Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38229 * 120.00558 * 2 1 4 4 C 1.38231 * 120.00407 * 179.97438 * 3 2 1 5 5 C 1.38237 * 119.99861 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99943 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.47224 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47410 * 239.99811 * 6 5 4 9 9 C 1.53002 * 109.47344 * 119.99642 * 6 5 4 10 10 H 1.09002 * 109.47070 * 305.00057 * 9 6 5 11 11 O 1.42903 * 109.46923 * 65.00222 * 9 6 5 12 12 C 1.50701 * 109.47419 * 184.99983 * 9 6 5 13 13 O 1.21279 * 120.00074 * 245.00409 * 12 9 6 14 14 N 1.34778 * 119.99965 * 64.99848 * 12 9 6 15 15 C 1.46497 * 119.99736 * 179.97438 * 14 12 9 16 16 H 1.08991 * 109.47740 * 325.00319 * 15 14 12 17 17 C 1.53006 * 109.46992 * 85.00406 * 15 14 12 18 18 C 1.50703 * 109.46854 * 205.00266 * 15 14 12 19 19 H 1.08000 * 120.00120 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99695 * 180.02562 * 18 15 14 21 21 N 1.31518 * 120.00351 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99755 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.47116 * 89.99614 * 22 20 18 24 24 H 1.48500 * 109.47152 * 209.99667 * 22 20 18 25 25 H 1.48501 * 109.47216 * 330.00042 * 22 20 18 26 26 C 1.38238 * 120.00089 * 0.27521 * 5 4 3 27 27 C 1.38237 * 119.99703 * 359.51754 * 26 5 4 28 28 H 1.08993 * 109.47434 * 89.99827 * 1 2 3 29 29 H 1.09003 * 109.46938 * 210.00353 * 1 2 3 30 30 H 1.09000 * 109.46770 * 329.99539 * 1 2 3 31 31 H 1.08002 * 119.99647 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99942 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47027 * 59.99659 * 8 6 5 34 34 H 1.08997 * 109.47805 * 180.02562 * 8 6 5 35 35 H 1.09003 * 109.46952 * 300.00644 * 8 6 5 36 36 H 0.96700 * 114.00234 * 59.99815 * 11 9 6 37 37 H 0.97002 * 119.99484 * 0.02562 * 14 12 9 38 38 H 1.09000 * 109.46856 * 299.99630 * 17 15 14 39 39 H 1.09002 * 109.47088 * 59.99836 * 17 15 14 40 40 H 1.09001 * 109.46714 * 179.97438 * 17 15 14 41 41 H 0.96994 * 119.99586 * 180.02562 * 21 20 18 42 42 H 1.07991 * 119.99748 * 179.73074 * 26 5 4 43 43 H 1.07994 * 119.99620 * 180.27520 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7786 -0.0003 0.0028 7 1 6.1420 1.0274 0.0021 8 6 6.2896 -0.7221 -1.2457 9 6 6.2877 -0.7209 1.2528 10 1 5.8524 -0.2609 2.1400 11 8 5.9097 -2.0979 1.1959 12 6 7.7896 -0.6146 1.3174 13 8 8.4727 -1.6123 1.2236 14 7 8.3736 0.5892 1.4793 15 6 9.8335 0.6924 1.5426 16 1 10.2383 -0.1845 2.0475 17 6 10.4013 0.7714 0.1240 18 6 10.2166 1.9335 2.3069 19 1 9.4494 2.5809 2.7051 20 6 11.5468 2.2431 2.4967 21 7 12.4812 1.4551 2.0113 22 14 12.0216 3.7818 3.4434 23 1 12.1480 3.4558 4.8866 24 1 13.3199 4.2942 2.9361 25 1 10.9745 4.8187 3.2600 26 6 3.5805 -1.1974 -0.0036 27 6 2.1981 -1.1973 0.0002 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1324 -0.0004 32 1 4.1206 2.1323 0.0001 33 1 5.9270 -0.2087 -2.1362 34 1 7.3796 -0.7226 -1.2447 35 1 5.9262 -1.7498 -1.2455 36 1 6.2624 -2.5713 0.4300 37 1 7.8271 1.3871 1.5545 38 1 10.1241 -0.1262 -0.4287 39 1 9.9965 1.6486 -0.3810 40 1 11.4875 0.8487 0.1712 41 1 13.4168 1.6728 2.1452 42 1 4.1204 -2.1326 -0.0072 43 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344488156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -102.903355 kcal Electronic energy + Delta-G solvation = -23367.876354 eV Core-core repulsion = 19990.258169 eV Total energy + Delta-G solvation = -3377.618185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43961 -40.14491 -38.05814 -36.64522 -35.12477 -34.27732 -32.25892 -31.72324 -30.97835 -28.10837 -27.51947 -27.30898 -23.92205 -23.54062 -22.65564 -21.43089 -20.85608 -19.44694 -18.05531 -17.47563 -17.26355 -16.98236 -16.64212 -16.06145 -15.67947 -15.59050 -15.28169 -15.01689 -14.56979 -14.37734 -14.25194 -14.13587 -13.66563 -13.48022 -13.17786 -13.01966 -12.96678 -12.89364 -12.76855 -12.72049 -12.64921 -12.32942 -12.26732 -12.14359 -11.88939 -11.77148 -11.40870 -11.12149 -10.63506 -10.37060 -9.78591 -9.71658 -9.30145 -8.18357 -6.36049 0.47158 0.60899 1.44823 1.45264 1.55921 1.70711 2.31987 2.54442 2.91347 3.12186 3.24406 3.67028 3.76955 3.92541 4.06844 4.09617 4.17721 4.27842 4.37682 4.51902 4.63778 4.71792 4.74600 4.81114 4.88082 4.91328 4.93973 4.99974 5.04926 5.08846 5.19614 5.30254 5.36549 5.42237 5.59017 5.61684 5.67324 5.79563 5.81843 5.88569 6.09273 6.22030 6.48583 6.71743 6.92344 7.30716 7.49458 8.87813 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.003462 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.013821 B = 8086.295605 C = 8731.148854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.119 4.119 5 C -0.090 4.090 6 C -0.067 4.067 7 H 0.099 0.901 8 C -0.148 4.148 9 C 0.114 3.886 10 H 0.130 0.870 11 O -0.540 6.540 12 C 0.474 3.526 13 O -0.593 6.593 14 N -0.699 5.699 15 C 0.270 3.730 16 H -0.005 1.005 17 C -0.131 4.131 18 C -0.548 4.548 19 H 0.074 0.926 20 C 0.014 3.986 21 N -0.918 5.918 22 Si 0.972 3.028 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.258 1.258 26 C -0.106 4.106 27 C -0.135 4.135 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.384 0.616 37 H 0.405 0.595 38 H 0.013 0.987 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.265 0.735 42 H 0.130 0.870 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.753 0.422 -6.198 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.137 4.137 5 C -0.090 4.090 6 C -0.086 4.086 7 H 0.117 0.883 8 C -0.205 4.205 9 C 0.051 3.949 10 H 0.148 0.852 11 O -0.347 6.347 12 C 0.261 3.739 13 O -0.474 6.474 14 N -0.349 5.349 15 C 0.167 3.833 16 H 0.013 0.987 17 C -0.190 4.190 18 C -0.586 4.586 19 H 0.092 0.908 20 C -0.186 4.186 21 N -0.556 5.556 22 Si 0.796 3.204 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.182 1.182 26 C -0.124 4.124 27 C -0.153 4.153 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.240 0.760 38 H 0.032 0.968 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.148 0.852 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.380 -0.150 -5.737 23.105 hybrid contribution 1.118 0.629 0.065 1.284 sum -21.263 0.479 -5.673 22.012 Atomic orbital electron populations 1.20820 0.89706 1.03431 1.02927 1.20271 0.97360 0.93127 0.99081 1.21248 0.94028 0.98354 1.01347 1.21298 0.94751 0.97749 0.99875 1.19592 0.93595 0.93914 1.01857 1.20654 0.92583 1.01268 0.94094 0.88277 1.21840 1.00123 1.01265 0.97266 1.21856 0.87851 0.84404 1.00789 0.85222 1.86532 1.74531 1.21114 1.52506 1.22100 0.92435 0.83407 0.75986 1.90646 1.66512 1.37660 1.52618 1.46305 1.08985 1.08582 1.70994 1.18337 0.75932 0.95603 0.93429 0.98691 1.21872 1.02885 0.97320 0.96951 1.21564 0.92936 1.08525 1.35550 0.90756 1.25804 0.96273 1.00156 0.96364 1.70054 1.00777 1.39078 1.45701 0.85350 0.77837 0.78998 0.78190 1.20509 1.20983 1.18190 1.21324 0.94423 0.98328 0.98345 1.21276 0.94145 0.98354 1.01549 0.90453 0.91035 0.90779 0.84459 0.84795 0.90507 0.94010 0.91200 0.76533 0.75979 0.96824 0.93881 0.91651 0.92561 0.85226 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.24 0.71 -0.60 16 2 C -0.10 -1.71 5.88 -19.87 -0.12 -1.83 16 3 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 4 C -0.12 -2.30 9.67 22.27 0.22 -2.08 16 5 C -0.09 -1.92 4.78 -19.87 -0.09 -2.01 16 6 C -0.07 -1.54 2.45 -11.54 -0.03 -1.57 16 7 H 0.10 2.15 7.51 -2.38 -0.02 2.13 16 8 C -0.15 -3.42 8.39 71.98 0.60 -2.82 16 9 C 0.11 3.23 3.10 29.85 0.09 3.32 16 10 H 0.13 3.41 8.14 -2.39 -0.02 3.40 16 11 O -0.54 -15.47 10.35 -129.99 -1.35 -16.81 16 12 C 0.47 18.46 6.11 87.66 0.54 18.99 16 13 O -0.59 -28.63 15.99 15.96 0.26 -28.38 16 14 N -0.70 -28.18 4.97 -446.10 -2.22 -30.39 16 15 C 0.27 13.88 2.56 44.25 0.11 14.00 16 16 H 0.00 -0.30 7.58 -2.39 -0.02 -0.31 16 17 C -0.13 -6.55 9.26 71.98 0.67 -5.89 16 18 C -0.55 -28.70 8.73 25.60 0.22 -28.47 16 19 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 20 C 0.01 0.75 5.30 84.65 0.45 1.20 16 21 N -0.92 -52.56 11.32 21.45 0.24 -52.31 16 22 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 C -0.11 -2.27 8.43 22.27 0.19 -2.08 16 27 C -0.14 -2.57 9.70 22.27 0.22 -2.36 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 30 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 31 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.13 2.18 7.95 -2.91 -0.02 2.15 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.04 1.18 7.38 -2.39 -0.02 1.17 16 35 H 0.07 1.45 5.95 -2.39 -0.01 1.43 16 36 H 0.38 9.89 6.88 -74.06 -0.51 9.38 16 37 H 0.40 13.56 8.24 -92.71 -0.76 12.80 16 38 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 3.60 6.07 -2.39 -0.01 3.58 16 41 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.13 2.72 5.74 -2.92 -0.02 2.71 16 43 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -67.69 349.90 2.70 -64.98 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.25 Total: 33.50 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 3.99 Total: -14.30 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -1.97 Total: -82.71 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -1.09 Total: -45.19 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -67.69 2.70 -64.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344488156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.921 kcal (2) G-P(sol) polarization free energy of solvation -67.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds