Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38173 * 119.97373 * 2 1 4 4 C 1.38705 * 119.94379 * 180.31418 * 3 2 1 5 5 O 1.35901 * 120.05495 * 179.68770 * 4 3 2 6 6 C 1.42900 * 117.00012 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46981 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00214 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00083 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00291 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47001 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00144 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99728 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99770 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99956 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46922 * 90.00359 * 15 13 11 17 17 H 1.48500 * 109.47091 * 209.99798 * 15 13 11 18 18 H 1.48497 * 109.47216 * 330.00188 * 15 13 11 19 19 C 1.38759 * 119.89098 * 359.70185 * 4 3 2 20 20 C 1.38122 * 119.93996 * 0.02562 * 19 4 3 21 21 C 1.38244 * 119.97307 * 179.74527 * 2 1 3 22 22 C 1.50701 * 119.94590 * 359.97438 * 21 2 1 23 23 C 1.52998 * 109.47131 * 113.97338 * 22 21 2 24 24 C 1.52998 * 109.47385 * 233.97562 * 22 21 2 25 25 H 1.08999 * 109.47647 * 264.65377 * 1 2 3 26 26 H 1.08998 * 109.47197 * 24.65946 * 1 2 3 27 27 H 1.09009 * 109.46815 * 144.65900 * 1 2 3 28 28 H 1.07996 * 120.02521 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47159 * 299.99822 * 6 5 4 30 30 H 1.09001 * 109.47251 * 59.99687 * 6 5 4 31 31 H 0.97007 * 119.99589 * 359.97438 * 9 7 6 32 32 H 1.08992 * 109.46793 * 299.99558 * 10 9 7 33 33 H 1.09001 * 109.46944 * 59.99931 * 10 9 7 34 34 H 0.97000 * 119.99447 * 179.97438 * 14 13 11 35 35 H 1.07994 * 120.02488 * 179.97438 * 19 4 3 36 36 H 1.08006 * 119.96667 * 179.97438 * 20 19 4 37 37 H 1.09002 * 109.46715 * 353.97390 * 22 21 2 38 38 H 1.09002 * 109.47278 * 60.00397 * 23 22 21 39 39 H 1.08998 * 109.47263 * 300.00451 * 23 22 21 40 40 H 1.08999 * 109.47169 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.47151 * 300.00169 * 24 22 21 42 42 H 1.09003 * 109.46779 * 59.99619 * 24 22 21 43 43 H 1.08999 * 109.46857 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1962 -0.0066 5 8 4.2655 2.3721 -0.0130 6 6 5.6924 2.2953 -0.0202 7 6 6.2704 3.6870 -0.0272 8 8 5.5331 4.6499 -0.0267 9 7 7.6068 3.8616 -0.0341 10 6 8.1687 5.2146 -0.0404 11 6 9.6735 5.1335 -0.0468 12 1 10.1624 4.1704 -0.0466 13 6 10.4261 6.2887 -0.0529 14 7 11.7394 6.2179 -0.0589 15 14 9.5805 7.9543 -0.0539 16 1 9.3621 8.3994 1.3460 17 1 10.4348 8.9428 -0.7599 18 1 8.2725 7.8450 -0.7483 19 6 4.2752 -0.0071 -0.0069 20 6 3.5804 -1.2009 -0.0012 21 6 2.1976 -1.1975 0.0053 22 6 1.4422 -2.5016 0.0117 23 6 1.6933 -3.2428 -1.3030 24 6 1.9211 -3.3627 1.1822 25 1 -0.3634 -0.0957 1.0231 26 1 -0.3633 0.9339 -0.4288 27 1 -0.3633 -0.8384 -0.5945 28 1 1.6573 2.1322 -0.0004 29 1 6.0322 1.7649 0.8694 30 1 6.0230 1.7604 -0.9105 31 1 8.1965 3.0915 -0.0342 32 1 7.8293 5.7448 -0.9302 33 1 7.8378 5.7496 0.8498 34 1 12.2688 7.0307 -0.0636 35 1 5.3551 -0.0102 -0.0125 36 1 4.1178 -2.1378 -0.0019 37 1 0.3758 -2.3031 0.1191 38 1 2.7597 -3.4412 -1.4104 39 1 1.3521 -2.6293 -2.1369 40 1 1.1466 -4.1858 -1.2986 41 1 2.9876 -3.5610 1.0749 42 1 1.7423 -2.8345 2.1188 43 1 1.3744 -4.3056 1.1870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343898184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = -89.250439 kcal Electronic energy + Delta-G solvation = -22194.831072 eV Core-core repulsion = 18817.804922 eV Total energy + Delta-G solvation = -3377.026150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52164 -40.54448 -39.07706 -36.25437 -35.66572 -34.47735 -33.52709 -31.42112 -30.12075 -28.40336 -27.91972 -27.70232 -24.32766 -24.19365 -22.47279 -21.57245 -20.77011 -19.42078 -18.81513 -18.04892 -17.43574 -17.13051 -16.87068 -16.30289 -16.00241 -15.84220 -15.25790 -15.14617 -14.83168 -14.72109 -14.37499 -14.19153 -14.16687 -13.91097 -13.72834 -13.28593 -13.12547 -13.11651 -12.95962 -12.90084 -12.71489 -12.13328 -12.09721 -11.95654 -11.68526 -11.63030 -11.59987 -11.29874 -10.94551 -10.93281 -10.05881 -9.73527 -9.00114 -8.41756 -6.48908 0.37199 0.45651 1.31534 1.34209 1.46346 1.52160 1.63098 2.26621 2.75084 2.77370 2.93589 3.63268 3.79119 3.86460 3.93132 4.04319 4.08725 4.16839 4.30364 4.38132 4.39364 4.55709 4.62149 4.73625 4.81310 4.84704 4.87791 4.97906 4.98575 5.04603 5.06205 5.15501 5.21893 5.27061 5.36428 5.39015 5.42789 5.45897 5.49828 5.78199 5.85791 6.05061 6.39006 6.51168 6.72068 7.11324 7.28057 8.72645 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036928 B = 0.002486 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.057991 B =11259.717206 C =11817.408864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.051 4.051 3 C -0.171 4.171 4 C 0.106 3.894 5 O -0.322 6.322 6 C 0.052 3.948 7 C 0.501 3.499 8 O -0.585 6.585 9 N -0.696 5.696 10 C 0.232 3.768 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.028 3.972 14 N -0.929 5.929 15 Si 0.935 3.065 16 H -0.265 1.265 17 H -0.272 1.272 18 H -0.262 1.262 19 C -0.217 4.217 20 C -0.074 4.074 21 C -0.118 4.118 22 C -0.055 4.055 23 C -0.143 4.143 24 C -0.143 4.143 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.414 0.586 32 H 0.014 0.986 33 H 0.013 0.987 34 H 0.273 0.727 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.709 -22.163 0.134 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.189 4.189 4 C 0.062 3.938 5 O -0.235 6.235 6 C -0.026 4.026 7 C 0.288 3.712 8 O -0.466 6.466 9 N -0.347 5.347 10 C 0.108 3.892 11 C -0.584 4.584 12 H 0.082 0.918 13 C -0.173 4.173 14 N -0.567 5.567 15 Si 0.759 3.241 16 H -0.190 1.190 17 H -0.197 1.197 18 H -0.186 1.186 19 C -0.235 4.235 20 C -0.091 4.091 21 C -0.119 4.119 22 C -0.073 4.073 23 C -0.200 4.200 24 C -0.201 4.201 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.251 0.749 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.082 0.918 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.113 -21.173 0.128 30.615 hybrid contribution 0.794 0.923 0.013 1.217 sum -21.319 -20.250 0.141 29.404 Atomic orbital electron populations 1.20908 0.89146 1.03695 1.03449 1.19826 0.97258 0.91143 0.96905 1.20466 0.90980 0.99278 1.08216 1.19298 0.92232 0.84565 0.97745 1.86108 1.19026 1.29300 1.89079 1.22526 0.79685 0.93884 1.06474 1.20783 0.82626 0.91430 0.76399 1.90674 1.60278 1.44106 1.51522 1.45834 1.05554 1.10547 1.72811 1.19156 0.92826 0.81291 0.95922 1.21252 0.89478 0.94924 1.52757 0.91774 1.25566 0.95264 1.02844 0.93610 1.69971 1.05840 1.30392 1.50518 0.85897 0.79139 0.79646 0.79458 1.18999 1.19742 1.18638 1.21483 1.01322 0.91682 1.09057 1.21029 0.93820 0.97659 0.96626 1.19920 0.93780 0.94934 1.03218 1.20183 0.99843 0.90908 0.96411 1.21847 1.02116 1.00138 0.95883 1.21860 1.01683 0.99486 0.97027 0.89904 0.91287 0.89474 0.85986 0.86039 0.86068 0.74938 0.96782 0.96884 0.91788 0.83600 0.83721 0.89218 0.92583 0.93206 0.91138 0.92381 0.93227 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.13 71.23 0.65 -0.87 16 2 C -0.05 -0.99 5.88 -19.88 -0.12 -1.10 16 3 C -0.17 -4.23 9.62 22.37 0.22 -4.02 16 4 C 0.11 2.82 6.69 22.51 0.15 2.97 16 5 O -0.32 -10.32 9.67 -73.40 -0.71 -11.03 16 6 C 0.05 1.40 5.22 71.24 0.37 1.77 16 7 C 0.50 19.14 7.91 87.66 0.69 19.83 16 8 O -0.59 -28.33 16.50 16.02 0.26 -28.06 16 9 N -0.70 -27.17 5.55 -466.80 -2.59 -29.76 16 10 C 0.23 11.30 4.50 85.63 0.38 11.69 16 11 C -0.55 -29.71 9.83 25.60 0.25 -29.46 16 12 H 0.06 3.62 7.84 -2.91 -0.02 3.59 16 13 C 0.03 1.56 5.47 84.66 0.46 2.02 16 14 N -0.93 -54.93 13.96 21.45 0.30 -54.63 16 15 Si 0.93 44.01 27.47 68.60 1.88 45.89 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.26 -12.32 6.54 99.48 0.65 -11.67 16 19 C -0.22 -4.48 9.04 22.37 0.20 -4.28 16 20 C -0.07 -1.28 8.75 22.25 0.19 -1.08 16 21 C -0.12 -2.01 4.79 -19.85 -0.10 -2.10 16 22 C -0.06 -0.64 2.82 -11.54 -0.03 -0.67 16 23 C -0.14 -1.47 9.06 71.98 0.65 -0.81 16 24 C -0.14 -1.46 8.94 71.98 0.64 -0.82 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.90 8.05 -2.39 -0.02 0.88 16 27 H 0.09 0.87 6.54 -2.38 -0.02 0.85 16 28 H 0.12 3.08 8.06 -2.91 -0.02 3.05 16 29 H 0.12 2.47 7.66 -2.39 -0.02 2.45 16 30 H 0.12 2.47 7.66 -2.39 -0.02 2.45 16 31 H 0.41 13.40 8.32 -92.70 -0.77 12.63 16 32 H 0.01 0.73 7.20 -2.39 -0.02 0.72 16 33 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 36 H 0.15 1.82 7.10 -2.91 -0.02 1.80 16 37 H 0.09 0.89 5.72 -2.39 -0.01 0.88 16 38 H 0.06 0.58 7.74 -2.39 -0.02 0.57 16 39 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.58 7.08 -2.39 -0.02 0.56 16 42 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 43 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -72.38 353.39 3.96 -68.42 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.18 Total: 16.11 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 4.63 Total: -6.93 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.29 Total: -84.40 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.45 Total: -39.09 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -72.38 3.96 -68.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343898184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.832 kcal (2) G-P(sol) polarization free energy of solvation -72.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds