Wall clock time and date at job start Tue Mar 31 2020 06:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.53002 * 109.47152 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46832 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00659 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00089 * 179.97438 * 12 11 10 15 15 C 1.46491 * 120.00331 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47444 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47496 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99774 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99987 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99605 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99850 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47307 * 89.99992 * 21 19 17 23 23 H 1.48503 * 109.46824 * 210.00015 * 21 19 17 24 24 H 1.48503 * 109.47423 * 329.99778 * 21 19 17 25 25 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 26 26 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 27 27 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 28 28 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 30 30 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 32 32 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 33 33 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 34 34 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 35 35 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 36 36 H 1.08992 * 109.47010 * 300.00255 * 11 10 9 37 37 H 1.08995 * 109.46796 * 60.00374 * 11 10 9 38 38 H 0.97002 * 119.99629 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.46949 * 299.99836 * 15 14 12 40 40 H 1.09000 * 109.47540 * 60.00320 * 15 14 12 41 41 H 1.08998 * 109.47189 * 300.00004 * 16 15 14 42 42 H 1.09007 * 109.47221 * 59.99814 * 16 15 14 43 43 H 0.96999 * 119.99303 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4398 -4.2587 1.0547 12 6 0.0941 -4.8548 2.3949 13 8 0.4193 -4.2843 3.4146 14 7 -0.5774 -6.0216 2.4604 15 6 -0.9140 -6.6009 3.7632 16 6 -1.6691 -7.9155 3.5571 17 6 -2.0148 -8.5117 4.8973 18 1 -1.7245 -8.0041 5.8052 19 6 -2.7007 -9.7059 4.9643 20 7 -3.0028 -10.2260 6.1338 21 14 -3.2009 -10.5851 3.3938 22 1 -2.1193 -11.5152 2.9812 23 1 -4.4496 -11.3526 3.6324 24 1 -3.4315 -9.5863 2.3193 25 1 -0.3633 0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6584 2.1313 -0.0004 29 1 4.1197 2.1327 0.0107 30 1 5.3552 0.0039 0.0106 31 1 4.5238 -2.8172 1.0286 32 1 3.7611 -3.2610 -0.5173 33 1 5.3001 -2.3666 -0.5085 34 1 2.1104 -3.1353 1.8209 35 1 0.5677 -2.2476 1.8171 36 1 -0.4755 -4.0678 0.4945 37 1 1.0676 -4.9550 0.4988 38 1 -0.8378 -6.4777 1.6449 39 1 0.0015 -6.7921 4.3232 40 1 -1.5414 -5.9045 4.3194 41 1 -2.5845 -7.7247 2.9969 42 1 -1.0413 -8.6119 3.0011 43 1 -3.4850 -11.0663 6.1809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342650375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:39 Heat of formation + Delta-G solvation = -95.561687 kcal Electronic energy + Delta-G solvation = -22153.354729 eV Core-core repulsion = 18776.054903 eV Total energy + Delta-G solvation = -3377.299826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29909 -40.66610 -38.32746 -36.68178 -34.80890 -34.53066 -33.36454 -32.09193 -31.44871 -28.12315 -27.55676 -27.00093 -24.71895 -22.72706 -22.58602 -21.84579 -21.37574 -19.09091 -18.90058 -17.70535 -17.63191 -16.83148 -16.74398 -16.37610 -16.18575 -15.85308 -15.66668 -15.02528 -14.74475 -14.69512 -14.42745 -14.36837 -14.06083 -13.88916 -13.59045 -13.35515 -13.17417 -12.93356 -12.88694 -12.80945 -12.45287 -12.20804 -12.16508 -12.09341 -11.96597 -11.76183 -11.52506 -10.96370 -10.83432 -10.79037 -10.07397 -9.54603 -9.47999 -8.30355 -6.37809 0.19757 0.36300 1.39555 1.42203 1.53404 1.59511 1.98156 2.36862 2.58897 3.01525 3.04806 3.68846 3.80626 3.87353 3.97199 4.08610 4.10479 4.34585 4.37517 4.39821 4.41600 4.46990 4.59532 4.60857 4.72815 4.74674 4.75518 4.77536 4.78815 4.86772 4.91102 5.14735 5.19274 5.31521 5.40191 5.42196 5.50764 5.51170 5.60636 5.63758 5.85169 6.21633 6.51868 6.58902 6.70677 7.24423 7.26985 8.86445 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034748 B = 0.002359 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.596855 B =11867.970580 C =12016.715425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.114 4.114 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.113 4.113 8 C 0.066 3.934 9 O -0.334 6.334 10 C 0.088 3.912 11 C -0.125 4.125 12 C 0.511 3.489 13 O -0.594 6.594 14 N -0.713 5.713 15 C 0.144 3.856 16 C -0.013 4.013 17 C -0.540 4.540 18 H 0.028 0.972 19 C 0.002 3.998 20 N -0.951 5.951 21 Si 0.960 3.040 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.235 1.235 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.417 0.583 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 21.325 -20.705 32.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.115 4.115 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.141 4.141 6 C -0.115 4.115 7 C -0.169 4.169 8 C 0.023 3.977 9 O -0.252 6.252 10 C 0.014 3.986 11 C -0.164 4.164 12 C 0.299 3.701 13 O -0.475 6.475 14 N -0.365 5.365 15 C 0.020 3.980 16 C -0.051 4.051 17 C -0.579 4.579 18 H 0.046 0.954 19 C -0.195 4.195 20 N -0.591 5.591 21 Si 0.782 3.218 22 H -0.190 1.190 23 H -0.214 1.214 24 H -0.158 1.158 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.164 0.836 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.254 0.746 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.347 21.462 -20.045 31.857 hybrid contribution -0.448 -0.838 0.240 0.981 sum 11.899 20.624 -19.805 30.970 Atomic orbital electron populations 1.20739 0.89966 1.02995 1.03072 1.20530 0.97645 0.92832 1.00475 1.21260 0.94798 0.97439 1.00636 1.21525 0.94260 0.99039 0.98778 1.21265 1.01035 0.91220 1.00622 1.20528 0.92988 0.97494 1.00463 1.20735 1.00143 0.93556 1.02483 1.18603 0.90059 0.85143 1.03884 1.85889 1.74892 1.35355 1.29057 1.22205 0.98761 0.93950 0.83728 1.21400 1.04383 0.96733 0.93901 1.20964 0.76909 0.80582 0.91640 1.90702 1.55514 1.62324 1.38935 1.46028 1.57113 1.23159 1.10182 1.21032 0.98182 0.94694 0.84121 1.19658 0.96457 0.92867 0.96110 1.21270 1.36845 1.06951 0.92803 0.95408 1.26113 0.95055 0.97917 1.00395 1.70081 1.41577 1.20497 1.26938 0.85521 0.77876 0.79002 0.79361 1.18992 1.21358 1.15794 0.90166 0.92359 0.90227 0.83629 0.83140 0.83633 0.91481 0.91399 0.89699 0.93332 0.93285 0.85402 0.85385 0.74621 0.93831 0.93823 0.94355 0.94502 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 9.79 71.24 0.70 -1.17 16 2 C -0.11 -2.26 5.89 -19.77 -0.12 -2.38 16 3 C -0.12 -1.95 9.70 22.26 0.22 -1.74 16 4 C -0.12 -1.68 10.04 22.28 0.22 -1.45 16 5 C -0.12 -1.96 9.70 22.25 0.22 -1.74 16 6 C -0.11 -2.26 5.89 -19.77 -0.12 -2.37 16 7 C -0.11 -1.88 9.79 71.24 0.70 -1.19 16 8 C 0.07 1.48 5.67 22.51 0.13 1.61 16 9 O -0.33 -7.55 8.33 -92.39 -0.77 -8.32 16 10 C 0.09 2.06 4.98 71.98 0.36 2.42 16 11 C -0.12 -2.47 6.07 29.85 0.18 -2.29 16 12 C 0.51 15.16 7.83 87.66 0.69 15.85 16 13 O -0.59 -23.33 15.98 -3.05 -0.05 -23.38 16 14 N -0.71 -21.13 5.56 -463.07 -2.57 -23.70 16 15 C 0.14 5.75 5.61 86.38 0.48 6.23 16 16 C -0.01 -0.58 4.16 29.85 0.12 -0.45 16 17 C -0.54 -30.70 9.66 25.60 0.25 -30.46 16 18 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 19 C 0.00 0.13 5.47 84.66 0.46 0.59 16 20 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 21 Si 0.96 41.92 27.47 68.60 1.88 43.80 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.10 6.30 -2.39 -0.02 1.09 16 27 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 28 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 29 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 30 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.20 7.53 -2.38 -0.02 1.18 16 33 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 34 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.05 1.26 7.19 -2.39 -0.02 1.24 16 36 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.42 9.23 8.47 -92.71 -0.79 8.44 16 39 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 42 H 0.04 1.49 7.57 -2.38 -0.02 1.47 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -74.05 360.16 3.44 -70.61 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.16 Total: 18.45 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.49 Total: -18.53 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.27 Total: -82.63 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.82 Total: -31.70 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.88 Total: 43.80 kcal Total: -74.05 3.44 -70.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.952 kcal (2) G-P(sol) polarization free energy of solvation -74.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds