Wall clock time and date at job start Tue Mar 31 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99592 * 2 1 4 4 C 1.38237 * 119.99750 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00045 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99879 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47048 * 0.02562 * 6 5 4 8 8 C 1.53007 * 109.46861 * 120.00165 * 6 5 4 9 9 C 1.52999 * 109.47267 * 239.99759 * 6 5 4 10 10 H 1.09006 * 109.47263 * 298.99787 * 9 6 5 11 11 O 1.42901 * 109.47102 * 58.99248 * 9 6 5 12 12 C 1.50703 * 109.47282 * 178.99497 * 9 6 5 13 13 O 1.21277 * 119.99492 * 277.32655 * 12 9 6 14 14 N 1.34776 * 119.99882 * 97.32620 * 12 9 6 15 15 C 1.46498 * 119.99940 * 355.49283 * 14 12 9 16 16 C 1.46498 * 119.99808 * 175.48914 * 14 12 9 17 17 C 1.50703 * 109.46575 * 90.00007 * 16 14 12 18 18 H 1.07998 * 120.00298 * 0.02562 * 17 16 14 19 19 C 1.37881 * 119.99483 * 179.97438 * 17 16 14 20 20 N 1.31507 * 120.00389 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99512 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46873 * 120.00559 * 21 19 17 24 24 H 1.48504 * 109.47131 * 240.00065 * 21 19 17 25 25 C 1.38231 * 119.99952 * 0.24854 * 5 4 3 26 26 C 1.38227 * 120.00217 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46808 * 90.00126 * 1 2 3 28 28 H 1.09003 * 109.46770 * 209.99291 * 1 2 3 29 29 H 1.08994 * 109.47549 * 329.99796 * 1 2 3 30 30 H 1.08003 * 119.99998 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.99958 * 179.97438 * 4 3 2 32 32 H 1.08993 * 109.47363 * 53.80035 * 8 6 5 33 33 H 1.08994 * 109.46896 * 173.80303 * 8 6 5 34 34 H 1.09002 * 109.46819 * 293.79582 * 8 6 5 35 35 H 0.96698 * 113.99683 * 59.99684 * 11 9 6 36 36 H 1.09006 * 109.47036 * 94.79298 * 15 14 12 37 37 H 1.09003 * 109.46990 * 214.79040 * 15 14 12 38 38 H 1.09001 * 109.47585 * 334.79682 * 15 14 12 39 39 H 1.09000 * 109.47410 * 209.99882 * 16 14 12 40 40 H 1.09002 * 109.47144 * 330.00566 * 16 14 12 41 41 H 0.96999 * 120.00121 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.00016 * 179.73171 * 25 5 4 43 43 H 1.08004 * 120.00433 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0002 0.0005 6 6 5.7787 0.0003 0.0005 7 1 6.1420 1.0279 0.0010 8 6 6.2887 -0.7210 1.2498 9 6 6.2888 -0.7210 -1.2487 10 1 5.9403 -1.7538 -1.2397 11 8 5.7932 -0.0613 -2.4154 12 6 7.7956 -0.6994 -1.2612 13 8 8.3845 0.2760 -1.6767 14 7 8.4886 -1.7639 -0.8106 15 6 7.7806 -2.9012 -0.2177 16 6 9.9498 -1.7837 -0.9138 17 6 10.5495 -1.1840 0.3319 18 1 9.9065 -0.8244 1.1217 19 6 11.9191 -1.0952 0.4638 20 7 12.7021 -1.5335 -0.4976 21 14 12.6624 -0.3525 2.0083 22 1 11.5752 0.0611 2.9314 23 1 13.5228 -1.3608 2.6777 24 1 13.4802 0.8322 1.6436 25 6 3.5806 -1.1970 -0.0052 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3634 0.8899 0.5138 30 1 1.6580 2.1325 -0.0004 31 1 4.1205 2.1326 0.0001 32 1 5.8377 -1.7116 1.3070 33 1 7.3730 -0.8181 1.1961 34 1 6.0188 -0.1471 2.1363 35 1 6.0646 0.8639 -2.4892 36 1 7.6089 -3.6602 -0.9809 37 1 8.3823 -3.3244 0.5867 38 1 6.8239 -2.5652 0.1823 39 1 10.2925 -2.8127 -1.0229 40 1 10.2606 -1.2032 -1.7824 41 1 13.6656 -1.4714 -0.4046 42 1 4.1206 -2.1323 -0.0096 43 1 1.6583 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344194090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:00 Heat of formation + Delta-G solvation = -68.165635 kcal Electronic energy + Delta-G solvation = -23674.148358 eV Core-core repulsion = 20298.036514 eV Total energy + Delta-G solvation = -3376.111844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27575 -39.05740 -36.50009 -35.14587 -34.20681 -32.66363 -31.46940 -30.93650 -28.23358 -26.90419 -26.66527 -25.34758 -23.33853 -22.87001 -21.92678 -20.27502 -18.91966 -17.22985 -16.71080 -16.41597 -16.01389 -15.52002 -15.30876 -14.81123 -14.61735 -14.18312 -13.94415 -13.88740 -13.46326 -13.32560 -13.14656 -12.69863 -12.59786 -12.34999 -12.24884 -12.03933 -11.96513 -11.77887 -11.55127 -11.30228 -11.15433 -10.93898 -10.92807 -10.78605 -10.63992 -10.20445 -10.14697 -9.63986 -8.95506 -8.83403 -8.46905 -8.43979 -7.69664 -6.06819 -4.11648 1.28743 1.37440 3.20850 3.27761 3.35657 3.39258 3.70487 3.85826 4.41091 4.48447 4.64327 4.72265 4.83117 4.91816 4.95453 5.07142 5.18362 5.23415 5.28383 5.39222 5.40301 5.41233 5.52125 5.59675 5.63852 5.68496 5.87337 5.89951 5.98451 6.03991 6.09105 6.18435 6.31287 6.41278 6.52225 6.63145 6.97150 6.99444 7.39562 7.47948 7.70434 7.89012 8.19764 8.33111 8.84364 8.99495 9.53345 11.01427 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.003635 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.552105 B = 7700.302355 C = 7908.559804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.110 4.110 5 C -0.061 4.061 6 C -0.077 4.077 7 H 0.088 0.912 8 C -0.156 4.156 9 C 0.098 3.902 10 H 0.113 0.887 11 O -0.542 6.542 12 C 0.481 3.519 13 O -0.538 6.538 14 N -0.595 5.595 15 C 0.067 3.933 16 C 0.244 3.756 17 C -0.524 4.524 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.108 4.108 26 C -0.118 4.118 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.381 0.619 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.042 0.958 41 H 0.263 0.737 42 H 0.120 0.880 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.071 -0.012 2.606 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.137 4.137 4 C -0.128 4.128 5 C -0.062 4.062 6 C -0.096 4.096 7 H 0.106 0.894 8 C -0.213 4.213 9 C 0.035 3.965 10 H 0.130 0.870 11 O -0.347 6.347 12 C 0.267 3.733 13 O -0.416 6.416 14 N -0.328 5.328 15 C -0.077 4.077 16 C 0.124 3.876 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.126 4.126 26 C -0.136 4.136 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.230 0.770 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.138 0.862 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.814 -0.115 2.219 21.927 hybrid contribution 0.877 0.817 0.982 1.550 sum -20.937 0.703 3.201 21.192 Atomic orbital electron populations 1.20765 0.91504 1.02487 1.02147 1.19869 0.95855 0.93316 1.00631 1.20965 0.94085 0.97377 1.01280 1.21038 0.94096 0.97542 1.00125 1.19639 0.94384 0.93334 0.98798 1.20770 0.91539 1.01826 0.95471 0.89368 1.22113 1.02983 0.99998 0.96207 1.22049 0.90880 0.97950 0.85599 0.86984 1.86539 1.75255 1.29977 1.42891 1.21090 0.89724 0.83625 0.78896 1.90672 1.70927 1.32481 1.47483 1.48188 1.09788 1.16641 1.58172 1.22002 0.97535 0.89513 0.98668 1.19322 0.72182 0.97750 0.98298 1.21436 0.91526 1.40425 1.02901 0.92361 1.24942 0.97028 0.95430 0.96751 1.69939 1.04192 1.46774 1.32442 0.86452 0.79155 0.78948 0.82925 1.19779 1.20962 1.20877 1.20937 0.94038 0.97618 0.99980 1.20960 0.94069 0.97391 1.01203 0.91360 0.91741 0.91782 0.86355 0.86165 0.91850 0.90196 0.91967 0.76993 0.93552 0.90524 0.91407 0.94879 0.93966 0.92744 0.86205 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.10 -0.97 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.11 -1.27 9.67 -39.58 -0.38 -1.65 16 5 C -0.06 -0.76 4.40 -104.63 -0.46 -1.22 16 6 C -0.08 -1.05 2.32 -91.77 -0.21 -1.26 16 7 H 0.09 1.27 7.88 -51.93 -0.41 0.87 16 8 C -0.16 -2.07 7.62 37.16 0.28 -1.79 16 9 C 0.10 1.53 2.35 -27.88 -0.07 1.46 16 10 H 0.11 1.57 5.61 -51.93 -0.29 1.28 16 11 O -0.54 -8.63 12.86 -51.63 -0.66 -9.30 16 12 C 0.48 9.91 5.83 -10.98 -0.06 9.84 16 13 O -0.54 -13.39 16.17 -10.84 -0.18 -13.56 16 14 N -0.60 -12.40 2.47 -182.95 -0.45 -12.86 16 15 C 0.07 1.03 9.02 59.85 0.54 1.57 16 16 C 0.24 6.33 5.15 -5.19 -0.03 6.31 16 17 C -0.52 -14.64 9.39 -34.44 -0.32 -14.96 16 18 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 21 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C -0.11 -1.22 8.65 -39.58 -0.34 -1.57 16 26 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.12 1.25 7.95 -52.48 -0.42 0.83 16 32 H 0.06 0.71 5.79 -51.93 -0.30 0.41 16 33 H 0.08 1.31 5.96 -51.93 -0.31 1.00 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.38 5.47 8.66 45.56 0.39 5.86 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 38 H 0.07 0.85 3.21 -51.93 -0.17 0.68 16 39 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 40 H 0.04 1.25 7.49 -51.93 -0.39 0.86 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.12 1.20 7.08 -52.48 -0.37 0.83 16 43 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -33.48 349.44 -8.09 -41.56 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.60 Total: 4.93 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.18 Total: -6.93 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.28 Total: -38.64 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.84 Total: -22.86 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.48 -8.09 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344194090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.604 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds