Wall clock time and date at job start Tue Mar 31 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00024 * 2 1 4 4 C 1.38237 * 119.99939 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00219 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00005 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.46920 * 273.58182 * 6 5 4 8 8 C 1.52998 * 109.47253 * 153.58308 * 6 5 4 9 9 C 1.50696 * 109.47392 * 175.00077 * 8 6 5 10 10 O 1.20827 * 119.99926 * 359.97438 * 9 8 6 11 11 O 1.34221 * 120.00278 * 179.97438 * 9 8 6 12 12 C 1.45199 * 117.00445 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46710 * 90.00023 * 12 11 9 14 14 C 1.53001 * 109.47753 * 210.00109 * 12 11 9 15 15 N 1.46497 * 109.47339 * 33.57638 * 6 5 4 16 16 C 1.36944 * 119.99761 * 63.41744 * 15 6 5 17 17 H 1.07998 * 119.99994 * 5.67454 * 16 15 6 18 18 C 1.38802 * 120.00125 * 185.67921 * 16 15 6 19 19 N 1.31629 * 120.00006 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00248 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47195 * 89.99861 * 20 18 16 22 22 H 1.48506 * 109.47367 * 209.99925 * 20 18 16 23 23 H 1.48500 * 109.47218 * 329.99912 * 20 18 16 24 24 C 1.38232 * 119.99768 * 0.25818 * 5 4 3 25 25 C 1.38234 * 120.00133 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.46681 * 90.00354 * 1 2 3 27 27 H 1.09000 * 109.47228 * 209.99783 * 1 2 3 28 28 H 1.08999 * 109.47371 * 330.00265 * 1 2 3 29 29 H 1.08002 * 119.99880 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.99540 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47312 * 54.99297 * 8 6 5 32 32 H 1.09007 * 109.46510 * 294.99968 * 8 6 5 33 33 H 1.08999 * 109.46788 * 330.00750 * 12 11 9 34 34 H 1.09005 * 109.47248 * 180.02562 * 13 12 11 35 35 H 1.08996 * 109.47282 * 300.00648 * 13 12 11 36 36 H 1.09004 * 109.47324 * 60.00682 * 13 12 11 37 37 H 1.09000 * 109.46729 * 60.00244 * 14 12 11 38 38 H 1.08998 * 109.46985 * 180.02562 * 14 12 11 39 39 H 1.08995 * 109.47069 * 300.00454 * 14 12 11 40 40 H 0.96993 * 120.00624 * 243.41909 * 15 6 5 41 41 H 0.97006 * 119.99648 * 179.97438 * 19 18 16 42 42 H 1.08000 * 119.99918 * 179.72646 * 24 5 4 43 43 H 1.08004 * 119.99938 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 1 6.1413 0.0638 -1.0278 8 6 6.2893 -1.2915 0.6402 9 6 7.7911 -1.3483 0.5290 10 8 8.3914 -0.4482 -0.0089 11 8 8.4618 -2.3986 1.0276 12 6 9.9066 -2.3865 0.8843 13 6 10.5341 -1.7039 2.1014 14 6 10.4214 -3.8238 0.7838 15 7 6.2677 1.1511 0.7613 16 6 5.9966 1.2503 2.0999 17 1 5.5027 0.4381 2.6125 18 6 6.3566 2.3948 2.7980 19 7 6.9589 3.3845 2.1734 20 14 5.9862 2.5304 4.6239 21 1 7.1319 1.9953 5.4025 22 1 5.7680 3.9555 4.9802 23 1 4.7642 1.7484 4.9405 24 6 3.5806 -1.1971 -0.0054 25 6 2.1982 -1.1971 -0.0005 26 1 -0.3633 -0.0001 -1.0278 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6581 2.1325 -0.0004 30 1 4.1205 2.1325 -0.0010 31 1 5.8542 -2.1491 0.1270 32 1 6.0017 -1.3130 1.6915 33 1 10.1775 -1.8395 -0.0188 34 1 11.6187 -1.6944 1.9937 35 1 10.1673 -0.6800 2.1730 36 1 10.2632 -2.2509 3.0045 37 1 9.9744 -4.3099 -0.0833 38 1 11.5060 -3.8146 0.6767 39 1 10.1504 -4.3707 1.6868 40 1 6.7834 1.8430 0.3183 41 1 7.2101 4.1845 2.6612 42 1 4.1206 -2.1324 -0.0099 43 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342514047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:46 Heat of formation + Delta-G solvation = -77.356485 kcal Electronic energy + Delta-G solvation = -23626.578912 eV Core-core repulsion = 20250.068523 eV Total energy + Delta-G solvation = -3376.510390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51795 -40.30175 -38.06850 -36.86778 -34.45198 -34.04860 -32.46378 -31.86289 -30.47603 -28.19966 -28.01717 -26.22915 -24.26380 -23.26804 -22.58177 -21.49408 -20.79133 -19.36474 -18.65371 -17.43440 -17.24886 -16.66779 -16.51513 -15.97167 -15.81213 -15.56132 -15.21925 -14.90581 -14.55864 -14.43740 -14.16688 -14.02380 -13.81941 -13.25276 -13.18276 -13.12554 -13.02043 -12.89644 -12.85697 -12.75757 -12.58985 -12.38462 -12.07490 -11.88156 -11.86390 -11.66038 -11.56321 -11.43233 -11.16699 -10.95523 -9.62524 -9.25673 -8.93418 -7.89888 -5.17992 0.61127 0.71331 1.42535 1.42985 1.43501 1.51047 1.85243 2.55458 3.02479 3.41471 3.83355 3.85658 3.87835 3.98158 4.03421 4.15842 4.17189 4.24901 4.30741 4.40896 4.53893 4.57542 4.66535 4.72546 4.76101 4.85330 4.86736 4.91924 4.98956 5.05721 5.08520 5.10586 5.14884 5.24527 5.37552 5.42706 5.53382 5.65280 5.71412 5.86553 6.02014 6.29323 6.34749 6.98777 7.37325 8.10182 8.35720 9.33554 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.005882 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.809178 B = 4758.910775 C = 6523.189423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.102 4.102 3 C -0.141 4.141 4 C -0.098 4.098 5 C -0.101 4.101 6 C 0.220 3.780 7 H 0.071 0.929 8 C -0.116 4.116 9 C 0.466 3.534 10 O -0.528 6.528 11 O -0.362 6.362 12 C 0.070 3.930 13 C -0.167 4.167 14 C -0.137 4.137 15 N -0.715 5.715 16 C -0.211 4.211 17 H 0.073 0.927 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.954 3.046 21 H -0.292 1.292 22 H -0.299 1.299 23 H -0.269 1.269 24 C -0.123 4.123 25 C -0.127 4.127 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.372 0.628 41 H 0.246 0.754 42 H 0.146 0.854 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -16.298 -4.825 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.103 4.103 3 C -0.159 4.159 4 C -0.116 4.116 5 C -0.103 4.103 6 C 0.110 3.890 7 H 0.089 0.911 8 C -0.155 4.155 9 C 0.310 3.690 10 O -0.416 6.416 11 O -0.280 6.280 12 C 0.016 3.984 13 C -0.224 4.224 14 C -0.194 4.194 15 N -0.352 5.352 16 C -0.343 4.343 17 H 0.091 0.909 18 C -0.265 4.265 19 N -0.618 5.618 20 Si 0.785 3.215 21 H -0.220 1.220 22 H -0.225 1.225 23 H -0.194 1.194 24 C -0.141 4.141 25 C -0.145 4.145 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.154 0.846 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.203 0.797 41 H 0.055 0.945 42 H 0.164 0.836 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.443 -16.062 -4.810 17.345 hybrid contribution 0.594 1.489 0.973 1.875 sum -3.849 -14.573 -3.837 15.553 Atomic orbital electron populations 1.20777 0.89323 1.03264 1.02938 1.20212 0.97419 0.92784 0.99837 1.21158 0.93659 0.98528 1.02551 1.20917 0.94302 0.98014 0.98373 1.20597 0.96251 0.93729 0.99706 1.19025 0.88973 0.86492 0.94503 0.91076 1.22035 0.86291 1.01821 1.05316 1.24023 0.92281 0.78863 0.73803 1.90630 1.70968 1.37772 1.42200 1.86540 1.23088 1.44570 1.73819 1.22916 0.76301 1.00138 0.99054 1.22191 1.02344 0.99510 0.98386 1.21861 1.02222 0.91630 1.03685 1.42388 1.62884 1.23682 1.06256 1.19315 1.29577 0.99260 0.86099 0.90883 1.25389 1.02944 0.96809 1.01373 1.69840 1.48303 1.07504 1.36178 0.85409 0.77899 0.76356 0.81856 1.22010 1.22541 1.19406 1.21364 0.94779 0.97420 1.00532 1.21275 0.93897 0.98163 1.01153 0.90232 0.90218 0.91773 0.86250 0.88928 0.84647 0.88258 0.91566 0.88541 0.95609 0.90931 0.91217 0.88384 0.90809 0.79700 0.94511 0.83618 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 10.01 71.24 0.71 -1.35 16 2 C -0.10 -2.81 5.88 -19.87 -0.12 -2.92 16 3 C -0.14 -4.72 9.70 22.27 0.22 -4.50 16 4 C -0.10 -3.89 8.97 22.27 0.20 -3.69 16 5 C -0.10 -3.68 5.17 -19.87 -0.10 -3.79 16 6 C 0.22 8.75 2.66 44.25 0.12 8.87 16 7 H 0.07 2.82 7.96 -2.38 -0.02 2.81 16 8 C -0.12 -3.93 4.56 29.85 0.14 -3.79 16 9 C 0.47 17.81 7.79 71.23 0.56 18.37 16 10 O -0.53 -24.04 14.57 21.96 0.32 -23.72 16 11 O -0.36 -11.96 9.88 -51.33 -0.51 -12.47 16 12 C 0.07 1.98 3.18 30.59 0.10 2.08 16 13 C -0.17 -4.76 9.55 71.98 0.69 -4.07 16 14 C -0.14 -2.51 9.57 71.98 0.69 -1.82 16 15 N -0.72 -36.23 3.54 -326.50 -1.16 -37.38 16 16 C -0.21 -11.49 8.52 84.03 0.72 -10.78 16 17 H 0.07 3.86 6.84 -2.91 -0.02 3.84 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 19 N -0.97 -60.78 13.07 21.65 0.28 -60.49 16 20 Si 0.95 47.39 29.55 68.60 2.03 49.42 16 21 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 22 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.12 -3.51 9.13 22.27 0.20 -3.31 16 25 C -0.13 -3.24 9.70 22.27 0.22 -3.03 16 26 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 28 H 0.06 1.22 8.09 -2.39 -0.02 1.21 16 29 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 30 H 0.09 4.34 7.51 -2.91 -0.02 4.32 16 31 H 0.14 3.32 6.23 -2.39 -0.01 3.31 16 32 H 0.10 3.60 6.82 -2.38 -0.02 3.58 16 33 H 0.07 2.06 7.16 -2.39 -0.02 2.04 16 34 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.37 21.32 8.04 -92.71 -0.75 20.58 16 41 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 42 H 0.15 3.23 5.97 -2.91 -0.02 3.21 16 43 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -71.38 355.95 6.02 -65.36 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: 0.26 Total: 36.82 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 4.79 Total: -17.54 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -0.87 Total: -97.87 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.19 Total: -36.19 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -71.38 6.02 -65.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342514047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.995 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds