Wall clock time and date at job start Tue Mar 31 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99876 * 2 1 4 4 C 1.38753 * 120.05596 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94463 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05625 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94470 * 180.02562 * 6 5 4 8 8 C 1.38241 * 120.10796 * 0.04680 * 6 5 4 9 9 C 1.38160 * 120.05906 * 359.67369 * 8 6 5 10 10 C 1.50697 * 120.03040 * 180.29755 * 9 8 6 11 11 C 1.50702 * 109.47039 * 265.28158 * 10 9 8 12 12 O 1.21275 * 120.00152 * 0.02562 * 11 10 9 13 13 N 1.34790 * 119.99540 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00318 * 359.97438 * 13 11 10 15 15 C 1.46500 * 119.99303 * 180.02562 * 13 11 10 16 16 H 1.08997 * 109.47612 * 0.02562 * 15 13 11 17 17 C 1.52998 * 109.46768 * 120.00367 * 15 13 11 18 18 C 1.50700 * 109.46649 * 239.99760 * 15 13 11 19 19 H 1.07997 * 120.00482 * 0.02562 * 18 15 13 20 20 C 1.37881 * 119.99559 * 180.02562 * 18 15 13 21 21 N 1.31514 * 119.99904 * 180.02562 * 20 18 15 22 22 Si 1.86800 * 120.00131 * 359.97438 * 20 18 15 23 23 H 1.48499 * 109.47195 * 90.00565 * 22 20 18 24 24 H 1.48501 * 109.47258 * 210.00233 * 22 20 18 25 25 H 1.48499 * 109.47065 * 330.00037 * 22 20 18 26 26 H 1.09001 * 109.47103 * 60.00723 * 1 2 3 27 27 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00283 * 1 2 3 29 29 H 1.08004 * 120.02740 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.97321 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46921 * 89.99962 * 7 6 5 32 32 H 1.08995 * 109.47124 * 209.99534 * 7 6 5 33 33 H 1.09005 * 109.46958 * 330.00223 * 7 6 5 34 34 H 1.08001 * 119.96837 * 179.97438 * 8 6 5 35 35 H 1.08995 * 109.47030 * 25.28343 * 10 9 8 36 36 H 1.09007 * 109.47333 * 145.28381 * 10 9 8 37 37 H 1.09001 * 109.46778 * 89.99792 * 14 13 11 38 38 H 1.08994 * 109.47413 * 209.99827 * 14 13 11 39 39 H 1.09003 * 109.47136 * 330.00398 * 14 13 11 40 40 H 1.09001 * 109.47782 * 59.99393 * 17 15 13 41 41 H 1.09000 * 109.47074 * 179.97438 * 17 15 13 42 42 H 1.08999 * 109.47227 * 299.99436 * 17 15 13 43 43 H 0.97003 * 120.00548 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 6 4.0559 2.5171 -0.0004 9 6 3.4311 1.2849 0.0059 10 6 4.2537 0.0222 0.0128 11 6 4.4303 -0.4699 -1.4006 12 8 3.9372 0.1444 -2.3227 13 7 5.1372 -1.5923 -1.6399 14 6 5.7343 -2.3335 -0.5262 15 6 5.3094 -2.0704 -3.0140 16 1 4.7999 -1.3943 -3.7005 17 6 6.8001 -2.1151 -3.3553 18 6 4.7231 -3.4528 -3.1419 19 1 4.2675 -3.9276 -2.2855 20 6 4.7684 -4.1115 -4.3524 21 7 4.2564 -5.3177 -4.4642 22 14 5.5558 -3.2900 -5.8338 23 1 7.0010 -3.6286 -5.8776 24 1 4.8971 -3.7709 -7.0748 25 1 5.3953 -1.8176 -5.7269 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2128 2.3203 -0.0005 30 1 1.3339 4.5114 -0.0019 31 1 4.1506 5.3425 1.0271 32 1 4.9442 4.9382 -0.5139 33 1 3.3581 5.7463 -0.5148 34 1 5.1344 2.5753 -0.0004 35 1 5.2305 0.2274 0.4508 36 1 3.7441 -0.7403 0.6020 37 1 5.0245 -3.0763 -0.1621 38 1 6.6408 -2.8336 -0.8670 39 1 5.9817 -1.6420 0.2792 40 1 7.3101 -2.7910 -2.6689 41 1 6.9282 -2.4712 -4.3775 42 1 7.2242 -1.1153 -3.2628 43 1 4.2885 -5.7813 -5.3156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349325522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:15 Heat of formation + Delta-G solvation = -66.802815 kcal Electronic energy + Delta-G solvation = -23746.809309 eV Core-core repulsion = 20370.756561 eV Total energy + Delta-G solvation = -3376.052748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47373 -40.42239 -38.56636 -37.22462 -34.85664 -34.17091 -32.57720 -32.16511 -28.81741 -28.67114 -27.64036 -27.11944 -26.68134 -23.73734 -22.71606 -21.59703 -19.85535 -18.95467 -18.85461 -17.90970 -17.48029 -17.26895 -16.62036 -16.48710 -15.87155 -15.72433 -15.22784 -14.98279 -14.74775 -14.59700 -14.39985 -14.14636 -14.06581 -13.85562 -13.53676 -13.26692 -13.11922 -13.00487 -12.94733 -12.77984 -12.63059 -12.54365 -12.19904 -12.05254 -11.73153 -11.67711 -11.57999 -11.35012 -10.80592 -10.68574 -9.75742 -9.35900 -8.88847 -8.35966 -6.40047 0.37987 0.51501 1.23855 1.33699 1.42804 1.82399 2.26565 2.33233 2.43478 2.85818 2.99230 3.70290 3.86430 3.92194 4.03210 4.19503 4.32492 4.34743 4.41731 4.42272 4.46160 4.47789 4.57638 4.60560 4.63693 4.66218 4.74217 4.80705 4.81349 4.92566 4.98444 5.08993 5.14327 5.23519 5.33939 5.39849 5.48133 5.50756 5.70442 5.75507 5.94580 6.21426 6.50141 6.61613 6.78654 7.22104 7.43961 8.80389 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.004431 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.556843 B = 6317.099042 C = 6791.396986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.341 6.341 3 C 0.112 3.888 4 C -0.213 4.213 5 C -0.088 4.088 6 C -0.133 4.133 7 C -0.104 4.104 8 C -0.081 4.081 9 C -0.114 4.114 10 C -0.079 4.079 11 C 0.505 3.495 12 O -0.595 6.595 13 N -0.599 5.599 14 C 0.083 3.917 15 C 0.231 3.769 16 H 0.026 0.974 17 C -0.152 4.152 18 C -0.525 4.525 19 H 0.042 0.958 20 C 0.022 3.978 21 N -0.940 5.940 22 Si 0.942 3.058 23 H -0.250 1.250 24 H -0.295 1.295 25 H -0.266 1.266 26 H 0.053 0.947 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.057 0.943 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 17.947 14.067 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.255 6.255 3 C 0.067 3.933 4 C -0.232 4.232 5 C -0.106 4.106 6 C -0.133 4.133 7 C -0.160 4.160 8 C -0.099 4.099 9 C -0.116 4.116 10 C -0.119 4.119 11 C 0.294 3.706 12 O -0.477 6.477 13 N -0.330 5.330 14 C -0.059 4.059 15 C 0.128 3.872 16 H 0.044 0.956 17 C -0.210 4.210 18 C -0.564 4.564 19 H 0.060 0.940 20 C -0.176 4.176 21 N -0.580 5.580 22 Si 0.769 3.231 23 H -0.175 1.175 24 H -0.222 1.222 25 H -0.191 1.191 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.123 0.877 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.666 17.888 13.489 22.414 hybrid contribution -0.421 -0.551 -1.117 1.315 sum -1.087 17.338 12.371 21.327 Atomic orbital electron populations 1.23250 0.76940 1.04946 1.02074 1.86065 1.23173 1.27576 1.88659 1.19135 0.92327 0.84881 0.96992 1.21431 1.00798 0.92109 1.08815 1.21143 0.94317 0.97407 0.97717 1.20146 0.93975 0.96330 1.02837 1.20733 1.00289 0.91873 1.03120 1.20980 1.00529 0.90426 0.98005 1.18939 0.90722 0.95386 1.06503 1.20495 1.02532 0.96101 0.92744 1.21199 0.77172 0.80104 0.92105 1.90602 1.50444 1.58619 1.47988 1.47948 1.51937 1.24669 1.08430 1.21838 0.98550 0.96957 0.88580 1.18923 0.93719 0.93342 0.81266 0.95639 1.22299 0.97069 1.01074 1.00576 1.21380 1.37949 0.99991 0.97034 0.93995 1.25652 0.95606 0.95058 1.01304 1.70006 1.47190 1.14090 1.26686 0.85963 0.79355 0.79297 0.78459 1.17533 1.22247 1.19090 0.92787 0.87530 0.90444 0.83819 0.83251 0.89907 0.91492 0.90743 0.84111 0.84942 0.87650 0.93887 0.90525 0.87910 0.90855 0.94084 0.92444 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.34 -11.31 9.63 -92.44 -0.89 -12.20 16 3 C 0.11 3.55 6.66 22.51 0.15 3.70 16 4 C -0.21 -5.48 9.04 22.36 0.20 -5.28 16 5 C -0.09 -1.96 9.69 22.25 0.22 -1.75 16 6 C -0.13 -3.02 5.88 -19.85 -0.12 -3.14 16 7 C -0.10 -1.60 10.01 71.24 0.71 -0.89 16 8 C -0.08 -2.14 9.33 22.25 0.21 -1.93 16 9 C -0.11 -3.56 4.39 -19.77 -0.09 -3.65 16 10 C -0.08 -2.41 4.11 29.10 0.12 -2.29 16 11 C 0.50 21.19 7.67 87.66 0.67 21.86 16 12 O -0.60 -30.55 15.36 -3.01 -0.05 -30.59 16 13 N -0.60 -25.39 2.75 -826.80 -2.28 -27.67 16 14 C 0.08 2.65 9.49 127.77 1.21 3.86 16 15 C 0.23 11.61 2.23 44.24 0.10 11.71 16 16 H 0.03 1.47 5.96 -2.39 -0.01 1.45 16 17 C -0.15 -6.45 8.65 71.98 0.62 -5.83 16 18 C -0.53 -30.65 8.95 25.60 0.23 -30.42 16 19 H 0.04 2.68 7.89 -2.91 -0.02 2.66 16 20 C 0.02 1.32 5.45 84.66 0.46 1.78 16 21 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 22 Si 0.94 46.41 24.37 68.60 1.67 48.08 16 23 H -0.25 -11.18 6.87 99.48 0.68 -10.49 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.27 -13.11 6.53 99.48 0.65 -12.46 16 26 H 0.05 1.22 7.66 -2.39 -0.02 1.20 16 27 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.08 1.34 7.66 -2.39 -0.02 1.33 16 29 H 0.14 2.96 6.30 -2.91 -0.02 2.94 16 30 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.07 0.98 8.08 -2.38 -0.02 0.96 16 34 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.13 2.90 7.31 -2.39 -0.02 2.88 16 36 H 0.11 3.10 7.66 -2.38 -0.02 3.08 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 2.38 6.42 -2.39 -0.02 2.36 16 39 H 0.10 2.27 6.44 -2.39 -0.02 2.25 16 40 H 0.07 2.82 6.66 -2.39 -0.02 2.80 16 41 H 0.04 1.80 3.27 -2.39 -0.01 1.79 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -80.09 344.33 5.49 -74.60 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.92 Total: 17.10 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 5.81 Total: -10.64 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -1.98 Total: -86.35 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.94 Total: -42.79 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.67 Total: 48.08 kcal Total: -80.09 5.49 -74.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349325522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.797 kcal (2) G-P(sol) polarization free energy of solvation -80.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds