Wall clock time and date at job start Tue Mar 31 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99592 * 2 1 4 4 C 1.38237 * 119.99750 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00045 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99879 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47048 * 0.02562 * 6 5 4 8 8 C 1.53007 * 109.46861 * 120.00165 * 6 5 4 9 9 C 1.52999 * 109.47267 * 239.99759 * 6 5 4 10 10 H 1.09006 * 109.47263 * 298.99787 * 9 6 5 11 11 O 1.42901 * 109.47102 * 58.99248 * 9 6 5 12 12 C 1.50703 * 109.47282 * 178.99497 * 9 6 5 13 13 O 1.21277 * 119.99492 * 277.32655 * 12 9 6 14 14 N 1.34776 * 119.99882 * 97.32620 * 12 9 6 15 15 C 1.46498 * 119.99940 * 355.49283 * 14 12 9 16 16 C 1.46498 * 119.99808 * 175.48914 * 14 12 9 17 17 C 1.50703 * 109.46575 * 90.00007 * 16 14 12 18 18 H 1.07998 * 120.00298 * 0.02562 * 17 16 14 19 19 C 1.37881 * 119.99483 * 179.97438 * 17 16 14 20 20 N 1.31507 * 120.00389 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99512 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46873 * 120.00559 * 21 19 17 24 24 H 1.48504 * 109.47131 * 240.00065 * 21 19 17 25 25 C 1.38231 * 119.99952 * 0.24854 * 5 4 3 26 26 C 1.38227 * 120.00217 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46808 * 90.00126 * 1 2 3 28 28 H 1.09003 * 109.46770 * 209.99291 * 1 2 3 29 29 H 1.08994 * 109.47549 * 329.99796 * 1 2 3 30 30 H 1.08003 * 119.99998 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.99958 * 179.97438 * 4 3 2 32 32 H 1.08993 * 109.47363 * 53.80035 * 8 6 5 33 33 H 1.08994 * 109.46896 * 173.80303 * 8 6 5 34 34 H 1.09002 * 109.46819 * 293.79582 * 8 6 5 35 35 H 0.96698 * 113.99683 * 59.99684 * 11 9 6 36 36 H 1.09006 * 109.47036 * 94.79298 * 15 14 12 37 37 H 1.09003 * 109.46990 * 214.79040 * 15 14 12 38 38 H 1.09001 * 109.47585 * 334.79682 * 15 14 12 39 39 H 1.09000 * 109.47410 * 209.99882 * 16 14 12 40 40 H 1.09002 * 109.47144 * 330.00566 * 16 14 12 41 41 H 0.96999 * 120.00121 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.00016 * 179.73171 * 25 5 4 43 43 H 1.08004 * 120.00433 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0002 0.0005 6 6 5.7787 0.0003 0.0005 7 1 6.1420 1.0279 0.0010 8 6 6.2887 -0.7210 1.2498 9 6 6.2888 -0.7210 -1.2487 10 1 5.9403 -1.7538 -1.2397 11 8 5.7932 -0.0613 -2.4154 12 6 7.7956 -0.6994 -1.2612 13 8 8.3845 0.2760 -1.6767 14 7 8.4886 -1.7639 -0.8106 15 6 7.7806 -2.9012 -0.2177 16 6 9.9498 -1.7837 -0.9138 17 6 10.5495 -1.1840 0.3319 18 1 9.9065 -0.8244 1.1217 19 6 11.9191 -1.0952 0.4638 20 7 12.7021 -1.5335 -0.4976 21 14 12.6624 -0.3525 2.0083 22 1 11.5752 0.0611 2.9314 23 1 13.5228 -1.3608 2.6777 24 1 13.4802 0.8322 1.6436 25 6 3.5806 -1.1970 -0.0052 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3634 0.8899 0.5138 30 1 1.6580 2.1325 -0.0004 31 1 4.1205 2.1326 0.0001 32 1 5.8377 -1.7116 1.3070 33 1 7.3730 -0.8181 1.1961 34 1 6.0188 -0.1471 2.1363 35 1 6.0646 0.8639 -2.4892 36 1 7.6089 -3.6602 -0.9809 37 1 8.3823 -3.3244 0.5867 38 1 6.8239 -2.5652 0.1823 39 1 10.2925 -2.8127 -1.0229 40 1 10.2606 -1.2032 -1.7824 41 1 13.6656 -1.4714 -0.4046 42 1 4.1206 -2.1323 -0.0096 43 1 1.6583 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344194090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:59 Heat of formation + Delta-G solvation = -89.302983 kcal Electronic energy + Delta-G solvation = -23675.064943 eV Core-core repulsion = 20298.036514 eV Total energy + Delta-G solvation = -3377.028429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.56244 -40.16521 -37.83552 -36.78283 -35.41749 -34.68245 -32.40113 -31.72412 -30.06557 -28.22515 -27.54750 -26.93698 -24.91133 -23.84987 -23.08038 -21.23764 -20.42216 -18.73197 -18.64008 -17.89778 -17.17469 -16.90487 -16.44787 -16.21189 -15.71660 -15.64247 -15.30912 -14.82042 -14.52890 -14.44492 -14.21279 -14.10913 -13.94855 -13.65285 -13.48965 -13.29369 -13.14425 -12.97109 -12.87137 -12.76997 -12.61778 -12.59581 -12.24358 -12.17436 -11.83192 -11.76519 -11.68119 -11.34487 -10.66257 -10.41397 -9.74536 -9.47737 -9.30177 -8.23538 -6.37874 0.46574 0.57946 1.35618 1.37902 1.49496 1.64186 2.22756 2.40541 2.89151 3.06480 3.27070 3.51272 3.67201 3.82139 3.99275 4.09879 4.15799 4.20480 4.29644 4.35102 4.46396 4.61162 4.64760 4.66777 4.80336 4.85793 4.89253 4.95306 4.97445 5.02054 5.04790 5.18052 5.24490 5.27220 5.35395 5.53785 5.58516 5.76749 5.77632 5.79322 6.03888 6.19646 6.45122 6.65336 6.73335 7.23119 7.37903 8.84121 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.003635 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.552105 B = 7700.302355 C = 7908.559804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.128 4.128 4 C -0.124 4.124 5 C -0.075 4.075 6 C -0.067 4.067 7 H 0.072 0.928 8 C -0.153 4.153 9 C 0.115 3.885 10 H 0.137 0.863 11 O -0.546 6.546 12 C 0.473 3.527 13 O -0.593 6.593 14 N -0.599 5.599 15 C 0.060 3.940 16 C 0.257 3.743 17 C -0.537 4.537 18 H 0.056 0.944 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.283 1.283 25 C -0.117 4.117 26 C -0.125 4.125 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.387 0.613 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.026 0.974 40 H -0.005 1.005 41 H 0.267 0.733 42 H 0.134 0.866 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.693 -0.742 4.155 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.076 4.076 6 C -0.086 4.086 7 H 0.090 0.910 8 C -0.210 4.210 9 C 0.052 3.948 10 H 0.154 0.846 11 O -0.352 6.352 12 C 0.261 3.739 13 O -0.474 6.474 14 N -0.331 5.331 15 C -0.081 4.081 16 C 0.136 3.864 17 C -0.575 4.575 18 H 0.075 0.925 19 C -0.193 4.193 20 N -0.570 5.570 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.209 1.209 25 C -0.134 4.134 26 C -0.142 4.142 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.236 0.764 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.044 0.956 40 H 0.013 0.987 41 H 0.076 0.924 42 H 0.152 0.848 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.479 -0.877 3.782 24.785 hybrid contribution 1.618 1.045 0.451 1.979 sum -22.861 0.169 4.233 23.250 Atomic orbital electron populations 1.20817 0.89540 1.03572 1.02886 1.20267 0.97434 0.93071 0.99260 1.21227 0.93733 0.98573 1.01008 1.21194 0.94905 0.97567 1.00503 1.19490 0.93029 0.94253 1.00784 1.20616 0.92901 1.00640 0.94441 0.90964 1.22080 1.00830 1.01655 0.96398 1.22044 0.86583 0.99546 0.86584 0.84602 1.86515 1.74874 1.30542 1.43263 1.22113 0.91966 0.82464 0.77368 1.90633 1.72540 1.34484 1.49778 1.48181 1.08044 1.18459 1.58411 1.22308 0.98257 0.88301 0.99248 1.18804 0.75692 0.96071 0.95870 1.21697 0.92009 1.40499 1.03325 0.92529 1.25865 0.97554 0.95749 1.00087 1.70057 1.04619 1.47821 1.34488 0.85376 0.78384 0.78139 0.78971 1.18910 1.19440 1.20933 1.21162 0.94761 0.97676 0.99848 1.21277 0.93869 0.98516 1.00572 0.90672 0.90571 0.90885 0.84685 0.86028 0.89242 0.93452 0.91072 0.76384 0.91100 0.90770 0.88166 0.95611 0.98718 0.92431 0.84793 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.10 -1.73 5.88 -19.87 -0.12 -1.84 16 3 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 4 C -0.12 -2.69 9.67 22.27 0.22 -2.48 16 5 C -0.08 -1.72 4.40 -19.87 -0.09 -1.81 16 6 C -0.07 -1.76 2.32 -11.54 -0.03 -1.78 16 7 H 0.07 2.12 7.88 -2.39 -0.02 2.10 16 8 C -0.15 -3.83 7.62 71.98 0.55 -3.28 16 9 C 0.11 3.48 2.35 29.85 0.07 3.55 16 10 H 0.14 3.44 5.61 -2.38 -0.01 3.42 16 11 O -0.55 -17.11 12.86 -133.30 -1.71 -18.83 16 12 C 0.47 19.89 5.83 87.66 0.51 20.40 16 13 O -0.59 -30.99 16.17 12.66 0.20 -30.78 16 14 N -0.60 -25.37 2.47 -851.12 -2.11 -27.47 16 15 C 0.06 1.78 9.02 127.77 1.15 2.93 16 16 C 0.26 13.94 5.15 85.63 0.44 14.38 16 17 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 18 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 19 C 0.01 0.36 5.46 84.66 0.46 0.82 16 20 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 21 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 25 C -0.12 -2.31 8.65 22.27 0.19 -2.11 16 26 C -0.12 -2.17 9.70 22.27 0.22 -1.96 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 29 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 30 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.12 2.48 7.95 -2.91 -0.02 2.46 16 32 H 0.09 1.72 5.79 -2.39 -0.01 1.71 16 33 H 0.05 1.51 5.96 -2.39 -0.01 1.50 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.39 11.28 8.66 -74.06 -0.64 10.63 16 36 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.07 2.24 8.11 -2.39 -0.02 2.22 16 38 H 0.10 2.25 3.21 -2.39 -0.01 2.24 16 39 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 40 H -0.01 -0.34 7.49 -2.39 -0.02 -0.35 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.13 2.16 7.08 -2.91 -0.02 2.14 16 43 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -75.10 349.44 3.82 -71.28 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.37 Total: 21.56 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 4.75 Total: -6.44 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.82 Total: -83.69 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -1.51 Total: -49.61 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -75.10 3.82 -71.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344194090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.020 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds