Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38229 * 120.00558 * 2 1 4 4 C 1.38231 * 120.00407 * 179.97438 * 3 2 1 5 5 C 1.38237 * 119.99861 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99943 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.47224 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47410 * 239.99811 * 6 5 4 9 9 C 1.53002 * 109.47344 * 119.99642 * 6 5 4 10 10 H 1.09002 * 109.47070 * 305.00057 * 9 6 5 11 11 O 1.42903 * 109.46923 * 65.00222 * 9 6 5 12 12 C 1.50701 * 109.47419 * 184.99983 * 9 6 5 13 13 O 1.21279 * 120.00074 * 245.00409 * 12 9 6 14 14 N 1.34778 * 119.99965 * 64.99848 * 12 9 6 15 15 C 1.46497 * 119.99736 * 179.97438 * 14 12 9 16 16 H 1.08991 * 109.47740 * 325.00319 * 15 14 12 17 17 C 1.53006 * 109.46992 * 85.00406 * 15 14 12 18 18 C 1.50703 * 109.46854 * 205.00266 * 15 14 12 19 19 H 1.08000 * 120.00120 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99695 * 180.02562 * 18 15 14 21 21 N 1.31518 * 120.00351 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99755 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.47116 * 89.99614 * 22 20 18 24 24 H 1.48500 * 109.47152 * 209.99667 * 22 20 18 25 25 H 1.48501 * 109.47216 * 330.00042 * 22 20 18 26 26 C 1.38238 * 120.00089 * 0.27521 * 5 4 3 27 27 C 1.38237 * 119.99703 * 359.51754 * 26 5 4 28 28 H 1.08993 * 109.47434 * 89.99827 * 1 2 3 29 29 H 1.09003 * 109.46938 * 210.00353 * 1 2 3 30 30 H 1.09000 * 109.46770 * 329.99539 * 1 2 3 31 31 H 1.08002 * 119.99647 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99942 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47027 * 59.99659 * 8 6 5 34 34 H 1.08997 * 109.47805 * 180.02562 * 8 6 5 35 35 H 1.09003 * 109.46952 * 300.00644 * 8 6 5 36 36 H 0.96700 * 114.00234 * 59.99815 * 11 9 6 37 37 H 0.97002 * 119.99484 * 0.02562 * 14 12 9 38 38 H 1.09000 * 109.46856 * 299.99630 * 17 15 14 39 39 H 1.09002 * 109.47088 * 59.99836 * 17 15 14 40 40 H 1.09001 * 109.46714 * 179.97438 * 17 15 14 41 41 H 0.96994 * 119.99586 * 180.02562 * 21 20 18 42 42 H 1.07991 * 119.99748 * 179.73074 * 26 5 4 43 43 H 1.07994 * 119.99620 * 180.27520 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7786 -0.0003 0.0028 7 1 6.1420 1.0274 0.0021 8 6 6.2896 -0.7221 -1.2457 9 6 6.2877 -0.7209 1.2528 10 1 5.8524 -0.2609 2.1400 11 8 5.9097 -2.0979 1.1959 12 6 7.7896 -0.6146 1.3174 13 8 8.4727 -1.6123 1.2236 14 7 8.3736 0.5892 1.4793 15 6 9.8335 0.6924 1.5426 16 1 10.2383 -0.1845 2.0475 17 6 10.4013 0.7714 0.1240 18 6 10.2166 1.9335 2.3069 19 1 9.4494 2.5809 2.7051 20 6 11.5468 2.2431 2.4967 21 7 12.4812 1.4551 2.0113 22 14 12.0216 3.7818 3.4434 23 1 12.1480 3.4558 4.8866 24 1 13.3199 4.2942 2.9361 25 1 10.9745 4.8187 3.2600 26 6 3.5805 -1.1974 -0.0036 27 6 2.1981 -1.1973 0.0002 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1324 -0.0004 32 1 4.1206 2.1323 0.0001 33 1 5.9270 -0.2087 -2.1362 34 1 7.3796 -0.7226 -1.2447 35 1 5.9262 -1.7498 -1.2455 36 1 6.2624 -2.5713 0.4300 37 1 7.8271 1.3871 1.5545 38 1 10.1241 -0.1262 -0.4287 39 1 9.9965 1.6486 -0.3810 40 1 11.4875 0.8487 0.1712 41 1 13.4168 1.6728 2.1452 42 1 4.1204 -2.1326 -0.0072 43 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344488156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -83.996872 kcal Electronic energy + Delta-G solvation = -23367.056508 eV Core-core repulsion = 19990.258169 eV Total energy + Delta-G solvation = -3376.798338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23813 -38.99828 -36.76776 -34.85287 -34.04788 -32.44738 -31.31063 -30.93631 -29.23350 -26.93847 -26.59437 -25.27667 -22.90718 -22.56764 -21.12425 -20.29863 -19.37569 -17.91145 -16.54312 -16.16688 -15.91084 -15.76110 -15.21923 -14.94197 -14.69125 -14.10436 -14.03818 -13.81414 -13.49819 -13.27606 -13.11335 -12.58675 -12.44489 -12.30946 -12.16212 -11.89752 -11.71268 -11.57636 -11.41864 -11.10698 -11.04326 -10.98473 -10.91239 -10.77573 -10.36574 -10.27369 -10.24137 -9.09384 -8.94290 -8.89603 -8.58381 -8.44713 -7.96861 -6.14866 -4.24421 1.27233 1.39687 3.22773 3.24463 3.29857 3.31480 3.69957 3.98737 4.34109 4.38881 4.64540 4.71515 4.83025 4.91418 5.02518 5.03684 5.17644 5.21178 5.31125 5.38260 5.42451 5.50180 5.62033 5.67865 5.73027 5.82184 5.91244 6.04271 6.07802 6.18980 6.40799 6.54434 6.64602 6.78038 6.91228 6.98899 7.10893 7.40320 7.48592 7.61431 7.68603 7.88072 8.11716 8.60122 8.74059 9.04478 9.43159 10.91071 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.003462 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.013821 B = 8086.295605 C = 8731.148854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.125 4.125 4 C -0.112 4.112 5 C -0.078 4.078 6 C -0.078 4.078 7 H 0.093 0.907 8 C -0.150 4.150 9 C 0.098 3.902 10 H 0.118 0.882 11 O -0.537 6.537 12 C 0.476 3.524 13 O -0.548 6.548 14 N -0.704 5.704 15 C 0.264 3.736 16 H 0.048 0.952 17 C -0.146 4.146 18 C -0.535 4.535 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.095 4.095 27 C -0.125 4.125 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.377 0.623 37 H 0.388 0.612 38 H 0.014 0.986 39 H 0.026 0.974 40 H 0.090 0.910 41 H 0.265 0.735 42 H 0.132 0.868 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.285 -1.264 -6.223 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.130 4.130 5 C -0.078 4.078 6 C -0.097 4.097 7 H 0.111 0.889 8 C -0.208 4.208 9 C 0.035 3.965 10 H 0.136 0.864 11 O -0.342 6.342 12 C 0.260 3.740 13 O -0.426 6.426 14 N -0.353 5.353 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.204 4.204 18 C -0.573 4.573 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.112 4.112 27 C -0.143 4.143 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.227 0.773 37 H 0.221 0.779 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.150 0.850 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.865 -1.850 -5.755 20.764 hybrid contribution 0.411 1.228 0.089 1.298 sum -19.454 -0.621 -5.666 20.272 Atomic orbital electron populations 1.20771 0.91563 1.02578 1.02055 1.19906 0.95852 0.93383 1.00293 1.20951 0.94116 0.97360 1.01831 1.21086 0.94160 0.97576 1.00178 1.19693 0.94438 0.93341 1.00344 1.20770 0.91799 1.01487 0.95663 0.88923 1.21865 1.01958 1.00292 0.96638 1.21911 0.91937 0.83823 0.98797 0.86447 1.86544 1.74861 1.20964 1.51851 1.21203 0.90399 0.84640 0.77808 1.90670 1.64840 1.36252 1.50881 1.46574 1.10712 1.07241 1.70803 1.18751 0.73273 0.97990 0.93787 0.93413 1.22069 1.04557 0.96748 0.97062 1.21218 0.92355 1.08266 1.35476 0.92061 1.24892 0.96248 0.97054 0.95510 1.69901 1.00464 1.37230 1.44481 0.86445 0.77973 0.82659 0.80006 1.20539 1.21061 1.19823 1.21231 0.93772 0.98392 0.97838 1.21034 0.94335 0.97296 1.01597 0.91433 0.91709 0.91742 0.86367 0.86018 0.91816 0.91372 0.92193 0.77300 0.77939 0.96736 0.95453 0.89136 0.92549 0.85020 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.26 9.70 -39.59 -0.38 -1.65 16 4 C -0.11 -1.22 9.67 -39.58 -0.38 -1.60 16 5 C -0.08 -0.91 4.78 -104.62 -0.50 -1.41 16 6 C -0.08 -0.95 2.45 -91.77 -0.22 -1.18 16 7 H 0.09 1.09 7.51 -51.92 -0.39 0.70 16 8 C -0.15 -1.80 8.39 37.16 0.31 -1.49 16 9 C 0.10 1.44 3.10 -27.88 -0.09 1.35 16 10 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 11 O -0.54 -7.85 10.35 -55.09 -0.57 -8.42 16 12 C 0.48 9.17 6.11 -10.98 -0.07 9.10 16 13 O -0.55 -12.80 15.99 -14.30 -0.23 -13.03 16 14 N -0.70 -14.18 4.97 -54.93 -0.27 -14.45 16 15 C 0.26 6.61 2.56 -69.08 -0.18 6.43 16 16 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 17 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 18 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -24.76 11.32 55.43 0.63 -24.13 16 22 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.09 -1.08 8.43 -39.58 -0.33 -1.42 16 27 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.15 7.95 -52.49 -0.42 0.73 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.97 7.38 -51.93 -0.38 0.58 16 35 H 0.06 0.64 5.95 -51.93 -0.31 0.33 16 36 H 0.38 4.90 6.88 45.56 0.31 5.21 16 37 H 0.39 6.72 8.24 -40.82 -0.34 6.38 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.13 1.46 5.74 -52.49 -0.30 1.16 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -30.98 349.90 -8.60 -39.58 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.87 Total: 11.11 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.53 Total: -11.42 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.35 Total: -38.59 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.80 Total: -21.45 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.98 -8.60 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344488156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.420 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds