Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38232 * 119.99993 * 2 1 4 4 C 1.38236 * 120.00084 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99935 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99965 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47061 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.46458 * 239.99882 * 6 5 4 9 9 C 1.52996 * 109.47339 * 119.99871 * 6 5 4 10 10 H 1.09001 * 109.47210 * 304.99422 * 9 6 5 11 11 O 1.42897 * 109.47120 * 64.99617 * 9 6 5 12 12 C 1.50700 * 109.46940 * 184.99869 * 9 6 5 13 13 O 1.21283 * 119.99722 * 244.99533 * 12 9 6 14 14 N 1.34771 * 120.00216 * 64.99911 * 12 9 6 15 15 C 1.46506 * 120.00084 * 0.02562 * 14 12 9 16 16 C 1.46496 * 120.00157 * 179.97438 * 14 12 9 17 17 C 1.50695 * 109.47390 * 270.00017 * 16 14 12 18 18 H 1.08001 * 120.00425 * 0.02562 * 17 16 14 19 19 C 1.37885 * 119.99997 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99438 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46633 * 89.99782 * 21 19 17 23 23 H 1.48493 * 109.46760 * 209.99955 * 21 19 17 24 24 H 1.48500 * 109.46782 * 329.99966 * 21 19 17 25 25 C 1.38237 * 119.99717 * 0.26991 * 5 4 3 26 26 C 1.38229 * 119.99981 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.46885 * 89.99814 * 1 2 3 28 28 H 1.08998 * 109.46911 * 210.00165 * 1 2 3 29 29 H 1.08998 * 109.46943 * 329.99889 * 1 2 3 30 30 H 1.08000 * 120.00081 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.99930 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47261 * 299.99225 * 8 6 5 33 33 H 1.08993 * 109.47425 * 60.00145 * 8 6 5 34 34 H 1.09005 * 109.46707 * 179.97438 * 8 6 5 35 35 H 0.96698 * 114.00002 * 60.00419 * 11 9 6 36 36 H 1.09001 * 109.47060 * 270.00360 * 15 14 12 37 37 H 1.09004 * 109.47073 * 29.99849 * 15 14 12 38 38 H 1.09000 * 109.47212 * 149.99932 * 15 14 12 39 39 H 1.09001 * 109.47057 * 30.00532 * 16 14 12 40 40 H 1.08999 * 109.47333 * 150.00092 * 16 14 12 41 41 H 0.97003 * 119.99670 * 179.97438 * 20 19 17 42 42 H 1.08006 * 119.99369 * 179.72508 * 25 5 4 43 43 H 1.08001 * 120.00436 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7788 0.0000 0.0028 7 1 6.1421 1.0277 0.0021 8 6 6.2896 -0.7219 -1.2458 9 6 6.2878 -0.7206 1.2527 10 1 5.8526 -0.2606 2.1399 11 8 5.9098 -2.0975 1.1959 12 6 7.7897 -0.6142 1.3172 13 8 8.4729 -1.6119 1.2235 14 7 8.3737 0.5896 1.4791 15 6 7.5484 1.7947 1.5929 16 6 9.8336 0.6930 1.5423 17 6 10.2849 0.5627 2.9742 18 1 9.5571 0.4171 3.7587 19 6 11.6272 0.6285 3.2827 20 7 12.0209 0.5153 4.5324 21 14 12.8862 0.8797 1.9257 22 1 13.1151 2.3333 1.7259 23 1 14.1632 0.2254 2.3082 24 1 12.3810 0.2801 0.6646 25 6 3.5805 -1.1971 -0.0035 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1206 2.1325 0.0010 32 1 5.9263 -1.7495 -1.2455 33 1 5.9269 -0.2085 -2.1362 34 1 7.3796 -0.7215 -1.2452 35 1 6.2626 -2.5709 0.4301 36 1 7.3786 2.2138 0.6011 37 1 6.5915 1.5382 2.0476 38 1 8.0610 2.5287 2.2146 39 1 10.2804 -0.1031 0.9466 40 1 10.1468 1.6602 1.1492 41 1 12.9652 0.5612 4.7494 42 1 4.1206 -2.1324 -0.0071 43 1 1.6583 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344194084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = -87.482598 kcal Electronic energy + Delta-G solvation = -23657.760975 eV Core-core repulsion = 20280.811484 eV Total energy + Delta-G solvation = -3376.949491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60929 -40.14986 -38.01710 -36.78355 -35.10465 -34.61676 -32.25328 -31.71589 -30.71279 -28.30933 -27.67790 -27.21754 -24.50019 -23.60878 -22.97098 -21.16319 -20.46310 -19.16688 -18.57420 -17.76399 -17.17402 -17.05252 -16.49375 -16.23862 -15.95221 -15.60552 -15.22099 -14.97287 -14.53411 -14.44563 -14.23521 -14.14666 -13.91612 -13.70463 -13.43708 -13.31038 -13.16629 -12.99731 -12.91269 -12.68925 -12.63038 -12.41705 -12.26001 -12.01339 -11.87641 -11.77890 -11.74762 -11.34484 -10.83730 -10.40091 -9.70462 -9.46003 -9.28866 -8.35610 -6.41486 0.48104 0.62084 1.31243 1.36212 1.46775 1.65353 2.22180 2.30359 2.91103 2.98517 3.19623 3.54530 3.66591 3.88429 3.99815 4.08380 4.17534 4.27793 4.30278 4.38863 4.50971 4.59444 4.64124 4.71591 4.75431 4.82011 4.87445 4.88850 4.94062 4.96839 5.03399 5.05667 5.19876 5.31522 5.37053 5.43971 5.55100 5.62536 5.80685 5.82616 6.20271 6.23065 6.42871 6.60352 6.65741 7.17557 7.32007 8.81659 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032661 B = 0.003526 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.088963 B = 7939.102483 C = 8121.110151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.131 4.131 4 C -0.116 4.116 5 C -0.090 4.090 6 C -0.073 4.073 7 H 0.112 0.888 8 C -0.148 4.148 9 C 0.114 3.886 10 H 0.124 0.876 11 O -0.543 6.543 12 C 0.474 3.526 13 O -0.587 6.587 14 N -0.599 5.599 15 C 0.069 3.931 16 C 0.222 3.778 17 C -0.540 4.540 18 H 0.025 0.975 19 C 0.009 3.991 20 N -0.947 5.947 21 Si 0.951 3.049 22 H -0.249 1.249 23 H -0.283 1.283 24 H -0.254 1.254 25 C -0.108 4.108 26 C -0.137 4.137 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.384 0.616 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.021 0.979 40 H 0.054 0.946 41 H 0.269 0.731 42 H 0.127 0.873 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.401 4.070 -14.759 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.090 4.090 6 C -0.092 4.092 7 H 0.130 0.870 8 C -0.205 4.205 9 C 0.052 3.948 10 H 0.141 0.859 11 O -0.349 6.349 12 C 0.262 3.738 13 O -0.468 6.468 14 N -0.331 5.331 15 C -0.073 4.073 16 C 0.100 3.900 17 C -0.578 4.578 18 H 0.043 0.957 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.773 3.227 22 H -0.173 1.173 23 H -0.209 1.209 24 H -0.178 1.178 25 C -0.126 4.126 26 C -0.155 4.155 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.235 0.765 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.144 0.856 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.221 3.723 -14.152 26.606 hybrid contribution 1.448 -0.387 -0.092 1.502 sum -20.772 3.336 -14.244 25.407 Atomic orbital electron populations 1.20821 0.89807 1.03373 1.02917 1.20267 0.97313 0.93190 0.99110 1.21267 0.94146 0.98261 1.01241 1.21314 0.94637 0.97763 0.99629 1.19596 0.93589 0.93914 1.01883 1.20823 0.92592 1.02089 0.93652 0.87029 1.21846 1.00170 1.01217 0.97281 1.21843 0.87714 0.84349 1.00925 0.85901 1.86547 1.74457 1.21326 1.52598 1.22103 0.92502 0.82966 0.76235 1.90643 1.66430 1.37270 1.52446 1.47953 1.07677 1.07669 1.69821 1.22178 0.95286 0.86661 1.03149 1.19363 0.78223 0.97353 0.95049 1.21578 0.92948 1.50278 0.93043 0.95651 1.25913 1.00759 0.93996 0.98227 1.70063 1.16884 1.51590 1.20122 0.85661 0.77706 0.79948 0.79337 1.17261 1.20879 1.17792 1.21323 0.94421 0.98438 0.98441 1.21256 0.94175 0.98355 1.01721 0.90422 0.91250 0.90711 0.84278 0.84164 0.91574 0.90025 0.93848 0.76526 0.89198 0.89760 0.91039 0.96108 0.92851 0.92233 0.85559 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16 2 C -0.10 -1.67 5.88 -19.87 -0.12 -1.79 16 3 C -0.13 -2.13 9.70 22.27 0.22 -1.92 16 4 C -0.12 -2.00 9.67 22.27 0.22 -1.79 16 5 C -0.09 -1.82 4.78 -19.86 -0.09 -1.91 16 6 C -0.07 -1.58 2.21 -11.54 -0.03 -1.60 16 7 H 0.11 2.10 4.80 -2.38 -0.01 2.09 16 8 C -0.15 -3.14 8.39 71.98 0.60 -2.54 16 9 C 0.11 3.37 2.29 29.85 0.07 3.44 16 10 H 0.12 3.52 7.13 -2.39 -0.02 3.51 16 11 O -0.54 -16.49 10.35 -129.99 -1.35 -17.84 16 12 C 0.47 19.09 6.06 87.66 0.53 19.62 16 13 O -0.59 -29.54 15.90 15.95 0.25 -29.28 16 14 N -0.60 -23.76 2.86 -851.13 -2.43 -26.19 16 15 C 0.07 1.87 8.93 127.77 1.14 3.01 16 16 C 0.22 10.74 4.23 85.63 0.36 11.10 16 17 C -0.54 -32.06 9.94 25.60 0.25 -31.81 16 18 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 19 C 0.01 0.53 5.47 84.66 0.46 0.99 16 20 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 21 Si 0.95 44.30 27.47 68.60 1.88 46.19 16 22 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 25 C -0.11 -2.29 8.43 22.27 0.19 -2.11 16 26 C -0.14 -2.61 9.70 22.27 0.22 -2.39 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.73 8.09 -2.39 -0.02 0.72 16 29 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 30 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.14 1.81 7.95 -2.91 -0.02 1.79 16 32 H 0.07 1.31 5.95 -2.39 -0.01 1.30 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.11 7.38 -2.38 -0.02 1.10 16 35 H 0.38 10.33 6.88 -74.06 -0.51 9.82 16 36 H 0.09 1.75 6.95 -2.39 -0.02 1.73 16 37 H 0.08 1.90 6.11 -2.38 -0.01 1.89 16 38 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 39 H 0.02 1.09 6.48 -2.39 -0.02 1.08 16 40 H 0.05 2.29 7.50 -2.39 -0.02 2.27 16 41 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.13 2.72 5.74 -2.91 -0.02 2.70 16 43 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -78.95 342.87 3.85 -75.11 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.45 Total: 22.43 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 4.74 Total: -10.27 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -2.13 Total: -86.34 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -1.09 Total: -47.12 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -78.95 3.85 -75.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344194084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.377 kcal (2) G-P(sol) polarization free energy of solvation -78.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds