Wall clock time and date at job start Tue Mar 31 2020 06:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38284 * 119.97257 * 2 1 4 4 C 1.38243 * 120.11161 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.05291 * 359.77102 * 4 3 2 6 6 C 1.50703 * 120.02521 * 180.25246 * 5 4 3 7 7 C 1.38707 * 119.94502 * 0.52634 * 5 4 3 8 8 O 1.35904 * 120.05375 * 179.72566 * 7 5 4 9 9 C 1.42903 * 116.99628 * 179.72747 * 8 7 5 10 10 C 1.53000 * 109.46726 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 O 1.21273 * 120.00140 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00054 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47194 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47084 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00280 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99788 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99600 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47070 * 90.00336 * 20 18 16 22 22 H 1.48502 * 109.46496 * 209.99700 * 20 18 16 23 23 H 1.48500 * 109.47072 * 329.99934 * 20 18 16 24 24 C 1.38129 * 119.96964 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46814 * 269.97474 * 1 2 3 26 26 H 1.09001 * 109.46866 * 29.97774 * 1 2 3 27 27 H 1.09003 * 109.47124 * 149.97808 * 1 2 3 28 28 H 1.08005 * 119.94205 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.97239 * 180.02562 * 4 3 2 30 30 H 1.08995 * 109.47019 * 270.27636 * 6 5 4 31 31 H 1.08998 * 109.47090 * 30.27533 * 6 5 4 32 32 H 1.09005 * 109.47221 * 150.27358 * 6 5 4 33 33 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 34 34 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 35 35 H 1.09001 * 109.47194 * 299.99575 * 10 9 8 36 36 H 1.08992 * 109.47399 * 59.99748 * 10 9 8 37 37 H 0.97005 * 119.99680 * 359.97438 * 13 11 10 38 38 H 1.08998 * 109.47245 * 300.00495 * 14 13 11 39 39 H 1.09002 * 109.47021 * 59.99873 * 14 13 11 40 40 H 1.09001 * 109.47375 * 300.00051 * 15 14 13 41 41 H 1.09002 * 109.47045 * 60.00127 * 15 14 13 42 42 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.02665 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2013 0.0005 5 6 4.2752 0.0070 0.0059 6 6 5.7822 0.0114 0.0122 7 6 3.5846 -1.1959 -0.0004 8 8 4.2658 -2.3719 -0.0008 9 6 3.4892 -3.5714 -0.0013 10 6 4.4231 -4.7834 -0.0011 11 6 3.6040 -6.0485 -0.0023 12 8 2.3929 -5.9868 -0.0028 13 7 4.2177 -7.2485 -0.0018 14 6 3.4216 -8.4783 -0.0024 15 6 4.3554 -9.6903 -0.0023 16 6 3.5364 -10.9554 -0.0036 17 1 2.4579 -10.9005 -0.0048 18 6 4.1642 -12.1829 -0.0032 19 7 5.4776 -12.2499 -0.0012 20 14 3.1490 -13.7511 -0.0054 21 1 2.8822 -14.1660 -1.4061 22 1 3.8969 -14.8258 0.6952 23 1 1.8611 -13.5080 0.6928 24 6 2.1971 -1.1966 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6565 2.1325 -0.0004 29 1 4.1176 2.1381 0.0010 30 1 6.1498 0.0154 -1.0139 31 1 6.1408 0.9010 0.5300 32 1 6.1460 -0.8790 0.5251 33 1 2.8605 -3.5969 -0.8914 34 1 2.8604 -3.5975 0.8886 35 1 5.0522 -4.7575 -0.8909 36 1 5.0515 -4.7578 0.8890 37 1 5.1865 -7.2978 -0.0011 38 1 2.7921 -8.5040 0.8870 39 1 2.7935 -8.5041 -0.8929 40 1 4.9845 -9.6643 -0.8920 41 1 4.9838 -9.6647 0.8880 42 1 5.9193 -13.1135 -0.0013 43 1 1.6570 -2.1319 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342645666.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:36 Heat of formation + Delta-G solvation = -100.233960 kcal Electronic energy + Delta-G solvation = -21783.411156 eV Core-core repulsion = 18405.908724 eV Total energy + Delta-G solvation = -3377.502431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37978 -40.66942 -38.64735 -36.65393 -34.84421 -34.77844 -33.15794 -31.45979 -30.69474 -30.08392 -27.18201 -25.85777 -25.20394 -23.13019 -22.63945 -22.03825 -21.22590 -18.93633 -18.49820 -17.52349 -17.51098 -17.22149 -16.61117 -16.41110 -16.39542 -16.37554 -15.23154 -15.11900 -14.71090 -14.61462 -14.51541 -14.25610 -14.09807 -13.80221 -13.45870 -13.45124 -13.23465 -12.93780 -12.83060 -12.64075 -12.53317 -12.37135 -12.24091 -12.19117 -11.73698 -11.68849 -11.67733 -11.48166 -10.94559 -10.61619 -10.05566 -9.66373 -9.01513 -8.25249 -6.35651 0.34450 0.47859 1.41224 1.41482 1.52892 1.57511 1.78735 2.38111 2.64938 2.75771 3.09547 3.58668 3.80530 3.87092 3.89818 4.01600 4.11869 4.22651 4.32631 4.40617 4.47206 4.51923 4.60762 4.69469 4.69555 4.77881 4.80854 4.82572 4.84449 4.86822 4.89632 5.16052 5.26576 5.37976 5.39734 5.47367 5.54790 5.57283 5.65981 5.77517 5.89761 6.14952 6.38953 6.57041 6.77692 7.21134 7.33703 8.86445 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034056 B = 0.002180 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.971195 B =12841.913968 C =13622.226902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.159 4.159 4 C -0.083 4.083 5 C -0.139 4.139 6 C -0.102 4.102 7 C 0.111 3.889 8 O -0.317 6.317 9 C 0.082 3.918 10 C -0.126 4.126 11 C 0.512 3.488 12 O -0.591 6.591 13 N -0.714 5.714 14 C 0.140 3.860 15 C 0.022 3.978 16 C -0.548 4.548 17 H 0.058 0.942 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.223 4.223 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.414 0.586 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.266 0.734 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 28.535 0.031 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.177 4.177 4 C -0.100 4.100 5 C -0.140 4.140 6 C -0.158 4.158 7 C 0.066 3.934 8 O -0.231 6.231 9 C 0.006 3.994 10 C -0.166 4.166 11 C 0.300 3.700 12 O -0.473 6.473 13 N -0.365 5.365 14 C 0.016 3.984 15 C -0.016 4.016 16 C -0.586 4.586 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.242 4.242 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.164 0.836 29 H 0.173 0.827 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.250 0.750 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.069 28.389 0.035 28.464 hybrid contribution -0.216 -1.483 -0.013 1.498 sum -2.285 26.906 0.022 27.003 Atomic orbital electron populations 1.20863 0.89664 1.03556 1.03124 1.20043 0.97278 0.92425 0.96781 1.21263 0.94431 0.98006 1.04005 1.21216 0.94233 0.97310 0.97266 1.19617 0.97668 0.90284 1.06429 1.20612 0.89354 1.03200 1.02658 1.19074 0.90687 0.85866 0.97759 1.85927 1.36001 1.12393 1.88799 1.22298 0.93265 0.81698 1.02141 1.21394 0.98649 0.88328 1.08214 1.20864 0.88168 0.85755 0.75226 1.90677 1.16296 1.88116 1.52192 1.46109 1.11408 1.05379 1.73624 1.21234 0.94210 0.83078 0.99879 1.19143 0.94600 0.91365 0.96471 1.21473 0.93609 0.91955 1.51558 0.92346 1.25874 0.96131 1.02788 0.94450 1.70049 1.09276 1.26235 1.50959 0.85451 0.78706 0.78411 0.78518 1.19766 1.20520 1.19105 1.21327 0.93165 0.99687 1.10028 0.90297 0.89658 0.91850 0.83559 0.82745 0.91035 0.89931 0.92025 0.92064 0.92084 0.85465 0.85457 0.74995 0.93497 0.93486 0.97201 0.97189 0.92526 0.85977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 10.01 71.24 0.71 -0.93 16 2 C -0.07 -1.24 5.88 -19.88 -0.12 -1.36 16 3 C -0.16 -2.54 9.70 22.28 0.22 -2.32 16 4 C -0.08 -1.31 9.70 22.25 0.22 -1.09 16 5 C -0.14 -2.75 5.89 -19.77 -0.12 -2.87 16 6 C -0.10 -1.58 9.79 71.24 0.70 -0.88 16 7 C 0.11 2.63 6.66 22.50 0.15 2.78 16 8 O -0.32 -7.57 9.18 -92.47 -0.85 -8.42 16 9 C 0.08 1.96 4.03 71.98 0.29 2.25 16 10 C -0.13 -2.72 6.07 29.85 0.18 -2.54 16 11 C 0.51 16.02 7.83 87.66 0.69 16.71 16 12 O -0.59 -23.33 15.98 -3.01 -0.05 -23.38 16 13 N -0.71 -23.49 5.56 -463.07 -2.57 -26.06 16 14 C 0.14 5.88 5.61 86.38 0.48 6.37 16 15 C 0.02 1.08 5.09 29.85 0.15 1.23 16 16 C -0.55 -30.40 9.11 25.60 0.23 -30.16 16 17 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 18 C 0.01 0.36 5.46 84.66 0.46 0.82 16 19 N -0.93 -53.95 13.29 21.45 0.28 -53.66 16 20 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C -0.22 -5.16 8.69 22.37 0.19 -4.96 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.06 0.95 8.08 -2.39 -0.02 0.93 16 28 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 32 H 0.06 1.06 7.53 -2.38 -0.02 1.04 16 33 H 0.06 1.57 7.62 -2.39 -0.02 1.55 16 34 H 0.06 1.56 7.62 -2.39 -0.02 1.54 16 35 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.41 11.33 8.47 -92.70 -0.79 10.54 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.12 2.91 6.30 -2.91 -0.02 2.89 16 Total: -1.00 -68.56 363.48 3.49 -65.07 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.21 Total: 17.96 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 4.44 Total: -16.97 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.29 Total: -79.72 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.90 Total: -31.80 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -68.56 3.49 -65.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342645666.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.168 kcal (2) G-P(sol) polarization free energy of solvation -68.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds