Wall clock time and date at job start Tue Mar 31 2020 06:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38290 * 119.94173 * 2 1 4 4 C 1.38131 * 120.04957 * 179.70090 * 3 2 1 5 5 C 1.38746 * 119.94707 * 0.59675 * 4 3 2 6 6 O 1.35900 * 120.05467 * 179.69741 * 5 4 3 7 7 C 1.42898 * 117.00172 * 359.72752 * 6 5 4 8 8 C 1.50703 * 109.47171 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99832 * 359.97438 * 10 8 7 12 12 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 13 13 H 1.08998 * 109.46997 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.47338 * 119.99594 * 12 10 8 15 15 C 1.50702 * 109.46937 * 239.99555 * 12 10 8 16 16 H 1.08002 * 120.00367 * 0.02562 * 15 12 10 17 17 C 1.37872 * 119.99824 * 179.97438 * 15 12 10 18 18 N 1.31519 * 120.00292 * 180.02562 * 17 15 12 19 19 Si 1.86809 * 120.00246 * 0.02562 * 17 15 12 20 20 H 1.48492 * 109.46980 * 89.99779 * 19 17 15 21 21 H 1.48501 * 109.46954 * 209.99709 * 19 17 15 22 22 H 1.48499 * 109.46848 * 329.99392 * 19 17 15 23 23 C 1.38711 * 119.88916 * 359.42782 * 5 4 3 24 24 C 1.50695 * 120.02780 * 180.29410 * 23 5 4 25 25 C 1.38162 * 119.94377 * 0.27488 * 23 5 4 26 26 H 1.09005 * 109.46662 * 269.97573 * 1 2 3 27 27 H 1.08992 * 109.47098 * 29.97609 * 1 2 3 28 28 H 1.09005 * 109.46990 * 149.97762 * 1 2 3 29 29 H 1.07993 * 119.97407 * 0.02562 * 3 2 1 30 30 H 1.08010 * 120.02317 * 180.32125 * 4 3 2 31 31 H 1.09002 * 109.47259 * 300.00149 * 7 6 5 32 32 H 1.09001 * 109.47074 * 60.00171 * 7 6 5 33 33 H 1.08999 * 109.47333 * 89.99805 * 11 10 8 34 34 H 1.08997 * 109.47024 * 210.00620 * 11 10 8 35 35 H 1.09000 * 109.46875 * 330.00379 * 11 10 8 36 36 H 1.09000 * 109.47283 * 180.02562 * 14 12 10 37 37 H 1.08993 * 109.47110 * 300.00190 * 14 12 10 38 38 H 1.08998 * 109.47006 * 60.00091 * 14 12 10 39 39 H 0.96993 * 120.00437 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47176 * 90.00310 * 24 23 5 41 41 H 1.09003 * 109.47462 * 209.99996 * 24 23 5 42 42 H 1.09002 * 109.47735 * 329.99823 * 24 23 5 43 43 H 1.08001 * 119.97675 * 179.97438 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2009 0.0062 5 6 4.2734 0.0001 0.0000 6 8 5.6324 0.0001 -0.0001 7 6 6.2812 1.2734 0.0004 8 6 7.7752 1.0759 0.0008 9 8 8.2388 -0.0448 0.0012 10 7 8.5962 2.1448 0.0018 11 6 8.0362 3.4986 0.0019 12 6 10.0486 1.9529 0.0017 13 1 10.2741 0.8865 0.0012 14 6 10.6487 2.6022 -1.2470 15 6 10.6396 2.5903 1.2328 16 1 9.9975 3.0882 1.9443 17 6 11.9998 2.5370 1.4512 18 7 12.5156 3.0929 2.5258 19 14 13.1104 1.6752 0.2209 20 1 13.5639 2.6496 -0.8037 21 1 14.2902 1.1144 0.9272 22 1 12.3599 0.5766 -0.4386 23 6 3.5788 -1.2006 -0.0005 24 6 4.3304 -2.5067 -0.0006 25 6 2.1971 -1.1979 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6559 2.1328 0.0004 30 1 4.1172 2.1371 0.0115 31 1 5.9882 1.8308 -0.8893 32 1 5.9884 1.8300 0.8906 33 1 7.8965 3.8339 1.0296 34 1 8.7201 4.1746 -0.5112 35 1 7.0753 3.4943 -0.5126 36 1 11.7293 2.4590 -1.2473 37 1 10.2213 2.1412 -2.1373 38 1 10.4232 3.6685 -1.2460 39 1 13.4726 3.0557 2.6793 40 1 4.5113 -2.8219 1.0271 41 1 3.7404 -3.2654 -0.5148 42 1 5.2832 -2.3777 -0.5141 43 1 1.6557 -2.1324 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349324835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:00 Heat of formation + Delta-G solvation = -65.346025 kcal Electronic energy + Delta-G solvation = -23065.272934 eV Core-core repulsion = 19689.283357 eV Total energy + Delta-G solvation = -3375.989577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55074 -40.60345 -38.59320 -37.25170 -34.86539 -34.16113 -32.66000 -32.43803 -29.47771 -28.11029 -27.75212 -27.16035 -26.80242 -23.84238 -22.56987 -21.60277 -20.09797 -19.26767 -18.90995 -17.77127 -17.62101 -17.40697 -16.86860 -16.23805 -15.81042 -15.65101 -15.23913 -14.99722 -14.74678 -14.62229 -14.13390 -14.09051 -14.00292 -13.88691 -13.74083 -13.57056 -13.32524 -13.13821 -13.08504 -12.72624 -12.70031 -12.58896 -12.20280 -12.07576 -11.76798 -11.75596 -11.59888 -11.38801 -10.82389 -10.74311 -9.74940 -9.50225 -8.92877 -8.37613 -6.42535 0.38756 0.45921 1.24117 1.34515 1.42804 1.53269 1.64241 2.25592 2.64749 2.76973 2.97688 3.45608 3.81133 3.90020 3.94144 4.05792 4.08220 4.34592 4.37128 4.39999 4.42580 4.54682 4.56948 4.58651 4.69584 4.73130 4.76768 4.81376 4.92883 4.94198 5.02784 5.06201 5.17866 5.28009 5.34834 5.39432 5.44536 5.51013 5.63869 5.70511 5.90084 6.15469 6.40508 6.57648 6.63355 7.14056 7.27667 8.78361 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032022 B = 0.003209 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.191922 B = 8723.129574 C = 9116.240462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.127 4.127 3 C -0.090 4.090 4 C -0.206 4.206 5 C 0.094 3.906 6 O -0.318 6.318 7 C 0.055 3.945 8 C 0.499 3.501 9 O -0.586 6.586 10 N -0.590 5.590 11 C 0.075 3.925 12 C 0.231 3.769 13 H 0.028 0.972 14 C -0.154 4.154 15 C -0.527 4.527 16 H 0.047 0.953 17 C 0.024 3.976 18 N -0.938 5.938 19 Si 0.940 3.060 20 H -0.250 1.250 21 H -0.296 1.296 22 H -0.264 1.264 23 C -0.132 4.132 24 C -0.104 4.104 25 C -0.088 4.088 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.269 0.731 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.302 -1.409 -8.895 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.225 4.225 5 C 0.049 3.951 6 O -0.232 6.232 7 C -0.022 4.022 8 C 0.286 3.714 9 O -0.467 6.467 10 N -0.321 5.321 11 C -0.066 4.066 12 C 0.128 3.872 13 H 0.046 0.954 14 C -0.212 4.212 15 C -0.566 4.566 16 H 0.066 0.934 17 C -0.175 4.175 18 N -0.578 5.578 19 Si 0.767 3.233 20 H -0.175 1.175 21 H -0.224 1.224 22 H -0.189 1.189 23 C -0.133 4.133 24 C -0.161 4.161 25 C -0.106 4.106 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.762 -2.082 -8.802 25.425 hybrid contribution 1.366 -0.109 0.164 1.380 sum -22.397 -2.191 -8.638 24.104 Atomic orbital electron populations 1.20758 0.88923 1.03661 1.02918 1.20221 0.97777 0.92657 1.02073 1.21161 0.92803 0.98948 0.97864 1.21513 0.96239 0.96780 1.07938 1.19230 0.81438 0.95288 0.99107 1.86115 1.17402 1.30627 1.89029 1.22560 0.88341 0.85485 1.05847 1.20756 0.89388 0.84504 0.76707 1.90657 1.78390 1.25679 1.51967 1.47851 1.06589 1.06987 1.70704 1.21986 1.00134 0.81942 1.02570 1.18999 0.77482 0.96527 0.94191 0.95360 1.22315 0.99372 1.02355 0.97141 1.21350 0.92881 1.35949 1.06410 0.93448 1.25632 0.99456 0.95374 0.97045 1.69992 1.13262 1.46013 1.28511 0.86001 0.78186 0.79896 0.79255 1.17524 1.22360 1.18923 1.19544 0.94312 0.93538 1.05895 1.20591 0.99508 0.93779 1.02234 1.21018 0.91428 0.99270 0.98911 0.90670 0.90521 0.90808 0.83216 0.83512 0.85747 0.87048 0.92831 0.90014 0.87750 0.93925 0.92425 0.90520 0.92188 0.91667 0.89558 0.93379 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.24 0.71 -0.37 16 2 C -0.13 -2.14 5.88 -19.85 -0.12 -2.25 16 3 C -0.09 -1.54 9.69 22.26 0.22 -1.32 16 4 C -0.21 -4.30 9.04 22.37 0.20 -4.09 16 5 C 0.09 2.57 6.66 22.50 0.15 2.72 16 6 O -0.32 -10.57 8.71 -73.39 -0.64 -11.21 16 7 C 0.06 1.57 3.77 71.24 0.27 1.84 16 8 C 0.50 20.08 7.75 87.66 0.68 20.76 16 9 O -0.59 -29.90 15.83 16.01 0.25 -29.65 16 10 N -0.59 -23.37 2.75 -826.79 -2.28 -25.64 16 11 C 0.08 2.12 9.48 127.77 1.21 3.33 16 12 C 0.23 11.12 2.23 44.25 0.10 11.22 16 13 H 0.03 1.57 5.96 -2.39 -0.01 1.55 16 14 C -0.15 -6.24 8.65 71.98 0.62 -5.61 16 15 C -0.53 -29.59 8.95 25.60 0.23 -29.36 16 16 H 0.05 2.88 7.89 -2.91 -0.02 2.86 16 17 C 0.02 1.38 5.45 84.65 0.46 1.84 16 18 N -0.94 -57.61 13.96 21.45 0.30 -57.31 16 19 Si 0.94 45.20 24.37 68.60 1.67 46.87 16 20 H -0.25 -10.90 6.87 99.48 0.68 -10.22 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.26 -12.69 6.53 99.48 0.65 -12.04 16 23 C -0.13 -3.32 5.89 -19.77 -0.12 -3.44 16 24 C -0.10 -2.57 9.79 71.23 0.70 -1.87 16 25 C -0.09 -1.71 9.35 22.25 0.21 -1.50 16 26 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 28 H 0.07 0.63 8.08 -2.38 -0.02 0.61 16 29 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 30 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 31 H 0.13 2.51 6.93 -2.39 -0.02 2.49 16 32 H 0.11 2.62 7.61 -2.39 -0.02 2.60 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 2.26 6.42 -2.39 -0.02 2.24 16 35 H 0.10 1.85 6.44 -2.39 -0.02 1.84 16 36 H 0.04 1.80 3.27 -2.39 -0.01 1.79 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 2.78 6.66 -2.39 -0.02 2.76 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.61 8.09 -2.39 -0.02 1.59 16 42 H 0.05 1.43 7.53 -2.39 -0.02 1.41 16 43 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -77.73 345.01 5.76 -71.98 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.92 Total: 13.09 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.52 Total: -8.12 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.98 Total: -82.95 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.39 Total: -40.86 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.67 Total: 46.87 kcal Total: -77.73 5.76 -71.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349324835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.630 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds