Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38173 * 119.97373 * 2 1 4 4 C 1.38705 * 119.94379 * 180.31418 * 3 2 1 5 5 O 1.35901 * 120.05495 * 179.68770 * 4 3 2 6 6 C 1.42900 * 117.00012 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46981 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00214 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00083 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00291 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47001 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00144 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99728 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99770 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99956 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46922 * 90.00359 * 15 13 11 17 17 H 1.48500 * 109.47091 * 209.99798 * 15 13 11 18 18 H 1.48497 * 109.47216 * 330.00188 * 15 13 11 19 19 C 1.38759 * 119.89098 * 359.70185 * 4 3 2 20 20 C 1.38122 * 119.93996 * 0.02562 * 19 4 3 21 21 C 1.38244 * 119.97307 * 179.74527 * 2 1 3 22 22 C 1.50701 * 119.94590 * 359.97438 * 21 2 1 23 23 C 1.52998 * 109.47131 * 113.97338 * 22 21 2 24 24 C 1.52998 * 109.47385 * 233.97562 * 22 21 2 25 25 H 1.08999 * 109.47647 * 264.65377 * 1 2 3 26 26 H 1.08998 * 109.47197 * 24.65946 * 1 2 3 27 27 H 1.09009 * 109.46815 * 144.65900 * 1 2 3 28 28 H 1.07996 * 120.02521 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47159 * 299.99822 * 6 5 4 30 30 H 1.09001 * 109.47251 * 59.99687 * 6 5 4 31 31 H 0.97007 * 119.99589 * 359.97438 * 9 7 6 32 32 H 1.08992 * 109.46793 * 299.99558 * 10 9 7 33 33 H 1.09001 * 109.46944 * 59.99931 * 10 9 7 34 34 H 0.97000 * 119.99447 * 179.97438 * 14 13 11 35 35 H 1.07994 * 120.02488 * 179.97438 * 19 4 3 36 36 H 1.08006 * 119.96667 * 179.97438 * 20 19 4 37 37 H 1.09002 * 109.46715 * 353.97390 * 22 21 2 38 38 H 1.09002 * 109.47278 * 60.00397 * 23 22 21 39 39 H 1.08998 * 109.47263 * 300.00451 * 23 22 21 40 40 H 1.08999 * 109.47169 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.47151 * 300.00169 * 24 22 21 42 42 H 1.09003 * 109.46779 * 59.99619 * 24 22 21 43 43 H 1.08999 * 109.46857 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1962 -0.0066 5 8 4.2655 2.3721 -0.0130 6 6 5.6924 2.2953 -0.0202 7 6 6.2704 3.6870 -0.0272 8 8 5.5331 4.6499 -0.0267 9 7 7.6068 3.8616 -0.0341 10 6 8.1687 5.2146 -0.0404 11 6 9.6735 5.1335 -0.0468 12 1 10.1624 4.1704 -0.0466 13 6 10.4261 6.2887 -0.0529 14 7 11.7394 6.2179 -0.0589 15 14 9.5805 7.9543 -0.0539 16 1 9.3621 8.3994 1.3460 17 1 10.4348 8.9428 -0.7599 18 1 8.2725 7.8450 -0.7483 19 6 4.2752 -0.0071 -0.0069 20 6 3.5804 -1.2009 -0.0012 21 6 2.1976 -1.1975 0.0053 22 6 1.4422 -2.5016 0.0117 23 6 1.6933 -3.2428 -1.3030 24 6 1.9211 -3.3627 1.1822 25 1 -0.3634 -0.0957 1.0231 26 1 -0.3633 0.9339 -0.4288 27 1 -0.3633 -0.8384 -0.5945 28 1 1.6573 2.1322 -0.0004 29 1 6.0322 1.7649 0.8694 30 1 6.0230 1.7604 -0.9105 31 1 8.1965 3.0915 -0.0342 32 1 7.8293 5.7448 -0.9302 33 1 7.8378 5.7496 0.8498 34 1 12.2688 7.0307 -0.0636 35 1 5.3551 -0.0102 -0.0125 36 1 4.1178 -2.1378 -0.0019 37 1 0.3758 -2.3031 0.1191 38 1 2.7597 -3.4412 -1.4104 39 1 1.3521 -2.6293 -2.1369 40 1 1.1466 -4.1858 -1.2986 41 1 2.9876 -3.5610 1.0749 42 1 1.7423 -2.8345 2.1188 43 1 1.3744 -4.3056 1.1870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343898184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = -69.043701 kcal Electronic energy + Delta-G solvation = -22193.954842 eV Core-core repulsion = 18817.804922 eV Total energy + Delta-G solvation = -3376.149920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54983 -39.21558 -37.96531 -35.01261 -34.37042 -32.78913 -32.44129 -30.21409 -28.75620 -27.44352 -27.20287 -26.73340 -23.54256 -22.43025 -21.40995 -20.18335 -19.92357 -18.09133 -17.41891 -16.60524 -16.25163 -15.90280 -15.54063 -15.16244 -14.51143 -14.45512 -14.45193 -14.03563 -13.98460 -13.48695 -13.29634 -13.21652 -12.94676 -12.61904 -12.50001 -12.46845 -12.35837 -12.27045 -11.91116 -11.50507 -11.43365 -11.07300 -10.92351 -10.83673 -10.76357 -10.68358 -10.00697 -9.55467 -9.31949 -8.93094 -8.82723 -8.27444 -8.13536 -6.25510 -4.28487 1.17709 1.30053 2.82363 3.03854 3.25009 3.31995 3.40088 3.56567 4.07917 4.30289 4.41821 4.51010 4.69894 4.77702 4.90674 4.91891 5.04175 5.07378 5.08902 5.13438 5.18986 5.24272 5.31252 5.32255 5.38698 5.48793 5.52984 5.59968 5.65988 5.72756 5.92382 5.94659 5.97307 6.20013 6.27111 6.51177 6.63292 6.73476 7.00434 7.08675 7.30889 7.34767 8.04615 8.40464 8.67795 8.79890 9.33844 10.86224 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036928 B = 0.002486 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.057991 B =11259.717206 C =11817.408864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.046 4.046 3 C -0.150 4.150 4 C 0.134 3.866 5 O -0.288 6.288 6 C 0.041 3.959 7 C 0.502 3.498 8 O -0.535 6.535 9 N -0.701 5.701 10 C 0.222 3.778 11 C -0.546 4.546 12 H 0.080 0.920 13 C 0.078 3.922 14 N -0.891 5.891 15 Si 0.877 3.123 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.260 1.260 19 C -0.214 4.214 20 C -0.071 4.071 21 C -0.120 4.120 22 C -0.056 4.056 23 C -0.144 4.144 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.268 0.732 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.437 -20.051 0.087 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.046 4.046 3 C -0.168 4.168 4 C 0.088 3.912 5 O -0.200 6.200 6 C -0.038 4.038 7 C 0.286 3.714 8 O -0.412 6.412 9 N -0.351 5.351 10 C 0.100 3.900 11 C -0.583 4.583 12 H 0.098 0.902 13 C -0.126 4.126 14 N -0.528 5.528 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.185 1.185 19 C -0.233 4.233 20 C -0.089 4.089 21 C -0.121 4.121 22 C -0.075 4.075 23 C -0.201 4.201 24 C -0.202 4.202 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.844 -19.012 0.080 28.212 hybrid contribution 0.449 0.397 0.027 0.600 sum -20.395 -18.615 0.108 27.613 Atomic orbital electron populations 1.20846 0.91010 1.02937 1.02485 1.19505 0.95802 0.91631 0.97683 1.20286 0.90885 0.98595 1.07072 1.19073 0.91894 0.84648 0.95542 1.86180 1.18352 1.27355 1.88119 1.22576 0.80056 0.97639 1.03486 1.19929 0.83494 0.89646 0.78375 1.90701 1.59261 1.41819 1.49448 1.46057 1.04688 1.11641 1.72732 1.19547 0.94425 0.78954 0.97051 1.21059 0.88134 0.95501 1.53646 0.90154 1.24791 0.94727 0.99287 0.93781 1.69876 1.04534 1.29189 1.49186 0.86816 0.80247 0.83531 0.79119 1.19777 1.20823 1.18461 1.21267 1.00361 0.92146 1.09510 1.20711 0.93449 0.97234 0.97469 1.19550 0.93506 0.94113 1.04893 1.20120 0.99636 0.92011 0.95686 1.21855 1.01913 0.99687 0.96655 1.21865 1.01375 0.99111 0.97802 0.90947 0.91338 0.91041 0.85112 0.89231 0.89236 0.76824 0.95457 0.95919 0.92183 0.85337 0.85927 0.90101 0.92530 0.92594 0.92578 0.92512 0.92563 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.13 36.00 0.33 -0.53 16 2 C -0.05 -0.47 5.88 -104.65 -0.62 -1.09 16 3 C -0.15 -1.85 9.62 -39.43 -0.38 -2.23 16 4 C 0.13 1.82 6.69 -39.22 -0.26 1.56 16 5 O -0.29 -4.65 9.67 -39.34 -0.38 -5.03 16 6 C 0.04 0.59 5.22 36.01 0.19 0.77 16 7 C 0.50 9.69 7.91 -10.99 -0.09 9.61 16 8 O -0.54 -12.76 16.50 -14.35 -0.24 -12.99 16 9 N -0.70 -13.87 5.55 -61.47 -0.34 -14.21 16 10 C 0.22 5.41 4.50 -5.19 -0.02 5.38 16 11 C -0.55 -14.75 9.83 -34.44 -0.34 -15.09 16 12 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 13 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 14 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 15 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 19 C -0.21 -2.42 9.04 -39.43 -0.36 -2.77 16 20 C -0.07 -0.70 8.75 -39.61 -0.35 -1.04 16 21 C -0.12 -1.15 4.79 -104.60 -0.50 -1.65 16 22 C -0.06 -0.40 2.82 -91.77 -0.26 -0.66 16 23 C -0.14 -0.94 9.06 37.16 0.34 -0.60 16 24 C -0.14 -0.94 8.94 37.16 0.33 -0.61 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 27 H 0.07 0.44 6.54 -51.92 -0.34 0.10 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.09 1.03 7.66 -51.93 -0.40 0.63 16 30 H 0.09 1.03 7.66 -51.93 -0.40 0.63 16 31 H 0.40 6.67 8.32 -40.82 -0.34 6.33 16 32 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 33 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 36 H 0.12 0.97 7.10 -52.48 -0.37 0.60 16 37 H 0.08 0.52 5.72 -51.93 -0.30 0.23 16 38 H 0.06 0.37 7.74 -51.93 -0.40 -0.03 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.37 7.08 -51.93 -0.37 0.00 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -33.08 353.39 -8.15 -41.23 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.54 Total: 1.32 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.08 Total: -6.86 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.43 Total: -39.64 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.62 Total: -18.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.08 -8.15 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343898184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.816 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds