Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99842 * 2 1 4 4 C 1.38751 * 120.05576 * 359.72992 * 3 2 1 5 5 C 1.38119 * 119.94506 * 179.69861 * 4 3 2 6 6 C 1.38291 * 120.05264 * 0.59391 * 5 4 3 7 7 C 1.50703 * 119.94545 * 179.69683 * 6 5 4 8 8 C 1.38240 * 120.11187 * 359.68436 * 6 5 4 9 9 C 1.38172 * 120.05496 * 0.02562 * 8 6 5 10 10 C 1.50698 * 120.02471 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.46839 * 265.01691 * 10 9 8 12 12 O 1.21281 * 120.00099 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99933 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46983 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47047 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47250 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99778 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00053 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00168 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47601 * 60.00061 * 21 19 17 23 23 H 1.48502 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46977 * 299.99541 * 21 19 17 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 299.99727 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99782 * 1 2 3 28 28 H 1.08001 * 120.02685 * 359.97255 * 4 3 2 29 29 H 1.07999 * 119.97999 * 180.29788 * 5 4 3 30 30 H 1.08995 * 109.47518 * 269.98540 * 7 6 5 31 31 H 1.09002 * 109.46995 * 29.98376 * 7 6 5 32 32 H 1.09006 * 109.46988 * 149.97757 * 7 6 5 33 33 H 1.07999 * 119.97654 * 180.02562 * 8 6 5 34 34 H 1.08994 * 109.47645 * 25.02231 * 10 9 8 35 35 H 1.08998 * 109.47107 * 145.02475 * 10 9 8 36 36 H 0.97005 * 120.00098 * 0.02562 * 13 11 10 37 37 H 1.08996 * 109.47290 * 299.99676 * 14 13 11 38 38 H 1.08998 * 109.46969 * 60.00047 * 14 13 11 39 39 H 1.08994 * 109.47484 * 300.00155 * 15 14 13 40 40 H 1.09003 * 109.46705 * 60.00559 * 15 14 13 41 41 H 1.08994 * 109.47493 * 300.00625 * 16 15 14 42 42 H 1.09004 * 109.46969 * 60.00293 * 16 15 14 43 43 H 0.96998 * 119.99798 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 0.0006 6 6 3.3019 3.6758 0.0002 7 6 3.9860 5.0186 0.0002 8 6 4.0559 2.5172 0.0000 9 6 3.4311 1.2849 -0.0003 10 6 4.2538 0.0223 -0.0010 11 6 4.4240 -0.4654 -1.4168 12 8 3.9268 0.1518 -2.3347 13 7 5.1290 -1.5874 -1.6628 14 6 5.2950 -2.0612 -3.0392 15 6 6.1302 -3.3432 -3.0400 16 6 6.3030 -3.8383 -4.4773 17 6 7.1261 -5.1006 -4.4783 18 1 7.4893 -5.5091 -3.5468 19 6 7.4156 -5.7340 -5.6682 20 7 6.9730 -5.2368 -6.8025 21 14 8.4353 -7.2991 -5.6692 22 1 7.7444 -8.3407 -4.8673 23 1 8.6042 -7.7789 -7.0644 24 1 9.7685 -7.0216 -5.0770 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2128 2.3203 -0.0105 29 1 1.3340 4.5114 0.0011 30 1 4.1509 5.3424 -1.0274 31 1 3.3580 5.7464 0.5141 32 1 4.9440 4.9383 0.5140 33 1 5.1344 2.5753 0.0001 34 1 5.2324 0.2259 0.4333 35 1 3.7468 -0.7421 0.5879 36 1 5.5264 -2.0814 -0.9286 37 1 4.3164 -2.2644 -3.4740 38 1 5.8026 -1.2969 -3.6277 39 1 7.1087 -3.1396 -2.6053 40 1 5.6229 -4.1076 -2.4513 41 1 5.3243 -4.0419 -4.9117 42 1 6.8100 -3.0740 -5.0664 43 1 7.1763 -5.6826 -7.6396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349287321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = -76.064770 kcal Electronic energy + Delta-G solvation = -22270.135080 eV Core-core repulsion = 18893.680703 eV Total energy + Delta-G solvation = -3376.454377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57866 -39.11585 -37.77270 -35.34586 -33.38789 -33.22258 -31.77264 -31.14819 -28.34806 -28.03844 -26.37147 -25.92725 -23.18411 -22.16150 -21.12505 -20.62223 -19.67932 -18.13122 -16.79350 -16.66399 -16.40642 -15.76938 -15.59206 -15.23611 -14.82514 -14.51179 -14.42862 -14.14606 -13.86748 -13.80318 -13.35371 -13.23783 -12.52303 -12.29692 -12.22853 -12.18355 -12.01016 -11.79994 -11.63022 -11.38359 -11.00980 -10.95437 -10.86455 -10.69185 -10.60479 -9.82858 -9.81079 -9.36356 -9.12350 -8.92318 -8.66978 -8.35352 -8.10039 -6.00066 -4.03219 1.17915 1.30760 2.93830 3.15207 3.33093 3.37467 3.38339 3.40974 3.78399 4.45659 4.50120 4.61557 4.71511 4.84592 4.96850 5.05554 5.10712 5.12094 5.22775 5.29524 5.35476 5.38595 5.44538 5.46965 5.56383 5.74852 5.79279 5.83548 5.94538 6.16602 6.21662 6.25122 6.46423 6.57494 6.64787 6.66501 6.89879 7.04873 7.25886 7.65556 7.78861 7.82899 7.98932 8.39805 8.54150 9.03387 9.60768 11.11252 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.002504 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.511778 B =11180.941572 C =11687.314891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.138 3.862 4 C -0.205 4.205 5 C -0.083 4.083 6 C -0.125 4.125 7 C -0.108 4.108 8 C -0.070 4.070 9 C -0.090 4.090 10 C -0.095 4.095 11 C 0.512 3.488 12 O -0.537 6.537 13 N -0.729 5.729 14 C 0.118 3.882 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.397 0.603 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 17.160 18.906 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.093 3.907 4 C -0.224 4.224 5 C -0.101 4.101 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.088 4.088 9 C -0.091 4.091 10 C -0.135 4.135 11 C 0.297 3.703 12 O -0.414 6.414 13 N -0.380 5.380 14 C -0.005 4.005 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.145 0.855 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.948 17.373 18.019 27.320 hybrid contribution 0.423 -1.062 0.148 1.153 sum -10.524 16.311 18.167 26.587 Atomic orbital electron populations 1.23043 0.78506 1.03973 1.01123 1.86077 1.21241 1.26801 1.88445 1.18751 0.91657 0.84278 0.96012 1.21142 0.99831 0.92293 1.09105 1.20760 0.93921 0.96868 0.98541 1.19747 0.93626 0.95397 1.03783 1.20704 1.00142 0.93369 1.02235 1.20717 0.99610 0.90528 0.97932 1.18617 0.90257 0.94609 1.05593 1.20496 1.01082 0.96299 0.95613 1.20444 0.78291 0.80685 0.90832 1.90701 1.47882 1.56463 1.46345 1.46195 1.54654 1.26735 1.10437 1.21604 1.00649 0.97086 0.81175 1.21881 0.97878 0.93822 1.02243 1.19025 0.97290 0.95975 0.89091 1.21175 1.33036 1.09157 0.92715 0.92696 1.25034 0.96114 0.97673 0.95664 1.69959 1.45695 1.39982 0.97702 0.86639 0.80729 0.83535 0.76966 1.20243 1.21282 1.20243 0.88241 0.92853 0.92640 0.85568 0.86018 0.91380 0.91870 0.91704 0.85502 0.88222 0.87815 0.76908 0.91965 0.91950 0.92757 0.92762 0.96315 0.96312 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -3.93 9.63 -19.44 -0.19 -4.11 16 3 C 0.14 1.78 6.66 -39.22 -0.26 1.51 16 4 C -0.21 -2.24 9.04 -39.44 -0.36 -2.60 16 5 C -0.08 -0.84 9.69 -39.61 -0.38 -1.22 16 6 C -0.13 -1.31 5.88 -104.60 -0.62 -1.92 16 7 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 8 C -0.07 -0.80 9.33 -39.60 -0.37 -1.17 16 9 C -0.09 -1.14 4.39 -104.48 -0.46 -1.60 16 10 C -0.09 -1.10 5.55 -29.03 -0.16 -1.26 16 11 C 0.51 8.04 7.82 -10.98 -0.09 7.96 16 12 O -0.54 -10.80 16.03 5.56 0.09 -10.71 16 13 N -0.73 -10.91 5.56 -60.29 -0.33 -11.25 16 14 C 0.12 2.16 5.67 -4.04 -0.02 2.14 16 15 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 27 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 28 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.10 1.07 7.69 -51.93 -0.40 0.68 16 36 H 0.40 4.70 8.47 -40.82 -0.35 4.35 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -34.87 363.35 -8.19 -43.07 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.90 Total: 0.31 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.05 Total: -13.01 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.40 Total: -37.64 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.10 Total: -14.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.87 -8.19 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349287321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.998 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds