Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38232 * 119.99993 * 2 1 4 4 C 1.38236 * 120.00084 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99935 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99965 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47061 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.46458 * 239.99882 * 6 5 4 9 9 C 1.52996 * 109.47339 * 119.99871 * 6 5 4 10 10 H 1.09001 * 109.47210 * 304.99422 * 9 6 5 11 11 O 1.42897 * 109.47120 * 64.99617 * 9 6 5 12 12 C 1.50700 * 109.46940 * 184.99869 * 9 6 5 13 13 O 1.21283 * 119.99722 * 244.99533 * 12 9 6 14 14 N 1.34771 * 120.00216 * 64.99911 * 12 9 6 15 15 C 1.46506 * 120.00084 * 0.02562 * 14 12 9 16 16 C 1.46496 * 120.00157 * 179.97438 * 14 12 9 17 17 C 1.50695 * 109.47390 * 270.00017 * 16 14 12 18 18 H 1.08001 * 120.00425 * 0.02562 * 17 16 14 19 19 C 1.37885 * 119.99997 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99438 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46633 * 89.99782 * 21 19 17 23 23 H 1.48493 * 109.46760 * 209.99955 * 21 19 17 24 24 H 1.48500 * 109.46782 * 329.99966 * 21 19 17 25 25 C 1.38237 * 119.99717 * 0.26991 * 5 4 3 26 26 C 1.38229 * 119.99981 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.46885 * 89.99814 * 1 2 3 28 28 H 1.08998 * 109.46911 * 210.00165 * 1 2 3 29 29 H 1.08998 * 109.46943 * 329.99889 * 1 2 3 30 30 H 1.08000 * 120.00081 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.99930 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47261 * 299.99225 * 8 6 5 33 33 H 1.08993 * 109.47425 * 60.00145 * 8 6 5 34 34 H 1.09005 * 109.46707 * 179.97438 * 8 6 5 35 35 H 0.96698 * 114.00002 * 60.00419 * 11 9 6 36 36 H 1.09001 * 109.47060 * 270.00360 * 15 14 12 37 37 H 1.09004 * 109.47073 * 29.99849 * 15 14 12 38 38 H 1.09000 * 109.47212 * 149.99932 * 15 14 12 39 39 H 1.09001 * 109.47057 * 30.00532 * 16 14 12 40 40 H 1.08999 * 109.47333 * 150.00092 * 16 14 12 41 41 H 0.97003 * 119.99670 * 179.97438 * 20 19 17 42 42 H 1.08006 * 119.99369 * 179.72508 * 25 5 4 43 43 H 1.08001 * 120.00436 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7788 0.0000 0.0028 7 1 6.1421 1.0277 0.0021 8 6 6.2896 -0.7219 -1.2458 9 6 6.2878 -0.7206 1.2527 10 1 5.8526 -0.2606 2.1399 11 8 5.9098 -2.0975 1.1959 12 6 7.7897 -0.6142 1.3172 13 8 8.4729 -1.6119 1.2235 14 7 8.3737 0.5896 1.4791 15 6 7.5484 1.7947 1.5929 16 6 9.8336 0.6930 1.5423 17 6 10.2849 0.5627 2.9742 18 1 9.5571 0.4171 3.7587 19 6 11.6272 0.6285 3.2827 20 7 12.0209 0.5153 4.5324 21 14 12.8862 0.8797 1.9257 22 1 13.1151 2.3333 1.7259 23 1 14.1632 0.2254 2.3082 24 1 12.3810 0.2801 0.6646 25 6 3.5805 -1.1971 -0.0035 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1206 2.1325 0.0010 32 1 5.9263 -1.7495 -1.2455 33 1 5.9269 -0.2085 -2.1362 34 1 7.3796 -0.7215 -1.2452 35 1 6.2626 -2.5709 0.4301 36 1 7.3786 2.2138 0.6011 37 1 6.5915 1.5382 2.0476 38 1 8.0610 2.5287 2.2146 39 1 10.2804 -0.1031 0.9466 40 1 10.1468 1.6602 1.1492 41 1 12.9652 0.5612 4.7494 42 1 4.1206 -2.1324 -0.0071 43 1 1.6583 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344194084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = -64.708389 kcal Electronic energy + Delta-G solvation = -23656.773411 eV Core-core repulsion = 20280.811484 eV Total energy + Delta-G solvation = -3375.961927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40052 -39.09632 -36.77334 -35.19562 -33.97960 -32.58435 -31.35215 -30.96302 -28.97434 -27.03038 -26.83308 -25.82648 -22.96766 -22.74866 -21.79565 -20.28755 -18.97952 -17.25149 -16.95856 -16.37841 -16.13829 -15.98121 -15.28296 -14.90320 -14.66497 -14.44748 -14.01151 -13.71102 -13.62884 -13.35919 -13.18294 -12.64812 -12.50224 -12.39661 -12.33535 -12.20003 -12.11391 -11.90030 -11.66506 -11.53088 -11.36333 -11.08333 -10.91893 -10.85644 -10.56369 -10.26317 -10.12538 -9.56175 -8.96609 -8.92150 -8.61391 -8.48146 -7.78218 -6.10426 -4.09631 1.24820 1.37303 3.18327 3.24881 3.33256 3.36962 3.63510 3.77720 4.33366 4.37651 4.59307 4.65455 4.79627 4.84579 4.93977 5.00169 5.10440 5.18389 5.23928 5.27201 5.36837 5.40549 5.50903 5.59604 5.63325 5.67464 5.73495 5.76772 5.85867 6.01468 6.03429 6.09523 6.14814 6.37828 6.52472 6.59934 6.61765 6.91486 6.96560 7.24959 7.57481 7.62062 8.15294 8.44010 8.84103 8.93897 9.49210 11.03014 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032661 B = 0.003526 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.088963 B = 7939.102483 C = 8121.110151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.124 4.124 4 C -0.112 4.112 5 C -0.078 4.078 6 C -0.087 4.087 7 H 0.099 0.901 8 C -0.150 4.150 9 C 0.101 3.899 10 H 0.119 0.881 11 O -0.535 6.535 12 C 0.482 3.518 13 O -0.532 6.532 14 N -0.593 5.593 15 C 0.077 3.923 16 C 0.215 3.785 17 C -0.531 4.531 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.876 3.124 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.264 1.264 25 C -0.094 4.094 26 C -0.124 4.124 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.377 0.623 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.132 0.868 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.829 2.252 -12.564 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.142 4.142 4 C -0.130 4.130 5 C -0.078 4.078 6 C -0.106 4.106 7 H 0.117 0.883 8 C -0.207 4.207 9 C 0.038 3.962 10 H 0.137 0.863 11 O -0.340 6.340 12 C 0.268 3.732 13 O -0.409 6.409 14 N -0.326 5.326 15 C -0.066 4.066 16 C 0.094 3.906 17 C -0.569 4.569 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.189 1.189 25 C -0.112 4.112 26 C -0.142 4.142 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.226 0.774 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.150 0.850 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.596 1.867 -11.949 23.884 hybrid contribution 1.086 0.215 -0.859 1.401 sum -19.510 2.082 -12.807 23.431 Atomic orbital electron populations 1.20774 0.91543 1.02619 1.02053 1.19908 0.95870 0.93378 1.00225 1.20948 0.94099 0.97361 1.01829 1.21057 0.94152 0.97471 1.00367 1.19675 0.94343 0.93368 1.00413 1.20948 0.91962 1.02117 0.95574 0.88307 1.21861 1.01691 1.00502 0.96673 1.21862 0.91646 0.83831 0.98819 0.86312 1.86570 1.74713 1.20909 1.51830 1.21129 0.90474 0.83854 0.77749 1.90685 1.64716 1.35493 1.50020 1.47861 1.08742 1.05696 1.70287 1.21832 0.95369 0.88842 1.00592 1.19685 0.75349 0.96978 0.98572 1.21327 0.93443 1.50475 0.91656 0.90761 1.24871 0.98225 0.94523 0.95418 1.69899 1.16093 1.50038 1.17449 0.86850 0.81411 0.78564 0.82940 1.20074 1.20904 1.18870 1.21242 0.93791 0.98424 0.97755 1.21040 0.94330 0.97333 1.01485 0.91436 0.91682 0.91722 0.86351 0.86095 0.92077 0.91790 0.91656 0.77370 0.93262 0.92023 0.90259 0.94112 0.95576 0.92523 0.85017 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.11 -1.15 9.67 -39.58 -0.38 -1.53 16 5 C -0.08 -0.88 4.78 -104.62 -0.50 -1.38 16 6 C -0.09 -1.03 2.21 -91.77 -0.20 -1.23 16 7 H 0.10 1.09 4.80 -51.93 -0.25 0.84 16 8 C -0.15 -1.70 8.39 37.16 0.31 -1.39 16 9 C 0.10 1.53 2.29 -27.88 -0.06 1.46 16 10 H 0.12 1.77 7.13 -51.93 -0.37 1.40 16 11 O -0.53 -8.11 10.35 -55.09 -0.57 -8.68 16 12 C 0.48 9.62 6.06 -10.99 -0.07 9.55 16 13 O -0.53 -12.93 15.90 -14.31 -0.23 -13.16 16 14 N -0.59 -11.87 2.86 -182.95 -0.52 -12.39 16 15 C 0.08 1.14 8.93 59.85 0.53 1.67 16 16 C 0.21 5.19 4.23 -5.20 -0.02 5.17 16 17 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 18 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 21 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 25 C -0.09 -1.06 8.43 -39.58 -0.33 -1.40 16 26 C -0.12 -1.28 9.70 -39.59 -0.38 -1.66 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.12 1.03 7.95 -52.48 -0.42 0.61 16 32 H 0.06 0.63 5.95 -51.93 -0.31 0.32 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.86 7.38 -51.93 -0.38 0.48 16 35 H 0.38 4.98 6.88 45.56 0.31 5.29 16 36 H 0.05 0.58 6.95 -51.93 -0.36 0.22 16 37 H 0.06 0.77 6.11 -51.93 -0.32 0.45 16 38 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.04 1.06 6.48 -51.93 -0.34 0.73 16 40 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.13 1.45 5.74 -52.48 -0.30 1.15 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -34.78 342.87 -7.90 -42.68 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.66 Total: 4.50 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.19 Total: -7.91 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.25 Total: -39.41 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.80 Total: -21.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.78 -7.90 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344194084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.028 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds