8.3914 -0.4482 -0.0089 11 8 8.4618 -2.3986 1.0276 12 6 9.9066 -2.3865 0.8843 13 6 10.5341 -1.7039 2.1014 14 6 10.4214 -3.8238 0.7838 15 7 6.2677 1.1511 0.7613 16 6 5.9966 1.2503 2.0999 17 1 5.5027 0.4381 2.6125 18 6 6.3566 2.3948 2.7980 19 7 6.9589 3.3845 2.1734 20 14 5.9862 2.5304 4.6239 21 1 7.1319 1.9953 5.4025 22 1 5.7680 3.9555 4.9802 23 1 4.7642 1.7484 4.9405 24 6 3.5806 -1.1971 -0.0054 25 6 2.1982 -1.1971 -0.0005 26 1 -0.3633 -0.0001 -1.0278 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6581 2.1325 -0.0004 30 1 4.1205 2.1325 -0.0010 31 1 5.8542 -2.1491 0.1270 32 1 6.0017 -1.3130 1.6915 33 1 10.1775 -1.8395 -0.0188 34 1 11.6187 -1.6944 1.9937 35 1 10.1673 -0.6800 2.1730 36 1 10.2632 -2.2509 3.0045 37 1 9.9744 -4.3099 -0.0833 38 1 11.5060 -3.8146 0.6767 39 1 10.1504 -4.3707 1.6868 40 1 6.7834 1.8430 0.3183 41 1 7.2101 4.1845 2.6612 42 1 4.1206 -2.1324 -0.0099 43 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342514047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:46 Heat of formation + Delta-G solvation = -60.870894 kcal Electronic energy + Delta-G solvation = -23625.864043 eV Core-core repulsion = 20250.068523 eV Total energy + Delta-G solvation = -3375.795521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.05373 -38.97069 -36.63719 -35.25036 -32.93435 -32.59028 -31.01890 -30.47110 -28.79491 -27.17542 -26.73163 -24.41721 -22.79950 -21.89204 -21.31538 -20.18160 -19.27708 -17.58859 -17.06628 -15.94158 -15.74121 -15.33626 -14.92033 -14.46704 -14.38066 -14.04185 -13.85715 -13.43306 -13.29015 -13.05147 -12.85673 -12.80882 -12.49534 -12.23606 -12.02175 -11.80223 -11.67046 -11.61266 -11.33840 -11.17306 -10.87849 -10.74003 -10.68685 -10.49451 -10.31536 -10.16786 -9.93936 -9.81331 -9.53829 -8.94093 -8.31964 -7.88541 -6.97058 -5.75126 -3.05141 1.90598 2.02087 2.94488 3.17541 3.42897 3.49364 3.49982 4.33776 4.60279 4.92726 5.05214 5.15901 5.19732 5.27535 5.29138 5.45057 5.47115 5.55459 5.59105 5.64312 5.72927 5.76175 5.77295 5.87853 5.91968 5.95692 5.99287 6.02622 6.09490 6.20238 6.35470 6.36082 6.40131 6.59836 6.65848 6.71084 6.99555 7.05455 7.14867 7.39524 7.63855 7.72327 8.41821 8.46903 9.54995 10.09631 10.46582 11.46515 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.005882 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.809178 B = 4758.910775 C = 6523.189423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C -0.128 4.128 4 C -0.069 4.069 5 C -0.081 4.081 6 C 0.221 3.779 7 H 0.075 0.925 8 C -0.124 4.124 9 C 0.468 3.532 10 O -0.489 6.489 11 O -0.365 6.365 12 C 0.081 3.919 13 C -0.170 4.170 14 C -0.147 4.147 15 N -0.706 5.706 16 C -0.236 4.236 17 H 0.068 0.932 18 C -0.006 4.006 19 N -0.926 5.926 20 Si 0.898 3.102 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.128 4.128 25 C -0.131 4.131 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.390 0.610 41 H 0.254 0.746 42 H 0.117 0.883 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 -12.541 -5.098 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.146 4.146 4 C -0.087 4.087 5 C -0.084 4.084 6 C 0.109 3.891 7 H 0.093 0.907 8 C -0.163 4.163 9 C 0.311 3.689 10 O -0.374 6.374 11 O -0.283 6.283 12 C 0.026 3.974 13 C -0.227 4.227 14 C -0.204 4.204 15 N -0.344 5.344 16 C -0.367 4.367 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.573 5.573 20 Si 0.729 3.271 21 H -0.219 1.219 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.146 4.146 25 C -0.149 4.149 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.150 0.850 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.225 0.775 41 H 0.064 0.936 42 H 0.135 0.865 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.708 -12.225 -5.081 13.513 hybrid contribution 0.101 0.431 1.165 1.247 sum -2.606 -11.794 -3.916 12.697 Atomic orbital electron populations 1.20712 0.92170 1.02099 1.01500 1.19766 0.95315 0.93529 1.01936 1.21008 0.94603 0.96886 1.02135 1.21086 0.93023 0.99030 0.95576 1.20794 0.97408 0.92733 0.97434 1.18861 0.87920 0.87232 0.95057 0.90728 1.22108 0.87015 1.01545 1.05676 1.23700 0.91575 0.79076 0.74570 1.90634 1.70095 1.36347 1.40356 1.86555 1.21538 1.45765 1.74486 1.22556 0.77698 0.97369 0.99778 1.22192 1.00580 1.02172 0.97799 1.21866 1.00807 0.94833 1.02896 1.42302 1.62862 1.22620 1.06650 1.19074 1.32420 1.00041 0.85184 0.91397 1.24694 1.01382 0.96461 0.97704 1.69680 1.45663 1.06953 1.35032 0.86336 0.77915 0.76883 0.85995 1.21858 1.21773 1.20696 1.21096 0.93935 0.97705 1.01874 1.20820 0.94236 0.96792 1.03085 0.91930 0.92192 0.92050 0.86971 0.85021 0.89185 0.87485 0.90121 0.91385 0.91205 0.91897 0.92016 0.90865 0.91645 0.77518 0.93587 0.86514 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.11 -1.60 5.88 -104.62 -0.62 -2.21 16 3 C -0.13 -2.17 9.70 -39.58 -0.38 -2.56 16 4 C -0.07 -1.33 8.97 -39.58 -0.36 -1.69 16 5 C -0.08 -1.50 5.17 -104.63 -0.54 -2.04 16 6 C 0.22 4.34 2.66 -69.08 -0.18 4.16 16 7 H 0.07 1.43 7.96 -51.92 -0.41 1.02 16 8 C -0.12 -2.18 4.56 -27.89 -0.13 -2.30 16 9 C 0.47 8.95 7.79 36.00 0.28 9.23 16 10 O -0.49 -10.76 14.57 -18.75 -0.27 -11.03 16 11 O -0.36 -6.21 9.88 -39.23 -0.39 -6.59 16 12 C 0.08 1.18 3.18 -26.73 -0.09 1.09 16 13 C -0.17 -2.46 9.55 37.16 0.35 -2.10 16 14 C -0.15 -1.56 9.57 37.16 0.36 -1.20 16 15 N -0.71 -17.07 3.54 -54.55 -0.19 -17.27 16 16 C -0.24 -6.27 8.52 -15.06 -0.13 -6.39 16 17 H 0.07 1.79 6.84 -52.49 -0.36 1.43 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 19 N -0.93 -27.64 13.07 55.49 0.73 -26.91 16 20 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 C -0.13 -2.03 9.13 -39.58 -0.36 -2.39 16 25 C -0.13 -1.95 9.70 -39.58 -0.38 -2.33 16 26 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.13 2.84 7.51 -52.49 -0.39 2.45 16 31 H 0.09 1.26 6.23 -51.93 -0.32 0.94 16 32 H 0.11 2.02 6.82 -51.93 -0.35 1.66 16 33 H 0.08 1.25 7.16 -51.93 -0.37 0.87 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.39 10.47 8.04 -40.82 -0.33 10.14 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.12 1.57 5.97 -52.49 -0.31 1.26 16 43 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -30.92 355.95 -8.33 -39.26 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.64 Total: 11.67 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -1.91 Total: -11.91 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.53 Total: -44.18 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.66 Total: -17.62 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.92 -8.33 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342514047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.614 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds