Wall clock time and date at job start Tue Mar 31 2020 06:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35898 * 117.00181 * 2 1 4 4 C 1.38755 * 120.05483 * 0.30154 * 3 2 1 5 5 C 1.38125 * 119.94063 * 180.20827 * 4 3 2 6 6 C 1.50700 * 119.96773 * 179.79358 * 5 4 3 7 7 C 1.50702 * 109.46869 * 269.71965 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47273 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46983 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00145 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00161 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99703 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00027 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47140 * 60.00723 * 17 15 13 19 19 H 1.48510 * 109.46754 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47297 * 300.00159 * 17 15 13 21 21 C 1.38288 * 120.05856 * 359.51170 * 5 4 3 22 22 C 1.38242 * 120.10960 * 0.23860 * 21 5 4 23 23 C 1.38160 * 120.05911 * 359.97438 * 22 21 5 24 24 C 1.50700 * 120.03242 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.47490 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46876 * 299.99755 * 1 2 3 27 27 H 1.08998 * 109.47613 * 59.99683 * 1 2 3 28 28 H 1.07996 * 120.02735 * 359.97438 * 4 3 2 29 29 H 1.09004 * 109.47210 * 149.72258 * 6 5 4 30 30 H 1.08994 * 109.47551 * 29.71910 * 6 5 4 31 31 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 32 32 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 33 33 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 34 34 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 35 35 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 36 36 H 1.08992 * 109.47143 * 300.00104 * 12 11 10 37 37 H 1.08997 * 109.46799 * 60.00311 * 12 11 10 38 38 H 0.97003 * 120.00173 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.94236 * 180.25272 * 21 5 4 40 40 H 1.08003 * 119.96785 * 180.02562 * 22 21 5 41 41 H 1.08998 * 109.47430 * 89.99757 * 24 23 22 42 42 H 1.09002 * 109.47035 * 210.00501 * 24 23 22 43 43 H 1.08998 * 109.46411 * 329.99949 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9209 3.6047 0.0020 6 6 1.1020 4.8698 0.0041 7 6 0.8284 5.2934 -1.4160 8 8 1.2559 4.6329 -2.3390 9 7 0.1035 6.4031 -1.6604 10 6 -0.1675 6.8116 -3.0409 11 6 -1.0031 8.0933 -3.0389 12 6 -1.2856 8.5203 -4.4807 13 6 -2.1081 9.7830 -4.4786 14 1 -2.3998 10.2360 -3.5425 15 6 -2.4883 10.3602 -5.6716 16 7 -2.1335 9.8084 -6.8115 17 14 -3.5072 11.9258 -5.6690 18 1 -2.7585 13.0025 -4.9723 19 1 -3.7826 12.3395 -7.0684 20 1 -4.7910 11.6797 -4.9643 21 6 3.3020 3.6757 0.0015 22 6 4.0560 2.5170 0.0004 23 6 3.4312 1.2848 0.0003 24 6 4.2537 0.0221 -0.0002 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2128 2.3203 0.0108 29 1 1.6519 5.6577 0.5188 30 1 0.1577 4.6905 0.5180 31 1 -0.2386 6.9313 -0.9223 32 1 0.7748 6.9935 -3.5577 33 1 -0.7158 6.0208 -3.5529 34 1 -1.9454 7.9119 -2.5220 35 1 -0.4543 8.8839 -2.5271 36 1 -0.3431 8.7019 -4.9971 37 1 -1.8341 7.7298 -4.9928 38 1 -2.4013 10.2142 -7.6509 39 1 3.7923 4.6380 0.0022 40 1 5.1344 2.5752 0.0005 41 1 4.4524 -0.2827 1.0272 42 1 3.7061 -0.7680 -0.5142 43 1 5.1975 0.2036 -0.5144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349299411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:42 Heat of formation + Delta-G solvation = -98.607599 kcal Electronic energy + Delta-G solvation = -21993.479208 eV Core-core repulsion = 18616.047301 eV Total energy + Delta-G solvation = -3377.431907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40868 -40.52796 -38.43721 -36.94936 -35.18105 -34.71730 -33.07043 -31.10097 -30.75456 -28.57476 -28.37637 -26.27399 -24.70664 -23.19105 -22.31051 -22.24415 -21.15558 -18.67328 -18.41226 -17.93531 -17.45701 -16.78166 -16.67802 -16.66335 -16.47820 -16.33916 -15.56353 -15.11091 -14.82473 -14.70830 -14.36991 -14.20802 -13.89465 -13.71530 -13.64508 -13.29755 -12.92767 -12.85693 -12.73335 -12.61046 -12.55604 -12.41246 -12.19796 -11.96803 -11.77775 -11.67139 -11.58524 -11.26249 -10.86045 -10.55505 -10.08134 -9.66796 -9.01909 -8.19908 -6.31780 0.31366 0.50414 1.41483 1.44665 1.52515 1.66589 2.22609 2.38781 2.42583 2.83951 3.13676 3.59237 3.85257 3.97448 4.06250 4.19197 4.21204 4.23700 4.30144 4.33809 4.34836 4.54774 4.56657 4.64600 4.67866 4.70970 4.77908 4.84300 4.93850 4.94508 5.02530 5.16592 5.30094 5.36212 5.45008 5.52922 5.53363 5.62969 5.69768 5.83428 5.87806 6.21298 6.44156 6.62090 6.85913 7.30723 7.37980 8.92042 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033112 B = 0.002251 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.413137 B =12438.556183 C =12681.111075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.107 3.893 4 C -0.202 4.202 5 C -0.046 4.046 6 C -0.093 4.093 7 C 0.507 3.493 8 O -0.586 6.586 9 N -0.715 5.715 10 C 0.130 3.870 11 C -0.101 4.101 12 C 0.022 3.978 13 C -0.541 4.541 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.151 4.151 22 C -0.089 4.089 23 C -0.138 4.138 24 C -0.100 4.100 25 H 0.121 0.879 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.418 0.582 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.069 0.931 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.263 0.737 39 H 0.136 0.864 40 H 0.150 0.850 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.576 -16.434 21.298 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.062 3.938 4 C -0.221 4.221 5 C -0.046 4.046 6 C -0.132 4.132 7 C 0.295 3.705 8 O -0.466 6.466 9 N -0.368 5.368 10 C 0.006 3.994 11 C -0.138 4.138 12 C -0.015 4.015 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.189 1.189 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.169 4.169 22 C -0.107 4.107 23 C -0.138 4.138 24 C -0.156 4.156 25 H 0.139 0.861 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.255 0.745 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.072 0.928 39 H 0.154 0.846 40 H 0.168 0.832 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.929 -17.075 20.462 28.106 hybrid contribution -0.990 1.089 -0.596 1.588 sum 7.939 -15.986 19.866 26.706 Atomic orbital electron populations 1.23277 0.77001 1.05426 1.01739 1.86008 1.22866 1.26686 1.88846 1.19020 0.92405 0.84480 0.97929 1.21231 1.00443 0.91994 1.08386 1.19309 0.94104 0.93564 0.97649 1.20748 1.03321 0.96756 0.92421 1.21231 0.77116 0.79886 0.92303 1.90721 1.52856 1.54903 1.48163 1.45982 1.54449 1.27346 1.08975 1.21185 0.98713 0.96530 0.83002 1.21587 0.99063 0.94824 0.98368 1.18951 0.95018 0.95138 0.92419 1.21659 1.33341 1.10022 0.92899 0.91390 1.26057 0.97587 1.01373 0.95255 1.70112 1.47522 1.41935 0.98066 0.85450 0.79184 0.79024 0.77079 1.18937 1.21260 1.18952 1.21189 0.93238 0.99447 1.03033 1.21134 1.00929 0.90642 0.97967 1.19633 0.90865 0.97388 1.05942 1.20596 0.98812 0.93426 1.02790 0.86089 0.91496 0.93220 0.84755 0.84623 0.85157 0.74502 0.93598 0.93669 0.91235 0.91204 0.99133 0.99154 0.92820 0.84616 0.83208 0.90470 0.92137 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.25 9.54 -92.40 -0.88 -8.13 16 3 C 0.11 2.55 6.66 22.51 0.15 2.70 16 4 C -0.20 -4.63 8.69 22.37 0.19 -4.44 16 5 C -0.05 -1.01 4.37 -19.88 -0.09 -1.10 16 6 C -0.09 -1.61 5.83 29.10 0.17 -1.44 16 7 C 0.51 13.86 7.82 87.66 0.69 14.55 16 8 O -0.59 -22.41 16.03 -3.04 -0.05 -22.46 16 9 N -0.71 -18.48 5.56 -463.06 -2.57 -21.05 16 10 C 0.13 4.56 5.67 86.38 0.49 5.05 16 11 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 12 C 0.02 1.17 4.97 29.85 0.15 1.32 16 13 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 14 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 15 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 16 N -0.94 -57.39 13.29 21.45 0.28 -57.11 16 17 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 21 C -0.15 -3.21 9.70 22.28 0.22 -3.00 16 22 C -0.09 -1.80 9.70 22.25 0.22 -1.58 16 23 C -0.14 -3.03 5.89 -19.77 -0.12 -3.15 16 24 C -0.10 -1.69 9.79 71.24 0.70 -1.00 16 25 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.07 0.80 7.65 -2.39 -0.02 0.79 16 27 H 0.05 0.80 7.67 -2.39 -0.02 0.78 16 28 H 0.13 2.65 6.30 -2.91 -0.02 2.63 16 29 H 0.14 1.51 8.09 -2.38 -0.02 1.49 16 30 H 0.13 1.51 8.08 -2.39 -0.02 1.49 16 31 H 0.42 7.55 8.47 -92.71 -0.79 6.77 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.12 7.53 -2.39 -0.02 1.10 16 43 H 0.08 1.07 8.09 -2.39 -0.02 1.06 16 Total: -1.00 -76.28 363.21 3.75 -72.53 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.21 Total: 14.62 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 4.73 Total: -24.01 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.29 Total: -78.16 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.93 Total: -30.59 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -76.28 3.75 -72.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349299411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.078 kcal (2) G-P(sol) polarization free energy of solvation -76.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds