Wall clock time and date at job start Tue Mar 31 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38284 * 119.97257 * 2 1 4 4 C 1.38243 * 120.11161 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.05291 * 359.77102 * 4 3 2 6 6 C 1.50703 * 120.02521 * 180.25246 * 5 4 3 7 7 C 1.38707 * 119.94502 * 0.52634 * 5 4 3 8 8 O 1.35904 * 120.05375 * 179.72566 * 7 5 4 9 9 C 1.42903 * 116.99628 * 179.72747 * 8 7 5 10 10 C 1.53000 * 109.46726 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 O 1.21273 * 120.00140 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00054 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47194 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47084 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00280 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99788 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99600 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47070 * 90.00336 * 20 18 16 22 22 H 1.48502 * 109.46496 * 209.99700 * 20 18 16 23 23 H 1.48500 * 109.47072 * 329.99934 * 20 18 16 24 24 C 1.38129 * 119.96964 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46814 * 269.97474 * 1 2 3 26 26 H 1.09001 * 109.46866 * 29.97774 * 1 2 3 27 27 H 1.09003 * 109.47124 * 149.97808 * 1 2 3 28 28 H 1.08005 * 119.94205 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.97239 * 180.02562 * 4 3 2 30 30 H 1.08995 * 109.47019 * 270.27636 * 6 5 4 31 31 H 1.08998 * 109.47090 * 30.27533 * 6 5 4 32 32 H 1.09005 * 109.47221 * 150.27358 * 6 5 4 33 33 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 34 34 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 35 35 H 1.09001 * 109.47194 * 299.99575 * 10 9 8 36 36 H 1.08992 * 109.47399 * 59.99748 * 10 9 8 37 37 H 0.97005 * 119.99680 * 359.97438 * 13 11 10 38 38 H 1.08998 * 109.47245 * 300.00495 * 14 13 11 39 39 H 1.09002 * 109.47021 * 59.99873 * 14 13 11 40 40 H 1.09001 * 109.47375 * 300.00051 * 15 14 13 41 41 H 1.09002 * 109.47045 * 60.00127 * 15 14 13 42 42 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.02665 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2013 0.0005 5 6 4.2752 0.0070 0.0059 6 6 5.7822 0.0114 0.0122 7 6 3.5846 -1.1959 -0.0004 8 8 4.2658 -2.3719 -0.0008 9 6 3.4892 -3.5714 -0.0013 10 6 4.4231 -4.7834 -0.0011 11 6 3.6040 -6.0485 -0.0023 12 8 2.3929 -5.9868 -0.0028 13 7 4.2177 -7.2485 -0.0018 14 6 3.4216 -8.4783 -0.0024 15 6 4.3554 -9.6903 -0.0023 16 6 3.5364 -10.9554 -0.0036 17 1 2.4579 -10.9005 -0.0048 18 6 4.1642 -12.1829 -0.0032 19 7 5.4776 -12.2499 -0.0012 20 14 3.1490 -13.7511 -0.0054 21 1 2.8822 -14.1660 -1.4061 22 1 3.8969 -14.8258 0.6952 23 1 1.8611 -13.5080 0.6928 24 6 2.1971 -1.1966 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6565 2.1325 -0.0004 29 1 4.1176 2.1381 0.0010 30 1 6.1498 0.0154 -1.0139 31 1 6.1408 0.9010 0.5300 32 1 6.1460 -0.8790 0.5251 33 1 2.8605 -3.5969 -0.8914 34 1 2.8604 -3.5975 0.8886 35 1 5.0522 -4.7575 -0.8909 36 1 5.0515 -4.7578 0.8890 37 1 5.1865 -7.2978 -0.0011 38 1 2.7921 -8.5040 0.8870 39 1 2.7935 -8.5041 -0.8929 40 1 4.9845 -9.6643 -0.8920 41 1 4.9838 -9.6647 0.8880 42 1 5.9193 -13.1135 -0.0013 43 1 1.6570 -2.1319 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342645666.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:37 Heat of formation + Delta-G solvation = -81.624562 kcal Electronic energy + Delta-G solvation = -21782.604192 eV Core-core repulsion = 18405.908724 eV Total energy + Delta-G solvation = -3376.695467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52568 -39.37164 -37.80393 -34.98181 -34.05755 -32.92120 -32.05704 -30.13392 -29.47127 -29.41240 -25.66931 -24.92966 -24.01041 -22.04883 -21.28999 -20.93690 -19.96941 -17.94985 -16.63588 -16.51455 -16.33244 -16.17728 -15.66807 -15.13790 -15.09882 -14.50841 -14.31467 -14.11689 -13.82162 -13.55570 -13.29072 -13.11009 -13.07992 -12.83946 -12.38916 -12.33385 -12.10900 -11.84763 -11.59651 -11.49918 -11.25116 -11.06296 -10.96043 -10.81282 -10.67370 -10.38090 -9.90233 -9.53863 -9.25667 -8.90997 -8.61379 -8.40996 -8.23603 -6.12461 -4.15567 1.09008 1.24922 2.81064 2.87030 3.27410 3.33679 3.37650 3.50538 3.82655 4.39534 4.47782 4.56443 4.68497 4.80943 4.83959 4.92840 5.01509 5.08411 5.24617 5.31652 5.33524 5.35370 5.41160 5.46454 5.50087 5.54926 5.61324 5.68123 5.76021 6.03814 6.12758 6.26869 6.27465 6.28882 6.38891 6.62173 6.67817 6.82330 7.24249 7.46980 7.57007 7.84913 7.90764 8.23158 8.52542 8.90310 9.49476 10.99070 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034056 B = 0.002180 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.971195 B =12841.913968 C =13622.226902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.159 4.159 4 C -0.082 4.082 5 C -0.126 4.126 6 C -0.104 4.104 7 C 0.138 3.862 8 O -0.314 6.314 9 C 0.076 3.924 10 C -0.141 4.141 11 C 0.511 3.489 12 O -0.554 6.554 13 N -0.719 5.719 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.205 4.205 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 26.976 0.036 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.177 4.177 4 C -0.100 4.100 5 C -0.127 4.127 6 C -0.160 4.160 7 C 0.092 3.908 8 O -0.228 6.228 9 C 0.001 3.999 10 C -0.181 4.181 11 C 0.296 3.704 12 O -0.433 6.433 13 N -0.368 5.368 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.224 4.224 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.234 0.766 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.172 26.805 0.042 26.893 hybrid contribution -0.182 -1.099 -0.015 1.114 sum -2.354 25.706 0.027 25.814 Atomic orbital electron populations 1.20826 0.91046 1.02926 1.02525 1.19712 0.96044 0.92490 0.97073 1.20898 0.94098 0.97409 1.05273 1.20833 0.93968 0.96714 0.98509 1.19262 0.96555 0.90324 1.06566 1.20592 0.90538 1.02700 1.02217 1.18767 0.90246 0.85540 0.96215 1.85965 1.36074 1.12359 1.88404 1.22449 0.93301 0.81158 1.03014 1.21486 0.99315 0.91398 1.05919 1.20184 0.88374 0.85007 0.76848 1.90689 1.14299 1.87583 1.50696 1.46310 1.10909 1.06260 1.73356 1.21756 0.94979 0.82508 1.00876 1.19331 0.94739 0.90561 0.97906 1.21043 0.93214 0.90397 1.51477 0.92244 1.25004 0.94985 0.99376 0.94953 1.69949 1.07783 1.25235 1.50276 0.86503 0.80190 0.82595 0.78217 1.20537 1.21144 1.19727 1.21236 0.92987 0.99254 1.08882 0.90952 0.91417 0.91332 0.86095 0.85544 0.91507 0.91877 0.91078 0.91062 0.91084 0.87875 0.87876 0.76643 0.92459 0.92469 0.95896 0.95880 0.92805 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.05 -0.53 5.88 -104.64 -0.62 -1.14 16 3 C -0.16 -1.43 9.70 -39.56 -0.38 -1.81 16 4 C -0.08 -0.74 9.70 -39.60 -0.38 -1.13 16 5 C -0.13 -1.32 5.89 -104.47 -0.62 -1.94 16 6 C -0.10 -0.89 9.79 36.01 0.35 -0.54 16 7 C 0.14 1.64 6.66 -39.22 -0.26 1.38 16 8 O -0.31 -3.79 9.18 -19.44 -0.18 -3.97 16 9 C 0.08 0.91 4.03 37.16 0.15 1.06 16 10 C -0.14 -1.61 6.07 -27.88 -0.17 -1.78 16 11 C 0.51 8.10 7.83 -10.98 -0.09 8.01 16 12 O -0.55 -10.78 15.98 5.56 0.09 -10.69 16 13 N -0.72 -11.95 5.56 -60.30 -0.33 -12.28 16 14 C 0.12 2.51 5.61 -4.05 -0.02 2.49 16 15 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.20 -2.33 8.69 -39.43 -0.34 -2.67 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.07 0.65 7.53 -51.93 -0.39 0.26 16 33 H 0.07 0.88 7.62 -51.93 -0.40 0.49 16 34 H 0.07 0.88 7.62 -51.93 -0.40 0.48 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 5.65 8.47 -40.82 -0.35 5.31 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.13 1.46 6.30 -52.49 -0.33 1.13 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -31.75 363.48 -8.69 -40.44 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.89 Total: 1.57 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.57 Total: -11.59 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.40 Total: -37.45 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.09 Total: -14.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.75 -8.69 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342645666.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.189 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds