Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99842 * 2 1 4 4 C 1.38751 * 120.05576 * 359.72992 * 3 2 1 5 5 C 1.38119 * 119.94506 * 179.69861 * 4 3 2 6 6 C 1.38291 * 120.05264 * 0.59391 * 5 4 3 7 7 C 1.50703 * 119.94545 * 179.69683 * 6 5 4 8 8 C 1.38240 * 120.11187 * 359.68436 * 6 5 4 9 9 C 1.38172 * 120.05496 * 0.02562 * 8 6 5 10 10 C 1.50698 * 120.02471 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.46839 * 265.01691 * 10 9 8 12 12 O 1.21281 * 120.00099 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99933 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46983 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47047 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47250 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99778 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00053 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00168 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47601 * 60.00061 * 21 19 17 23 23 H 1.48502 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46977 * 299.99541 * 21 19 17 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 299.99727 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99782 * 1 2 3 28 28 H 1.08001 * 120.02685 * 359.97255 * 4 3 2 29 29 H 1.07999 * 119.97999 * 180.29788 * 5 4 3 30 30 H 1.08995 * 109.47518 * 269.98540 * 7 6 5 31 31 H 1.09002 * 109.46995 * 29.98376 * 7 6 5 32 32 H 1.09006 * 109.46988 * 149.97757 * 7 6 5 33 33 H 1.07999 * 119.97654 * 180.02562 * 8 6 5 34 34 H 1.08994 * 109.47645 * 25.02231 * 10 9 8 35 35 H 1.08998 * 109.47107 * 145.02475 * 10 9 8 36 36 H 0.97005 * 120.00098 * 0.02562 * 13 11 10 37 37 H 1.08996 * 109.47290 * 299.99676 * 14 13 11 38 38 H 1.08998 * 109.46969 * 60.00047 * 14 13 11 39 39 H 1.08994 * 109.47484 * 300.00155 * 15 14 13 40 40 H 1.09003 * 109.46705 * 60.00559 * 15 14 13 41 41 H 1.08994 * 109.47493 * 300.00625 * 16 15 14 42 42 H 1.09004 * 109.46969 * 60.00293 * 16 15 14 43 43 H 0.96998 * 119.99798 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 0.0006 6 6 3.3019 3.6758 0.0002 7 6 3.9860 5.0186 0.0002 8 6 4.0559 2.5172 0.0000 9 6 3.4311 1.2849 -0.0003 10 6 4.2538 0.0223 -0.0010 11 6 4.4240 -0.4654 -1.4168 12 8 3.9268 0.1518 -2.3347 13 7 5.1290 -1.5874 -1.6628 14 6 5.2950 -2.0612 -3.0392 15 6 6.1302 -3.3432 -3.0400 16 6 6.3030 -3.8383 -4.4773 17 6 7.1261 -5.1006 -4.4783 18 1 7.4893 -5.5091 -3.5468 19 6 7.4156 -5.7340 -5.6682 20 7 6.9730 -5.2368 -6.8025 21 14 8.4353 -7.2991 -5.6692 22 1 7.7444 -8.3407 -4.8673 23 1 8.6042 -7.7789 -7.0644 24 1 9.7685 -7.0216 -5.0770 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2128 2.3203 -0.0105 29 1 1.3340 4.5114 0.0011 30 1 4.1509 5.3424 -1.0274 31 1 3.3580 5.7464 0.5141 32 1 4.9440 4.9383 0.5140 33 1 5.1344 2.5753 0.0001 34 1 5.2324 0.2259 0.4333 35 1 3.7468 -0.7421 0.5879 36 1 5.5264 -2.0814 -0.9286 37 1 4.3164 -2.2644 -3.4740 38 1 5.8026 -1.2969 -3.6277 39 1 7.1087 -3.1396 -2.6053 40 1 5.6229 -4.1076 -2.4513 41 1 5.3243 -4.0419 -4.9117 42 1 6.8100 -3.0740 -5.0664 43 1 7.1763 -5.6826 -7.6396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349287321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = -98.341148 kcal Electronic energy + Delta-G solvation = -22271.101056 eV Core-core repulsion = 18893.680703 eV Total energy + Delta-G solvation = -3377.420353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46461 -40.32614 -38.56543 -36.95326 -35.16893 -34.27092 -32.99954 -32.46744 -29.56445 -28.73133 -27.95843 -26.69234 -24.95887 -23.06645 -22.30546 -22.08386 -20.92647 -18.95179 -18.53962 -17.93761 -17.50152 -16.91787 -16.64227 -16.55269 -16.45057 -15.75198 -15.47290 -15.20169 -14.81806 -14.72012 -14.42169 -14.19229 -14.09139 -13.73924 -13.65134 -13.15299 -12.98996 -12.87214 -12.71318 -12.63918 -12.55444 -12.40939 -12.21562 -11.75057 -11.70896 -11.67018 -11.57914 -11.25949 -10.86556 -10.55277 -10.06250 -9.79017 -8.91488 -8.19641 -6.31608 0.35288 0.49175 1.41506 1.44949 1.52771 1.70961 2.25869 2.40949 2.43043 2.85215 3.13857 3.66890 3.85556 3.98793 4.04307 4.18494 4.20330 4.25098 4.34289 4.36414 4.43521 4.47574 4.54831 4.59585 4.67985 4.76295 4.79462 4.89158 4.93884 5.00641 5.12414 5.16468 5.22218 5.37736 5.45561 5.46161 5.53742 5.69383 5.69831 5.83483 5.91091 6.21661 6.46395 6.64450 6.85894 7.33203 7.38140 8.92458 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.002504 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.511778 B =11180.941572 C =11687.314891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.214 4.214 5 C -0.088 4.088 6 C -0.135 4.135 7 C -0.106 4.106 8 C -0.083 4.083 9 C -0.116 4.116 10 C -0.084 4.084 11 C 0.510 3.490 12 O -0.586 6.586 13 N -0.717 5.717 14 C 0.131 3.869 15 C -0.100 4.100 16 C 0.023 3.977 17 C -0.542 4.542 18 H 0.068 0.932 19 C -0.005 4.005 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.264 1.264 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.416 0.584 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.067 0.933 41 H -0.010 1.010 42 H -0.009 1.009 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 17.167 21.157 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C 0.070 3.930 4 C -0.232 4.232 5 C -0.106 4.106 6 C -0.135 4.135 7 C -0.163 4.163 8 C -0.101 4.101 9 C -0.117 4.117 10 C -0.123 4.123 11 C 0.298 3.702 12 O -0.466 6.466 13 N -0.369 5.369 14 C 0.007 3.993 15 C -0.138 4.138 16 C -0.014 4.014 17 C -0.580 4.580 18 H 0.086 0.914 19 C -0.202 4.202 20 N -0.577 5.577 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.189 1.189 25 H 0.131 0.869 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.253 0.747 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.400 17.371 20.326 28.689 hybrid contribution 0.185 -0.999 -0.568 1.164 sum -10.215 16.372 19.757 27.618 Atomic orbital electron populations 1.23273 0.76868 1.05203 1.01991 1.86023 1.23120 1.27153 1.88655 1.19059 0.92190 0.84905 0.96867 1.21448 1.00886 0.92179 1.08712 1.21141 0.94263 0.97574 0.97632 1.20147 0.94054 0.96357 1.02941 1.20745 1.00747 0.92217 1.02542 1.21008 1.00521 0.90622 0.97942 1.18902 0.90716 0.95399 1.06723 1.20497 1.02960 0.96304 0.92530 1.21216 0.76909 0.79881 0.92173 1.90678 1.49781 1.57885 1.48261 1.45980 1.54641 1.26884 1.09428 1.21176 0.99052 0.96010 0.83067 1.21590 0.99183 0.94579 0.98473 1.18943 0.95109 0.95051 0.92318 1.21657 1.33103 1.09856 0.93355 0.91428 1.26056 0.97408 1.01535 0.95212 1.70114 1.47235 1.41845 0.98482 0.85444 0.79230 0.78906 0.77122 1.18967 1.21171 1.18917 0.86929 0.90901 0.92790 0.83787 0.83556 0.91458 0.90236 0.90736 0.84209 0.84941 0.86433 0.74682 0.93900 0.93522 0.91156 0.91386 0.99190 0.99068 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -8.35 9.63 -92.49 -0.89 -9.24 16 3 C 0.12 2.91 6.66 22.50 0.15 3.06 16 4 C -0.21 -4.49 9.04 22.36 0.20 -4.29 16 5 C -0.09 -1.66 9.69 22.25 0.22 -1.45 16 6 C -0.13 -2.64 5.88 -19.85 -0.12 -2.75 16 7 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 8 C -0.08 -1.82 9.33 22.25 0.21 -1.61 16 9 C -0.12 -2.89 4.39 -19.77 -0.09 -2.98 16 10 C -0.08 -1.82 5.55 29.10 0.16 -1.66 16 11 C 0.51 15.79 7.82 87.66 0.69 16.48 16 12 O -0.59 -24.05 16.03 -3.03 -0.05 -24.10 16 13 N -0.72 -20.76 5.56 -463.05 -2.57 -23.33 16 14 C 0.13 4.89 5.67 86.38 0.49 5.38 16 15 C -0.10 -3.97 5.27 30.60 0.16 -3.81 16 16 C 0.02 1.25 4.97 29.85 0.15 1.40 16 17 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 20 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 21 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 0.86 7.67 -2.38 -0.02 0.84 16 27 H 0.05 0.86 7.65 -2.39 -0.02 0.85 16 28 H 0.14 2.31 6.30 -2.91 -0.02 2.29 16 29 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 32 H 0.07 0.84 8.08 -2.38 -0.02 0.82 16 33 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.13 1.95 8.05 -2.39 -0.02 1.93 16 35 H 0.12 2.23 7.69 -2.39 -0.02 2.21 16 36 H 0.42 8.90 8.47 -92.70 -0.79 8.12 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -77.21 363.35 3.75 -73.46 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.21 Total: 16.47 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 4.74 Total: -21.68 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.29 Total: -81.04 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.94 Total: -33.34 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -77.21 3.75 -73.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349287321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.881 kcal (2) G-P(sol) polarization free energy of solvation -77.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds