Wall clock time and date at job start Tue Mar 31 2020 06:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38290 * 119.94173 * 2 1 4 4 C 1.38131 * 120.04957 * 179.70090 * 3 2 1 5 5 C 1.38746 * 119.94707 * 0.59675 * 4 3 2 6 6 O 1.35900 * 120.05467 * 179.69741 * 5 4 3 7 7 C 1.42898 * 117.00172 * 359.72752 * 6 5 4 8 8 C 1.50703 * 109.47171 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99832 * 359.97438 * 10 8 7 12 12 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 13 13 H 1.08998 * 109.46997 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.47338 * 119.99594 * 12 10 8 15 15 C 1.50702 * 109.46937 * 239.99555 * 12 10 8 16 16 H 1.08002 * 120.00367 * 0.02562 * 15 12 10 17 17 C 1.37872 * 119.99824 * 179.97438 * 15 12 10 18 18 N 1.31519 * 120.00292 * 180.02562 * 17 15 12 19 19 Si 1.86809 * 120.00246 * 0.02562 * 17 15 12 20 20 H 1.48492 * 109.46980 * 89.99779 * 19 17 15 21 21 H 1.48501 * 109.46954 * 209.99709 * 19 17 15 22 22 H 1.48499 * 109.46848 * 329.99392 * 19 17 15 23 23 C 1.38711 * 119.88916 * 359.42782 * 5 4 3 24 24 C 1.50695 * 120.02780 * 180.29410 * 23 5 4 25 25 C 1.38162 * 119.94377 * 0.27488 * 23 5 4 26 26 H 1.09005 * 109.46662 * 269.97573 * 1 2 3 27 27 H 1.08992 * 109.47098 * 29.97609 * 1 2 3 28 28 H 1.09005 * 109.46990 * 149.97762 * 1 2 3 29 29 H 1.07993 * 119.97407 * 0.02562 * 3 2 1 30 30 H 1.08010 * 120.02317 * 180.32125 * 4 3 2 31 31 H 1.09002 * 109.47259 * 300.00149 * 7 6 5 32 32 H 1.09001 * 109.47074 * 60.00171 * 7 6 5 33 33 H 1.08999 * 109.47333 * 89.99805 * 11 10 8 34 34 H 1.08997 * 109.47024 * 210.00620 * 11 10 8 35 35 H 1.09000 * 109.46875 * 330.00379 * 11 10 8 36 36 H 1.09000 * 109.47283 * 180.02562 * 14 12 10 37 37 H 1.08993 * 109.47110 * 300.00190 * 14 12 10 38 38 H 1.08998 * 109.47006 * 60.00091 * 14 12 10 39 39 H 0.96993 * 120.00437 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47176 * 90.00310 * 24 23 5 41 41 H 1.09003 * 109.47462 * 209.99996 * 24 23 5 42 42 H 1.09002 * 109.47735 * 329.99823 * 24 23 5 43 43 H 1.08001 * 119.97675 * 179.97438 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2009 0.0062 5 6 4.2734 0.0001 0.0000 6 8 5.6324 0.0001 -0.0001 7 6 6.2812 1.2734 0.0004 8 6 7.7752 1.0759 0.0008 9 8 8.2388 -0.0448 0.0012 10 7 8.5962 2.1448 0.0018 11 6 8.0362 3.4986 0.0019 12 6 10.0486 1.9529 0.0017 13 1 10.2741 0.8865 0.0012 14 6 10.6487 2.6022 -1.2470 15 6 10.6396 2.5903 1.2328 16 1 9.9975 3.0882 1.9443 17 6 11.9998 2.5370 1.4512 18 7 12.5156 3.0929 2.5258 19 14 13.1104 1.6752 0.2209 20 1 13.5639 2.6496 -0.8037 21 1 14.2902 1.1144 0.9272 22 1 12.3599 0.5766 -0.4386 23 6 3.5788 -1.2006 -0.0005 24 6 4.3304 -2.5067 -0.0006 25 6 2.1971 -1.1979 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6559 2.1328 0.0004 30 1 4.1172 2.1371 0.0115 31 1 5.9882 1.8308 -0.8893 32 1 5.9884 1.8300 0.8906 33 1 7.8965 3.8339 1.0296 34 1 8.7201 4.1746 -0.5112 35 1 7.0753 3.4943 -0.5126 36 1 11.7293 2.4590 -1.2473 37 1 10.2213 2.1412 -2.1373 38 1 10.4232 3.6685 -1.2460 39 1 13.4726 3.0557 2.6793 40 1 4.5113 -2.8219 1.0271 41 1 3.7404 -3.2654 -0.5148 42 1 5.2832 -2.3777 -0.5141 43 1 1.6557 -2.1324 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349324835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:01 Heat of formation + Delta-G solvation = -44.557107 kcal Electronic energy + Delta-G solvation = -23064.371458 eV Core-core repulsion = 19689.283357 eV Total energy + Delta-G solvation = -3375.088102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47324 -39.21818 -37.54297 -35.54123 -33.35237 -32.85303 -31.70321 -30.79453 -28.25192 -27.28711 -26.37274 -25.99380 -25.13897 -22.64582 -21.15513 -20.74253 -18.52977 -18.19763 -17.04104 -16.43359 -16.23702 -15.91823 -15.47106 -15.04078 -14.67351 -14.36449 -14.23919 -13.77614 -13.36417 -13.28021 -13.21838 -12.96914 -12.70659 -12.44878 -12.43353 -12.27586 -12.03279 -11.90093 -11.83625 -11.66155 -11.40250 -11.20543 -10.90861 -10.83854 -10.72685 -10.18224 -9.68626 -9.41234 -9.11429 -8.92640 -8.67338 -8.03909 -7.84643 -6.18198 -4.19534 1.20973 1.31223 2.83944 3.08948 3.20898 3.35161 3.37659 3.59794 3.94780 4.32079 4.60762 4.66296 4.76076 4.83188 4.98100 5.11038 5.14424 5.15578 5.17039 5.32972 5.39533 5.50654 5.53455 5.57060 5.71880 5.73808 5.81620 5.87345 6.11886 6.17188 6.18979 6.23554 6.26751 6.38524 6.41595 6.47296 6.69623 6.78381 7.01835 7.22779 7.38392 7.56808 8.05478 8.40056 8.73959 8.83294 9.42198 10.94456 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032022 B = 0.003209 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.191922 B = 8723.129574 C = 9116.240462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.086 4.086 4 C -0.204 4.204 5 C 0.128 3.872 6 O -0.285 6.285 7 C 0.044 3.956 8 C 0.509 3.491 9 O -0.529 6.529 10 N -0.584 5.584 11 C 0.082 3.918 12 C 0.231 3.769 13 H 0.064 0.936 14 C -0.162 4.162 15 C -0.529 4.529 16 H 0.079 0.921 17 C 0.076 3.924 18 N -0.894 5.894 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.263 1.263 23 C -0.110 4.110 24 C -0.108 4.108 25 C -0.084 4.084 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.034 0.966 38 H 0.057 0.943 39 H 0.266 0.734 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.553 -2.475 -7.103 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.104 4.104 4 C -0.223 4.223 5 C 0.082 3.918 6 O -0.197 6.197 7 C -0.035 4.035 8 C 0.294 3.706 9 O -0.406 6.406 10 N -0.317 5.317 11 C -0.061 4.061 12 C 0.130 3.870 13 H 0.082 0.918 14 C -0.220 4.220 15 C -0.568 4.568 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.531 5.531 19 Si 0.712 3.288 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.187 1.187 23 C -0.111 4.111 24 C -0.164 4.164 25 C -0.103 4.103 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.972 -3.194 -6.995 22.337 hybrid contribution 0.680 0.226 -0.472 0.858 sum -20.292 -2.967 -7.467 21.825 Atomic orbital electron populations 1.20694 0.91223 1.02441 1.02018 1.19780 0.96051 0.93031 1.03966 1.20772 0.93205 0.97589 0.98853 1.21260 0.95420 0.97012 1.08581 1.18930 0.82446 0.93803 0.96657 1.86170 1.15648 1.29824 1.88048 1.22622 0.92534 0.85233 1.03127 1.19794 0.87036 0.85515 0.78251 1.90693 1.76937 1.23458 1.49484 1.47797 1.07925 1.04825 1.71153 1.21675 0.97827 0.84693 1.01943 1.19330 0.74630 0.98792 0.94289 0.91820 1.22465 1.00212 1.01266 0.98046 1.21136 0.93092 1.36908 1.05629 0.90292 1.24860 0.97829 0.94640 0.95346 1.69867 1.12746 1.44040 1.26479 0.86922 0.80361 0.80552 0.80933 1.20343 1.22052 1.18737 1.19282 0.93185 0.93689 1.04945 1.20638 1.00410 0.92819 1.02567 1.20735 0.92290 0.97748 0.99478 0.91546 0.91830 0.91822 0.85946 0.85344 0.89539 0.89285 0.92396 0.90299 0.92874 0.92983 0.94700 0.92431 0.92361 0.91253 0.91913 0.90566 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.13 -1.27 5.88 -104.60 -0.62 -1.89 16 3 C -0.09 -0.88 9.69 -39.60 -0.38 -1.26 16 4 C -0.20 -2.38 9.04 -39.43 -0.36 -2.74 16 5 C 0.13 1.79 6.66 -39.22 -0.26 1.53 16 6 O -0.28 -4.71 8.71 -39.34 -0.34 -5.06 16 7 C 0.04 0.65 3.77 36.01 0.14 0.78 16 8 C 0.51 10.22 7.75 -10.98 -0.09 10.14 16 9 O -0.53 -12.96 15.83 -14.35 -0.23 -13.18 16 10 N -0.58 -11.73 2.75 -175.26 -0.48 -12.21 16 11 C 0.08 1.25 9.48 59.85 0.57 1.82 16 12 C 0.23 5.52 2.23 -69.08 -0.15 5.36 16 13 H 0.06 1.71 5.96 -51.93 -0.31 1.40 16 14 C -0.16 -3.41 8.65 37.16 0.32 -3.09 16 15 C -0.53 -14.50 8.95 -34.44 -0.31 -14.81 16 16 H 0.08 2.32 7.89 -52.49 -0.41 1.90 16 17 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 18 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 19 Si 0.88 21.71 24.37 -169.99 -4.14 17.56 16 20 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 23 C -0.11 -1.41 5.89 -104.48 -0.62 -2.03 16 24 C -0.11 -1.29 9.79 36.00 0.35 -0.94 16 25 C -0.08 -0.90 9.35 -39.60 -0.37 -1.27 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.13 1.27 6.30 -52.48 -0.33 0.94 16 31 H 0.09 1.03 6.93 -51.93 -0.36 0.67 16 32 H 0.09 1.15 7.61 -51.93 -0.40 0.75 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.19 6.42 -51.93 -0.33 0.86 16 35 H 0.05 0.59 6.44 -51.93 -0.33 0.25 16 36 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 42 H 0.08 1.06 7.53 -51.93 -0.39 0.67 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -33.59 345.01 -7.09 -40.68 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.36 Total: -0.28 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.51 Total: -6.72 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.29 Total: -38.20 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.57 Total: -18.24 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.59 -7.09 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349324835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.876 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds