Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38238 * 120.00415 * 2 1 4 4 C 1.38232 * 120.00025 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00202 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00095 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47172 * 267.71153 * 6 5 4 8 8 C 1.53002 * 109.46914 * 27.71502 * 6 5 4 9 9 C 1.50703 * 109.47005 * 184.99503 * 8 6 5 10 10 O 1.20822 * 119.99711 * 0.02562 * 9 8 6 11 11 O 1.34231 * 119.99903 * 179.97438 * 9 8 6 12 12 C 1.45195 * 116.99838 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47032 * 90.00041 * 12 11 9 14 14 C 1.53000 * 109.47053 * 210.00029 * 12 11 9 15 15 N 1.46504 * 109.46976 * 147.71147 * 6 5 4 16 16 C 1.36937 * 120.00168 * 298.14783 * 15 6 5 17 17 H 1.07998 * 119.99968 * 354.95759 * 16 15 6 18 18 C 1.38808 * 120.00041 * 174.69375 * 16 15 6 19 19 N 1.31622 * 119.99995 * 0.26394 * 18 16 15 20 20 Si 1.86795 * 120.00222 * 180.27112 * 18 16 15 21 21 H 1.48505 * 109.47325 * 89.99426 * 20 18 16 22 22 H 1.48501 * 109.47282 * 209.99548 * 20 18 16 23 23 H 1.48498 * 109.46992 * 329.99526 * 20 18 16 24 24 C 1.38241 * 119.99832 * 0.27046 * 5 4 3 25 25 C 1.38228 * 119.99664 * 359.51975 * 24 5 4 26 26 H 1.08999 * 109.47255 * 89.98916 * 1 2 3 27 27 H 1.08996 * 109.47102 * 210.00076 * 1 2 3 28 28 H 1.09002 * 109.46669 * 329.99714 * 1 2 3 29 29 H 1.07997 * 119.99435 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.99622 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47380 * 304.99760 * 8 6 5 32 32 H 1.08998 * 109.47212 * 65.00111 * 8 6 5 33 33 H 1.09003 * 109.47357 * 330.00310 * 12 11 9 34 34 H 1.09000 * 109.46894 * 179.97438 * 13 12 11 35 35 H 1.08993 * 109.47153 * 299.99788 * 13 12 11 36 36 H 1.08995 * 109.47121 * 60.00002 * 13 12 11 37 37 H 1.08998 * 109.47109 * 60.00501 * 14 12 11 38 38 H 1.09006 * 109.46843 * 179.97438 * 14 12 11 39 39 H 1.08995 * 109.47168 * 300.00039 * 14 12 11 40 40 H 0.97003 * 119.99470 * 118.14343 * 15 6 5 41 41 H 0.97000 * 120.00359 * 180.02562 * 19 18 16 42 42 H 1.07999 * 119.99483 * 179.72686 * 24 5 4 43 43 H 1.08010 * 119.99897 * 180.27551 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7787 -0.0002 0.0016 7 1 6.1421 -0.0422 -1.0252 8 6 6.2888 1.2774 0.6713 9 6 7.7907 1.3364 0.5626 10 8 8.3914 0.4480 0.0061 11 8 8.4610 2.3764 1.0831 12 6 9.9059 2.3671 0.9408 13 6 10.2945 3.0679 -0.3626 14 6 10.5395 3.1022 2.1236 15 7 6.2670 -1.1673 0.7405 16 6 5.9678 -1.3109 2.0690 17 1 5.4420 -0.5258 2.5921 18 6 6.3353 -2.4679 2.7421 19 7 6.9761 -3.4247 2.1047 20 14 5.9205 -2.6670 4.5525 21 1 4.5880 -3.3087 4.6874 22 1 6.9479 -3.5177 5.2052 23 1 5.8956 -1.3329 5.2043 24 6 3.5805 -1.1973 -0.0035 25 6 2.1982 -1.1972 0.0003 26 1 -0.3634 0.0002 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1324 -0.0004 30 1 4.1206 2.1323 0.0010 31 1 5.8542 2.1457 0.1760 32 1 6.0004 1.2766 1.7225 33 1 10.2624 1.3372 0.9199 34 1 11.3792 3.0613 -0.4692 35 1 9.8431 2.5442 -1.2052 36 1 9.9380 4.0977 -0.3417 37 1 10.2628 2.6030 3.0522 38 1 11.6244 3.0949 2.0170 39 1 10.1831 4.1320 2.1445 40 1 6.8022 -1.8383 0.2885 41 1 7.2326 -4.2334 2.5749 42 1 4.1205 -2.1326 -0.0071 43 1 1.6581 -2.1325 0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342514049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = -61.030180 kcal Electronic energy + Delta-G solvation = -23578.480816 eV Core-core repulsion = 20202.678389 eV Total energy + Delta-G solvation = -3375.802428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05635 -38.97406 -36.64237 -35.25206 -32.95602 -32.59164 -31.02028 -30.47112 -28.80073 -27.24584 -26.72537 -24.41747 -22.79394 -21.89405 -21.32686 -20.19136 -19.27225 -17.62101 -17.00548 -16.09638 -15.61203 -15.30640 -14.97454 -14.48059 -14.46741 -14.02955 -13.75399 -13.43695 -13.40731 -13.06287 -12.88441 -12.76643 -12.47241 -12.28186 -12.08605 -11.83563 -11.69572 -11.63093 -11.33710 -11.16980 -10.87084 -10.78030 -10.68673 -10.47154 -10.31453 -10.19638 -9.95024 -9.81586 -9.53501 -8.94803 -8.31976 -7.88563 -6.97201 -5.75139 -3.05163 1.90331 2.02075 2.94317 3.17443 3.43292 3.49289 3.49888 4.33729 4.60240 4.90118 5.02251 5.15175 5.19442 5.26664 5.29257 5.45097 5.47249 5.53034 5.55407 5.64364 5.72173 5.73532 5.76357 5.84279 5.89903 5.95599 5.98907 6.02667 6.08154 6.18360 6.20842 6.36226 6.36723 6.59932 6.65970 6.71465 6.99347 7.05214 7.15240 7.39726 7.63994 7.72518 8.41736 8.46756 9.54942 10.09691 10.46685 11.46517 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.005837 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.496118 B = 4795.719185 C = 6571.774489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C -0.131 4.131 4 C -0.127 4.127 5 C -0.081 4.081 6 C 0.221 3.779 7 H 0.075 0.925 8 C -0.124 4.124 9 C 0.469 3.531 10 O -0.490 6.490 11 O -0.364 6.364 12 C 0.078 3.922 13 C -0.166 4.166 14 C -0.148 4.148 15 N -0.706 5.706 16 C -0.236 4.236 17 H 0.068 0.932 18 C -0.006 4.006 19 N -0.926 5.926 20 Si 0.899 3.101 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.068 4.068 25 C -0.128 4.128 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.391 0.609 41 H 0.254 0.746 42 H 0.133 0.867 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 12.801 -5.032 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.150 4.150 4 C -0.146 4.146 5 C -0.084 4.084 6 C 0.109 3.891 7 H 0.093 0.907 8 C -0.164 4.164 9 C 0.311 3.689 10 O -0.375 6.375 11 O -0.283 6.283 12 C 0.023 3.977 13 C -0.224 4.224 14 C -0.205 4.205 15 N -0.345 5.345 16 C -0.368 4.368 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.573 5.573 20 Si 0.730 3.270 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.087 4.087 25 C -0.147 4.147 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.225 0.775 41 H 0.064 0.936 42 H 0.151 0.849 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.679 12.491 -5.020 13.726 hybrid contribution 0.059 -0.443 1.090 1.179 sum -2.619 12.048 -3.929 12.940 Atomic orbital electron populations 1.20711 0.92169 1.02098 1.01506 1.19771 0.95315 0.93527 1.01914 1.20815 0.94226 0.96792 1.03132 1.21089 0.93938 0.97690 1.01877 1.20770 0.97342 0.92737 0.97531 1.18860 0.87955 0.87144 0.95100 0.90725 1.22124 0.86999 1.01568 1.05694 1.23711 0.91622 0.78642 0.74927 1.90631 1.69996 1.36952 1.39884 1.86561 1.21527 1.46504 1.73695 1.22577 0.78092 1.01310 0.95707 1.22180 1.01831 1.01091 0.97266 1.21859 1.00064 1.00949 0.97624 1.42319 1.61318 1.22769 1.08089 1.19080 1.30988 1.00538 0.86148 0.91369 1.24701 1.01161 0.96610 0.97822 1.69675 1.44296 1.07885 1.35468 0.86321 0.77552 0.77490 0.85651 1.21677 1.21880 1.20814 1.21107 0.93011 0.99076 0.95462 1.21013 0.94613 0.96887 1.02144 0.91927 0.92044 0.92194 0.87162 0.86529 0.89206 0.87509 0.89735 0.91206 0.92023 0.91942 0.91638 0.90891 0.91774 0.77490 0.93574 0.84930 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.11 -1.59 5.88 -104.62 -0.62 -2.21 16 3 C -0.13 -1.95 9.70 -39.58 -0.38 -2.33 16 4 C -0.13 -2.02 9.13 -39.58 -0.36 -2.38 16 5 C -0.08 -1.50 5.16 -104.62 -0.54 -2.04 16 6 C 0.22 4.35 2.66 -69.08 -0.18 4.16 16 7 H 0.07 1.43 7.95 -51.93 -0.41 1.02 16 8 C -0.12 -2.19 4.61 -27.88 -0.13 -2.32 16 9 C 0.47 8.97 7.79 36.01 0.28 9.25 16 10 O -0.49 -10.77 14.57 -18.75 -0.27 -11.04 16 11 O -0.36 -6.20 9.88 -39.26 -0.39 -6.59 16 12 C 0.08 1.13 3.18 -26.73 -0.09 1.05 16 13 C -0.17 -1.99 9.55 37.16 0.35 -1.63 16 14 C -0.15 -1.70 9.57 37.16 0.36 -1.35 16 15 N -0.71 -17.12 3.54 -54.55 -0.19 -17.32 16 16 C -0.24 -6.28 8.37 -15.06 -0.13 -6.41 16 17 H 0.07 1.80 6.95 -52.49 -0.37 1.43 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 20 Si 0.90 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.07 -1.33 8.87 -39.58 -0.35 -1.68 16 25 C -0.13 -2.18 9.70 -39.59 -0.38 -2.57 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.57 5.99 -52.49 -0.31 1.26 16 31 H 0.09 1.26 6.22 -51.93 -0.32 0.94 16 32 H 0.11 2.02 6.91 -51.93 -0.36 1.66 16 33 H 0.08 1.41 7.16 -51.93 -0.37 1.04 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.39 10.50 8.04 -40.82 -0.33 10.17 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.13 2.88 7.48 -52.49 -0.39 2.49 16 43 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -30.94 355.93 -8.34 -39.28 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -6.65 Total: 11.45 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -1.90 Total: -11.63 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.53 Total: -44.27 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.66 Total: -17.63 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.94 -8.34 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342514049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.750 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds