Wall clock time and date at job start Tue Mar 31 2020 06:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.53002 * 109.47152 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46832 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00659 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00089 * 179.97438 * 12 11 10 15 15 C 1.46491 * 120.00331 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47444 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47496 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99774 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99987 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99605 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99850 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47307 * 89.99992 * 21 19 17 23 23 H 1.48503 * 109.46824 * 210.00015 * 21 19 17 24 24 H 1.48503 * 109.47423 * 329.99778 * 21 19 17 25 25 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 26 26 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 27 27 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 28 28 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 30 30 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 32 32 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 33 33 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 34 34 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 35 35 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 36 36 H 1.08992 * 109.47010 * 300.00255 * 11 10 9 37 37 H 1.08995 * 109.46796 * 60.00374 * 11 10 9 38 38 H 0.97002 * 119.99629 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.46949 * 299.99836 * 15 14 12 40 40 H 1.09000 * 109.47540 * 60.00320 * 15 14 12 41 41 H 1.08998 * 109.47189 * 300.00004 * 16 15 14 42 42 H 1.09007 * 109.47221 * 59.99814 * 16 15 14 43 43 H 0.96999 * 119.99303 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4398 -4.2587 1.0547 12 6 0.0941 -4.8548 2.3949 13 8 0.4193 -4.2843 3.4146 14 7 -0.5774 -6.0216 2.4604 15 6 -0.9140 -6.6009 3.7632 16 6 -1.6691 -7.9155 3.5571 17 6 -2.0148 -8.5117 4.8973 18 1 -1.7245 -8.0041 5.8052 19 6 -2.7007 -9.7059 4.9643 20 7 -3.0028 -10.2260 6.1338 21 14 -3.2009 -10.5851 3.3938 22 1 -2.1193 -11.5152 2.9812 23 1 -4.4496 -11.3526 3.6324 24 1 -3.4315 -9.5863 2.3193 25 1 -0.3633 0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6584 2.1313 -0.0004 29 1 4.1197 2.1327 0.0107 30 1 5.3552 0.0039 0.0106 31 1 4.5238 -2.8172 1.0286 32 1 3.7611 -3.2610 -0.5173 33 1 5.3001 -2.3666 -0.5085 34 1 2.1104 -3.1353 1.8209 35 1 0.5677 -2.2476 1.8171 36 1 -0.4755 -4.0678 0.4945 37 1 1.0676 -4.9550 0.4988 38 1 -0.8378 -6.4777 1.6449 39 1 0.0015 -6.7921 4.3232 40 1 -1.5414 -5.9045 4.3194 41 1 -2.5845 -7.7247 2.9969 42 1 -1.0413 -8.6119 3.0011 43 1 -3.4850 -11.0663 6.1809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342650375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:40 Heat of formation + Delta-G solvation = -74.933753 kcal Electronic energy + Delta-G solvation = -22152.460235 eV Core-core repulsion = 18776.054903 eV Total energy + Delta-G solvation = -3376.405332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.50735 -39.41811 -37.52490 -35.08077 -33.85560 -32.88301 -32.31589 -31.05730 -29.98780 -27.32460 -26.90672 -25.37921 -23.48431 -21.97381 -21.15866 -20.83902 -20.06881 -18.12344 -16.96105 -16.87704 -16.48795 -15.62275 -15.60667 -15.56285 -14.88581 -14.40777 -14.25721 -14.20200 -13.65583 -13.45018 -13.27548 -13.24744 -13.22588 -12.94259 -12.61844 -12.21145 -12.13793 -12.03125 -11.78519 -11.52250 -11.35670 -11.25272 -11.21319 -10.43070 -10.32396 -9.99780 -9.98590 -9.60216 -9.33660 -8.86861 -8.75172 -8.68117 -8.58604 -6.13339 -4.13715 0.92180 1.04673 2.83088 2.97127 3.23542 3.31294 3.32353 3.47507 3.93662 4.35553 4.47892 4.53913 4.67699 4.71081 4.85841 4.96984 5.05867 5.10231 5.19496 5.23655 5.29207 5.37250 5.39292 5.42942 5.51967 5.53993 5.61684 5.64150 5.87149 5.98941 6.06895 6.16252 6.16883 6.17903 6.30677 6.51586 6.52049 6.68415 7.09201 7.19552 7.35147 7.63780 7.81547 8.39767 8.48065 8.90859 9.46587 10.99668 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034748 B = 0.002359 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.596855 B =11867.970580 C =12016.715425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.098 4.098 7 C -0.115 4.115 8 C 0.098 3.902 9 O -0.335 6.335 10 C 0.083 3.917 11 C -0.140 4.140 12 C 0.511 3.489 13 O -0.549 6.549 14 N -0.724 5.724 15 C 0.129 3.871 16 C -0.022 4.022 17 C -0.524 4.524 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.898 5.898 21 Si 0.883 3.117 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.398 0.602 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.022 0.978 42 H 0.018 0.982 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.860 20.586 -17.241 29.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.135 4.135 4 C -0.137 4.137 5 C -0.135 4.135 6 C -0.098 4.098 7 C -0.171 4.171 8 C 0.054 3.946 9 O -0.253 6.253 10 C 0.009 3.991 11 C -0.180 4.180 12 C 0.296 3.704 13 O -0.427 6.427 14 N -0.374 5.374 15 C 0.007 3.993 16 C -0.060 4.060 17 C -0.562 4.562 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.536 5.536 21 Si 0.710 3.290 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.231 0.769 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.922 20.704 -16.535 29.055 hybrid contribution -0.390 -0.731 -0.938 1.252 sum 11.532 19.973 -17.473 28.935 Atomic orbital electron populations 1.20728 0.90583 1.02959 1.02636 1.20256 0.96859 0.92500 1.00241 1.20934 0.94206 0.97112 1.01215 1.21138 0.94245 0.98056 1.00290 1.20936 0.99830 0.91498 1.01207 1.20254 0.93044 0.96321 1.00214 1.20737 0.99557 0.94243 1.02612 1.18291 0.89337 0.84975 1.01995 1.85904 1.74718 1.34926 1.29704 1.22356 0.99560 0.93728 0.83454 1.21487 1.02844 0.97096 0.96623 1.20241 0.78283 0.81376 0.90502 1.90713 1.53948 1.61234 1.36829 1.46304 1.57033 1.22879 1.11160 1.21532 0.99706 0.95802 0.82240 1.19798 0.95323 0.91943 0.98926 1.20914 1.36870 1.06690 0.91749 0.90629 1.25011 0.95206 0.96982 0.96134 1.69905 1.40218 1.19678 1.23800 0.86742 0.78298 0.79943 0.84022 1.20215 1.21255 1.19074 0.90869 0.91155 0.91512 0.85720 0.85838 0.85724 0.91090 0.90709 0.91446 0.91920 0.91895 0.88038 0.88036 0.76874 0.91900 0.91871 0.95963 0.96402 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.79 36.01 0.35 -0.64 16 2 C -0.10 -1.01 5.89 -104.47 -0.62 -1.63 16 3 C -0.12 -1.03 9.70 -39.60 -0.38 -1.41 16 4 C -0.12 -0.98 10.04 -39.56 -0.40 -1.37 16 5 C -0.12 -1.03 9.70 -39.61 -0.38 -1.41 16 6 C -0.10 -1.01 5.89 -104.47 -0.62 -1.62 16 7 C -0.11 -1.01 9.79 36.01 0.35 -0.66 16 8 C 0.10 1.11 5.67 -39.22 -0.22 0.89 16 9 O -0.34 -3.90 8.33 -19.42 -0.16 -4.06 16 10 C 0.08 0.99 4.98 37.16 0.18 1.18 16 11 C -0.14 -1.54 6.07 -27.88 -0.17 -1.71 16 12 C 0.51 7.84 7.83 -10.99 -0.09 7.76 16 13 O -0.55 -10.62 15.98 5.55 0.09 -10.54 16 14 N -0.72 -11.36 5.56 -60.30 -0.33 -11.70 16 15 C 0.13 2.58 5.61 -4.05 -0.02 2.56 16 16 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 17 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 21 Si 0.88 20.86 27.47 -169.99 -4.67 16.20 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.68 6.30 -51.93 -0.33 0.35 16 27 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 29 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.06 0.79 7.19 -51.93 -0.37 0.42 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 5.09 8.47 -40.82 -0.35 4.74 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 42 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -32.73 360.16 -8.29 -41.02 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.86 Total: 1.80 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -2.55 Total: -11.72 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.44 Total: -38.11 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.07 Total: -14.60 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.73 -8.29 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.917 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds