Wall clock time and date at job start Tue Mar 31 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99876 * 2 1 4 4 C 1.38753 * 120.05596 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94463 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05625 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94470 * 180.02562 * 6 5 4 8 8 C 1.38241 * 120.10796 * 0.04680 * 6 5 4 9 9 C 1.38160 * 120.05906 * 359.67369 * 8 6 5 10 10 C 1.50697 * 120.03040 * 180.29755 * 9 8 6 11 11 C 1.50702 * 109.47039 * 265.28158 * 10 9 8 12 12 O 1.21275 * 120.00152 * 0.02562 * 11 10 9 13 13 N 1.34790 * 119.99540 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00318 * 359.97438 * 13 11 10 15 15 C 1.46500 * 119.99303 * 180.02562 * 13 11 10 16 16 H 1.08997 * 109.47612 * 0.02562 * 15 13 11 17 17 C 1.52998 * 109.46768 * 120.00367 * 15 13 11 18 18 C 1.50700 * 109.46649 * 239.99760 * 15 13 11 19 19 H 1.07997 * 120.00482 * 0.02562 * 18 15 13 20 20 C 1.37881 * 119.99559 * 180.02562 * 18 15 13 21 21 N 1.31514 * 119.99904 * 180.02562 * 20 18 15 22 22 Si 1.86800 * 120.00131 * 359.97438 * 20 18 15 23 23 H 1.48499 * 109.47195 * 90.00565 * 22 20 18 24 24 H 1.48501 * 109.47258 * 210.00233 * 22 20 18 25 25 H 1.48499 * 109.47065 * 330.00037 * 22 20 18 26 26 H 1.09001 * 109.47103 * 60.00723 * 1 2 3 27 27 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00283 * 1 2 3 29 29 H 1.08004 * 120.02740 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.97321 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46921 * 89.99962 * 7 6 5 32 32 H 1.08995 * 109.47124 * 209.99534 * 7 6 5 33 33 H 1.09005 * 109.46958 * 330.00223 * 7 6 5 34 34 H 1.08001 * 119.96837 * 179.97438 * 8 6 5 35 35 H 1.08995 * 109.47030 * 25.28343 * 10 9 8 36 36 H 1.09007 * 109.47333 * 145.28381 * 10 9 8 37 37 H 1.09001 * 109.46778 * 89.99792 * 14 13 11 38 38 H 1.08994 * 109.47413 * 209.99827 * 14 13 11 39 39 H 1.09003 * 109.47136 * 330.00398 * 14 13 11 40 40 H 1.09001 * 109.47782 * 59.99393 * 17 15 13 41 41 H 1.09000 * 109.47074 * 179.97438 * 17 15 13 42 42 H 1.08999 * 109.47227 * 299.99436 * 17 15 13 43 43 H 0.97003 * 120.00548 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 6 4.0559 2.5171 -0.0004 9 6 3.4311 1.2849 0.0059 10 6 4.2537 0.0222 0.0128 11 6 4.4303 -0.4699 -1.4006 12 8 3.9372 0.1444 -2.3227 13 7 5.1372 -1.5923 -1.6399 14 6 5.7343 -2.3335 -0.5262 15 6 5.3094 -2.0704 -3.0140 16 1 4.7999 -1.3943 -3.7005 17 6 6.8001 -2.1151 -3.3553 18 6 4.7231 -3.4528 -3.1419 19 1 4.2675 -3.9276 -2.2855 20 6 4.7684 -4.1115 -4.3524 21 7 4.2564 -5.3177 -4.4642 22 14 5.5558 -3.2900 -5.8338 23 1 7.0010 -3.6286 -5.8776 24 1 4.8971 -3.7709 -7.0748 25 1 5.3953 -1.8176 -5.7269 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2128 2.3203 -0.0005 30 1 1.3339 4.5114 -0.0019 31 1 4.1506 5.3425 1.0271 32 1 4.9442 4.9382 -0.5139 33 1 3.3581 5.7463 -0.5148 34 1 5.1344 2.5753 -0.0004 35 1 5.2305 0.2274 0.4508 36 1 3.7441 -0.7403 0.6020 37 1 5.0245 -3.0763 -0.1621 38 1 6.6408 -2.8336 -0.8670 39 1 5.9817 -1.6420 0.2792 40 1 7.3101 -2.7910 -2.6689 41 1 6.9282 -2.4712 -4.3775 42 1 7.2242 -1.1153 -3.2628 43 1 4.2885 -5.7813 -5.3156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349325522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:15 Heat of formation + Delta-G solvation = -43.369508 kcal Electronic energy + Delta-G solvation = -23745.793164 eV Core-core repulsion = 20370.756561 eV Total energy + Delta-G solvation = -3375.036604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32748 -38.88706 -37.53998 -35.44179 -33.23216 -32.56653 -31.54872 -30.41413 -27.82160 -27.53540 -26.13802 -25.77883 -25.03877 -22.35765 -21.46236 -20.31561 -18.27656 -17.78588 -16.93222 -16.42359 -16.13032 -15.64627 -15.34526 -15.09832 -14.52584 -14.30661 -14.09925 -13.75439 -13.64641 -13.17595 -12.97939 -12.70701 -12.50904 -12.20269 -12.16293 -12.06226 -11.95063 -11.72679 -11.67772 -11.50912 -11.24189 -10.98377 -10.77733 -10.69092 -10.62725 -10.08912 -9.60780 -9.29744 -9.05253 -8.64887 -8.59060 -7.85849 -7.62086 -6.10185 -4.09877 1.40976 1.53017 3.26055 3.39611 3.41182 3.43141 3.43333 3.70540 4.08207 4.39273 4.75201 4.83940 4.92043 5.07538 5.20043 5.21593 5.29005 5.31041 5.33640 5.45407 5.54931 5.56732 5.61240 5.68789 5.76879 5.82331 5.90647 6.05468 6.16559 6.26501 6.31912 6.37735 6.38838 6.49468 6.55511 6.66561 6.89039 6.89654 7.19550 7.44179 7.52744 7.69754 8.28050 8.55221 8.91358 9.04748 9.51591 11.02745 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.004431 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.556843 B = 6317.099042 C = 6791.396986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.141 3.859 4 C -0.207 4.207 5 C -0.085 4.085 6 C -0.128 4.128 7 C -0.106 4.106 8 C -0.071 4.071 9 C -0.085 4.085 10 C -0.094 4.094 11 C 0.512 3.488 12 O -0.546 6.546 13 N -0.591 5.591 14 C 0.087 3.913 15 C 0.229 3.771 16 H 0.061 0.939 17 C -0.161 4.161 18 C -0.524 4.524 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.897 5.897 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.264 1.264 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.032 0.968 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 15.552 13.035 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.095 3.905 4 C -0.225 4.225 5 C -0.104 4.104 6 C -0.129 4.129 7 C -0.163 4.163 8 C -0.089 4.089 9 C -0.086 4.086 10 C -0.133 4.133 11 C 0.299 3.701 12 O -0.424 6.424 13 N -0.322 5.322 14 C -0.057 4.057 15 C 0.127 3.873 16 H 0.079 0.921 17 C -0.219 4.219 18 C -0.562 4.562 19 H 0.096 0.904 20 C -0.128 4.128 21 N -0.535 5.535 22 Si 0.713 3.287 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.188 1.188 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.041 15.499 12.412 19.961 hybrid contribution 0.122 0.169 -0.878 0.902 sum -1.920 15.669 11.534 19.551 Atomic orbital electron populations 1.23032 0.78664 1.04004 1.00866 1.86132 1.21103 1.26632 1.88234 1.18783 0.91727 0.84307 0.95652 1.21125 0.99745 0.92305 1.09349 1.20715 0.93885 0.96756 0.98995 1.19701 0.93614 0.95265 1.04290 1.20678 1.00304 0.93526 1.01741 1.20681 0.99474 0.90547 0.98174 1.18709 0.90362 0.94761 1.04762 1.20543 1.00361 0.95887 0.96556 1.20249 0.78623 0.80852 0.90342 1.90641 1.48695 1.57149 1.45950 1.47842 1.51490 1.24123 1.08771 1.21587 0.99099 0.96225 0.88750 1.19250 0.92214 0.96517 0.79274 0.92097 1.22456 0.99481 0.99157 1.00782 1.21183 1.38369 0.98516 0.98127 0.90379 1.24865 0.94954 0.94601 0.98364 1.69878 1.45428 1.12472 1.25696 0.86924 0.78825 0.80675 0.82309 1.20429 1.22202 1.18847 0.92716 0.88212 0.93039 0.85673 0.86205 0.91714 0.91749 0.91938 0.85690 0.88720 0.88048 0.92845 0.90922 0.92733 0.92557 0.93248 0.94858 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.01 9.63 -19.43 -0.19 -5.20 16 3 C 0.14 2.25 6.66 -39.22 -0.26 1.98 16 4 C -0.21 -2.77 9.04 -39.44 -0.36 -3.13 16 5 C -0.09 -1.05 9.69 -39.61 -0.38 -1.43 16 6 C -0.13 -1.61 5.88 -104.60 -0.62 -2.23 16 7 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 8 C -0.07 -0.99 9.33 -39.61 -0.37 -1.36 16 9 C -0.08 -1.35 4.39 -104.48 -0.46 -1.81 16 10 C -0.09 -1.48 4.11 -29.03 -0.12 -1.60 16 11 C 0.51 10.75 7.67 -10.98 -0.08 10.67 16 12 O -0.55 -13.68 15.36 5.56 0.09 -13.60 16 13 N -0.59 -12.59 2.75 -175.27 -0.48 -13.07 16 14 C 0.09 1.46 9.49 59.84 0.57 2.02 16 15 C 0.23 5.73 2.23 -69.08 -0.15 5.57 16 16 H 0.06 1.70 5.96 -51.93 -0.31 1.40 16 17 C -0.16 -3.55 8.65 37.16 0.32 -3.22 16 18 C -0.52 -14.86 8.95 -34.44 -0.31 -15.17 16 19 H 0.08 2.38 7.89 -52.49 -0.41 1.97 16 20 C 0.07 2.17 5.45 -17.82 -0.10 2.07 16 21 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 22 Si 0.88 22.36 24.37 -169.99 -4.14 18.22 16 23 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.26 -6.65 6.53 56.52 0.37 -6.28 16 26 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.13 1.38 6.30 -52.48 -0.33 1.05 16 30 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.09 1.18 7.31 -51.93 -0.38 0.80 16 36 H 0.10 1.53 7.66 -51.93 -0.40 1.13 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.19 6.42 -51.93 -0.33 0.86 16 39 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 40 H 0.06 1.14 6.66 -51.93 -0.35 0.80 16 41 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -35.25 344.33 -6.10 -41.35 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.37 Total: 0.70 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.97 Total: -6.92 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.29 Total: -39.75 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.10 Total: -18.80 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.25 -6.10 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349325522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.017 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds