Wall clock time and date at job start Tue Mar 31 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35898 * 117.00181 * 2 1 4 4 C 1.38755 * 120.05483 * 0.30154 * 3 2 1 5 5 C 1.38125 * 119.94063 * 180.20827 * 4 3 2 6 6 C 1.50700 * 119.96773 * 179.79358 * 5 4 3 7 7 C 1.50702 * 109.46869 * 269.71965 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47273 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46983 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00145 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00161 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99703 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00027 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47140 * 60.00723 * 17 15 13 19 19 H 1.48510 * 109.46754 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47297 * 300.00159 * 17 15 13 21 21 C 1.38288 * 120.05856 * 359.51170 * 5 4 3 22 22 C 1.38242 * 120.10960 * 0.23860 * 21 5 4 23 23 C 1.38160 * 120.05911 * 359.97438 * 22 21 5 24 24 C 1.50700 * 120.03242 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.47490 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46876 * 299.99755 * 1 2 3 27 27 H 1.08998 * 109.47613 * 59.99683 * 1 2 3 28 28 H 1.07996 * 120.02735 * 359.97438 * 4 3 2 29 29 H 1.09004 * 109.47210 * 149.72258 * 6 5 4 30 30 H 1.08994 * 109.47551 * 29.71910 * 6 5 4 31 31 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 32 32 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 33 33 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 34 34 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 35 35 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 36 36 H 1.08992 * 109.47143 * 300.00104 * 12 11 10 37 37 H 1.08997 * 109.46799 * 60.00311 * 12 11 10 38 38 H 0.97003 * 120.00173 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.94236 * 180.25272 * 21 5 4 40 40 H 1.08003 * 119.96785 * 180.02562 * 22 21 5 41 41 H 1.08998 * 109.47430 * 89.99757 * 24 23 22 42 42 H 1.09002 * 109.47035 * 210.00501 * 24 23 22 43 43 H 1.08998 * 109.46411 * 329.99949 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9209 3.6047 0.0020 6 6 1.1020 4.8698 0.0041 7 6 0.8284 5.2934 -1.4160 8 8 1.2559 4.6329 -2.3390 9 7 0.1035 6.4031 -1.6604 10 6 -0.1675 6.8116 -3.0409 11 6 -1.0031 8.0933 -3.0389 12 6 -1.2856 8.5203 -4.4807 13 6 -2.1081 9.7830 -4.4786 14 1 -2.3998 10.2360 -3.5425 15 6 -2.4883 10.3602 -5.6716 16 7 -2.1335 9.8084 -6.8115 17 14 -3.5072 11.9258 -5.6690 18 1 -2.7585 13.0025 -4.9723 19 1 -3.7826 12.3395 -7.0684 20 1 -4.7910 11.6797 -4.9643 21 6 3.3020 3.6757 0.0015 22 6 4.0560 2.5170 0.0004 23 6 3.4312 1.2848 0.0003 24 6 4.2537 0.0221 -0.0002 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2128 2.3203 0.0108 29 1 1.6519 5.6577 0.5188 30 1 0.1577 4.6905 0.5180 31 1 -0.2386 6.9313 -0.9223 32 1 0.7748 6.9935 -3.5577 33 1 -0.7158 6.0208 -3.5529 34 1 -1.9454 7.9119 -2.5220 35 1 -0.4543 8.8839 -2.5271 36 1 -0.3431 8.7019 -4.9971 37 1 -1.8341 7.7298 -4.9928 38 1 -2.4013 10.2142 -7.6509 39 1 3.7923 4.6380 0.0022 40 1 5.1344 2.5752 0.0005 41 1 4.4524 -0.2827 1.0272 42 1 3.7061 -0.7680 -0.5142 43 1 5.1975 0.2036 -0.5144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349299411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:43 Heat of formation + Delta-G solvation = -76.843227 kcal Electronic energy + Delta-G solvation = -21992.535435 eV Core-core repulsion = 18616.047301 eV Total energy + Delta-G solvation = -3376.488133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56128 -39.42157 -37.61990 -35.43154 -33.87806 -33.31590 -31.35559 -30.31128 -29.77313 -27.78459 -26.84126 -25.21634 -23.01694 -22.40895 -21.33037 -20.72615 -19.90462 -17.72618 -16.87199 -16.64933 -16.39093 -15.94562 -15.71315 -15.39426 -15.31843 -14.50140 -14.41785 -14.19354 -13.79284 -13.76078 -13.44770 -13.02591 -12.66012 -12.30490 -12.26587 -12.14426 -12.01206 -11.84681 -11.61817 -11.42653 -11.20415 -11.01955 -10.89657 -10.74656 -10.63755 -9.89682 -9.88197 -9.40125 -9.15074 -8.84075 -8.78142 -8.38516 -8.20150 -6.03092 -4.06490 1.14522 1.33369 2.78081 3.08754 3.30734 3.30775 3.35697 3.37755 3.73721 4.40374 4.42959 4.61125 4.78110 4.84851 4.93559 4.95218 5.00387 5.08765 5.24163 5.27825 5.32456 5.36930 5.44333 5.49193 5.51361 5.67653 5.73867 5.76280 6.02864 6.14643 6.15386 6.32343 6.45249 6.47616 6.58061 6.64298 6.81827 6.98682 7.21662 7.61588 7.70356 7.74312 7.95374 8.35495 8.40869 8.99989 9.57660 11.08150 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033112 B = 0.002251 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.413137 B =12438.556183 C =12681.111075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.125 3.875 4 C -0.189 4.189 5 C -0.028 4.028 6 C -0.105 4.105 7 C 0.508 3.492 8 O -0.535 6.535 9 N -0.728 5.728 10 C 0.117 3.883 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.138 4.138 22 C -0.083 4.083 23 C -0.121 4.121 24 C -0.103 4.103 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.398 0.602 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 -17.293 18.891 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.080 3.920 4 C -0.207 4.207 5 C -0.029 4.029 6 C -0.145 4.145 7 C 0.293 3.707 8 O -0.411 6.411 9 N -0.379 5.379 10 C -0.006 4.006 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.156 4.156 22 C -0.101 4.101 23 C -0.122 4.122 24 C -0.159 4.159 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.143 0.857 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.232 0.768 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.310 -17.946 17.996 27.067 hybrid contribution -1.125 1.428 0.169 1.826 sum 8.186 -16.517 18.165 25.881 Atomic orbital electron populations 1.23057 0.78458 1.03826 1.01527 1.86030 1.21265 1.26853 1.88842 1.18736 0.91747 0.84033 0.97437 1.21008 0.99793 0.91764 1.08176 1.19032 0.93545 0.92946 0.97335 1.20720 1.01598 0.96672 0.95541 1.20442 0.78519 0.80884 0.90880 1.90736 1.50884 1.53382 1.46098 1.46224 1.54537 1.27036 1.10117 1.21635 1.00205 0.97873 0.80898 1.21884 0.97825 0.93781 1.02340 1.19026 0.97081 0.96314 0.88974 1.21163 1.33390 1.09329 0.92289 0.92697 1.25038 0.96244 0.97554 0.95661 1.69957 1.45999 1.40003 0.97307 0.86633 0.80672 0.83543 0.76985 1.20231 1.21262 1.20248 1.20875 0.93011 0.98547 1.03156 1.20808 0.99678 0.90962 0.98609 1.19233 0.90587 0.96209 1.06126 1.20583 0.98734 0.94631 1.01998 0.88301 0.92739 0.92470 0.85650 0.87792 0.88102 0.76827 0.91821 0.91876 0.92756 0.92723 0.96286 0.96307 0.92847 0.85967 0.85402 0.91615 0.91297 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.50 9.54 -19.42 -0.19 -3.69 16 3 C 0.13 1.51 6.66 -39.21 -0.26 1.25 16 4 C -0.19 -2.23 8.69 -39.43 -0.34 -2.57 16 5 C -0.03 -0.33 4.37 -104.64 -0.46 -0.79 16 6 C -0.11 -1.05 5.83 -29.03 -0.17 -1.22 16 7 C 0.51 7.29 7.82 -10.98 -0.09 7.21 16 8 O -0.53 -10.16 16.03 5.55 0.09 -10.07 16 9 N -0.73 -10.06 5.56 -60.29 -0.33 -10.39 16 10 C 0.12 2.05 5.67 -4.04 -0.02 2.02 16 11 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.14 -1.55 9.70 -39.56 -0.38 -1.94 16 22 C -0.08 -0.88 9.70 -39.61 -0.38 -1.26 16 23 C -0.12 -1.36 5.89 -104.47 -0.62 -1.98 16 24 C -0.10 -0.91 9.79 36.01 0.35 -0.56 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 27 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 28 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 29 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 43 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -34.32 363.21 -8.20 -42.52 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.89 Total: -0.11 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.07 Total: -14.03 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.40 Total: -36.50 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.10 Total: -13.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.32 -8.20 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349299411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.325 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds