Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38238 * 120.00415 * 2 1 4 4 C 1.38232 * 120.00025 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00202 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00095 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47172 * 267.71153 * 6 5 4 8 8 C 1.53002 * 109.46914 * 27.71502 * 6 5 4 9 9 C 1.50703 * 109.47005 * 184.99503 * 8 6 5 10 10 O 1.20822 * 119.99711 * 0.02562 * 9 8 6 11 11 O 1.34231 * 119.99903 * 179.97438 * 9 8 6 12 12 C 1.45195 * 116.99838 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47032 * 90.00041 * 12 11 9 14 14 C 1.53000 * 109.47053 * 210.00029 * 12 11 9 15 15 N 1.46504 * 109.46976 * 147.71147 * 6 5 4 16 16 C 1.36937 * 120.00168 * 298.14783 * 15 6 5 17 17 H 1.07998 * 119.99968 * 354.95759 * 16 15 6 18 18 C 1.38808 * 120.00041 * 174.69375 * 16 15 6 19 19 N 1.31622 * 119.99995 * 0.26394 * 18 16 15 20 20 Si 1.86795 * 120.00222 * 180.27112 * 18 16 15 21 21 H 1.48505 * 109.47325 * 89.99426 * 20 18 16 22 22 H 1.48501 * 109.47282 * 209.99548 * 20 18 16 23 23 H 1.48498 * 109.46992 * 329.99526 * 20 18 16 24 24 C 1.38241 * 119.99832 * 0.27046 * 5 4 3 25 25 C 1.38228 * 119.99664 * 359.51975 * 24 5 4 26 26 H 1.08999 * 109.47255 * 89.98916 * 1 2 3 27 27 H 1.08996 * 109.47102 * 210.00076 * 1 2 3 28 28 H 1.09002 * 109.46669 * 329.99714 * 1 2 3 29 29 H 1.07997 * 119.99435 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.99622 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47380 * 304.99760 * 8 6 5 32 32 H 1.08998 * 109.47212 * 65.00111 * 8 6 5 33 33 H 1.09003 * 109.47357 * 330.00310 * 12 11 9 34 34 H 1.09000 * 109.46894 * 179.97438 * 13 12 11 35 35 H 1.08993 * 109.47153 * 299.99788 * 13 12 11 36 36 H 1.08995 * 109.47121 * 60.00002 * 13 12 11 37 37 H 1.08998 * 109.47109 * 60.00501 * 14 12 11 38 38 H 1.09006 * 109.46843 * 179.97438 * 14 12 11 39 39 H 1.08995 * 109.47168 * 300.00039 * 14 12 11 40 40 H 0.97003 * 119.99470 * 118.14343 * 15 6 5 41 41 H 0.97000 * 120.00359 * 180.02562 * 19 18 16 42 42 H 1.07999 * 119.99483 * 179.72686 * 24 5 4 43 43 H 1.08010 * 119.99897 * 180.27551 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7787 -0.0002 0.0016 7 1 6.1421 -0.0422 -1.0252 8 6 6.2888 1.2774 0.6713 9 6 7.7907 1.3364 0.5626 10 8 8.3914 0.4480 0.0061 11 8 8.4610 2.3764 1.0831 12 6 9.9059 2.3671 0.9408 13 6 10.2945 3.0679 -0.3626 14 6 10.5395 3.1022 2.1236 15 7 6.2670 -1.1673 0.7405 16 6 5.9678 -1.3109 2.0690 17 1 5.4420 -0.5258 2.5921 18 6 6.3353 -2.4679 2.7421 19 7 6.9761 -3.4247 2.1047 20 14 5.9205 -2.6670 4.5525 21 1 4.5880 -3.3087 4.6874 22 1 6.9479 -3.5177 5.2052 23 1 5.8956 -1.3329 5.2043 24 6 3.5805 -1.1973 -0.0035 25 6 2.1982 -1.1972 0.0003 26 1 -0.3634 0.0002 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1324 -0.0004 30 1 4.1206 2.1323 0.0010 31 1 5.8542 2.1457 0.1760 32 1 6.0004 1.2766 1.7225 33 1 10.2624 1.3372 0.9199 34 1 11.3792 3.0613 -0.4692 35 1 9.8431 2.5442 -1.2052 36 1 9.9380 4.0977 -0.3417 37 1 10.2628 2.6030 3.0522 38 1 11.6244 3.0949 2.0170 39 1 10.1831 4.1320 2.1445 40 1 6.8022 -1.8383 0.2885 41 1 7.2326 -4.2334 2.5749 42 1 4.1205 -2.1326 -0.0071 43 1 1.6581 -2.1325 0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342514049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = -77.499257 kcal Electronic energy + Delta-G solvation = -23579.194969 eV Core-core repulsion = 20202.678389 eV Total energy + Delta-G solvation = -3376.516581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51670 -40.30594 -38.06704 -36.86818 -34.45093 -34.04412 -32.46297 -31.86555 -30.48254 -28.18761 -28.01258 -26.23180 -24.25851 -23.26807 -22.58568 -21.49347 -20.78651 -19.38589 -18.61739 -17.56855 -17.06334 -16.69843 -16.55564 -15.99282 -15.82952 -15.55119 -15.17553 -14.91935 -14.53142 -14.36773 -14.24971 -14.07767 -13.73973 -13.27139 -13.21204 -13.13460 -12.99644 -12.88354 -12.84972 -12.74403 -12.59114 -12.39128 -12.06719 -11.87944 -11.85611 -11.67024 -11.54244 -11.45872 -11.15880 -10.95672 -9.62700 -9.25990 -8.93547 -7.89861 -5.18104 0.60772 0.71220 1.42917 1.43507 1.44154 1.51244 1.84997 2.55714 3.02316 3.41378 3.84035 3.85503 3.88055 3.98843 4.03705 4.16278 4.18307 4.24895 4.30723 4.41168 4.54176 4.57627 4.68452 4.72426 4.79440 4.83685 4.85444 4.91911 4.98965 5.05863 5.08574 5.10455 5.15190 5.23313 5.37536 5.42577 5.53468 5.65067 5.71242 5.86581 6.01986 6.29237 6.34632 6.98748 7.37242 8.10093 8.35731 9.33591 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.005837 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.496118 B = 4795.719185 C = 6571.774489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.102 4.102 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.101 4.101 6 C 0.220 3.780 7 H 0.071 0.929 8 C -0.116 4.116 9 C 0.466 3.534 10 O -0.528 6.528 11 O -0.362 6.362 12 C 0.065 3.935 13 C -0.159 4.159 14 C -0.142 4.142 15 N -0.716 5.716 16 C -0.211 4.211 17 H 0.074 0.926 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.955 3.045 21 H -0.290 1.290 22 H -0.301 1.301 23 H -0.269 1.269 24 C -0.097 4.097 25 C -0.141 4.141 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.372 0.628 41 H 0.246 0.754 42 H 0.093 0.907 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 16.549 -4.713 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.102 4.102 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.103 4.103 6 C 0.110 3.890 7 H 0.089 0.911 8 C -0.155 4.155 9 C 0.311 3.689 10 O -0.416 6.416 11 O -0.280 6.280 12 C 0.011 3.989 13 C -0.216 4.216 14 C -0.199 4.199 15 N -0.353 5.353 16 C -0.343 4.343 17 H 0.091 0.909 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.786 3.214 21 H -0.217 1.217 22 H -0.228 1.228 23 H -0.194 1.194 24 C -0.115 4.115 25 C -0.159 4.159 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.203 0.797 41 H 0.055 0.945 42 H 0.111 0.889 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.450 16.319 -4.699 17.556 hybrid contribution 0.558 -1.491 0.883 1.820 sum -3.892 14.828 -3.817 15.798 Atomic orbital electron populations 1.20777 0.89320 1.03275 1.02936 1.20213 0.97416 0.92769 0.99804 1.21270 0.93877 0.98159 1.01161 1.21355 0.94783 0.97393 1.00518 1.20574 0.96180 0.93727 0.99796 1.19023 0.89017 0.86324 0.94610 0.91092 1.22044 0.86283 1.01912 1.05230 1.24021 0.92306 0.78441 0.74176 1.90628 1.70863 1.38398 1.41704 1.86538 1.23089 1.45341 1.73062 1.22937 0.76670 1.00585 0.98716 1.22145 1.03318 1.01346 0.94814 1.21878 1.01442 1.01125 0.95408 1.42407 1.61297 1.23916 1.07673 1.19319 1.28232 0.99736 0.86978 0.90863 1.25403 1.02690 0.97001 1.01505 1.69837 1.46919 1.08416 1.36695 0.85391 0.76777 0.77618 0.81631 1.21695 1.22772 1.19431 1.20924 0.94286 0.98033 0.98303 1.21158 0.93665 0.98524 1.02584 0.90246 0.91781 0.90186 0.83374 0.83633 0.84711 0.88294 0.92805 0.88834 0.93900 0.90070 0.92933 0.88314 0.90051 0.79677 0.94496 0.88921 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 10.01 71.24 0.71 -1.35 16 2 C -0.10 -2.79 5.88 -19.86 -0.12 -2.91 16 3 C -0.13 -3.23 9.70 22.27 0.22 -3.01 16 4 C -0.12 -3.49 9.13 22.27 0.20 -3.29 16 5 C -0.10 -3.68 5.16 -19.86 -0.10 -3.79 16 6 C 0.22 8.77 2.66 44.25 0.12 8.89 16 7 H 0.07 2.82 7.95 -2.39 -0.02 2.81 16 8 C -0.12 -3.94 4.61 29.85 0.14 -3.80 16 9 C 0.47 17.86 7.79 71.24 0.56 18.42 16 10 O -0.53 -24.08 14.57 21.97 0.32 -23.76 16 11 O -0.36 -12.01 9.88 -51.42 -0.51 -12.52 16 12 C 0.07 1.85 3.18 30.60 0.10 1.95 16 13 C -0.16 -3.53 9.55 71.98 0.69 -2.84 16 14 C -0.14 -2.98 9.57 71.98 0.69 -2.29 16 15 N -0.72 -36.31 3.54 -326.50 -1.15 -37.47 16 16 C -0.21 -11.50 8.37 84.03 0.70 -10.79 16 17 H 0.07 3.87 6.95 -2.91 -0.02 3.85 16 18 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 19 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 20 Si 0.96 47.34 29.55 68.60 2.03 49.37 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 22 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 24 C -0.10 -3.88 8.87 22.27 0.20 -3.68 16 25 C -0.14 -4.74 9.70 22.27 0.22 -4.53 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 28 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 29 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.15 3.22 5.99 -2.91 -0.02 3.20 16 31 H 0.14 3.33 6.22 -2.39 -0.01 3.31 16 32 H 0.10 3.59 6.91 -2.39 -0.02 3.58 16 33 H 0.05 1.85 7.16 -2.39 -0.02 1.83 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.37 21.37 8.04 -92.71 -0.75 20.62 16 41 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.09 4.37 7.48 -2.91 -0.02 4.35 16 43 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -71.22 355.93 6.01 -65.21 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.26 Total: 36.58 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 4.78 Total: -16.87 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -0.87 Total: -98.02 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.19 Total: -36.28 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -71.22 6.01 -65.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342514049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.285 kcal (2) G-P(sol) polarization free energy of solvation -71.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds