Wall clock time and date at job start Tue Mar 31 2020 06:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38163 * 120.02715 * 2 1 4 4 C 1.38243 * 120.05438 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.11362 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05159 * 0.02562 * 5 4 3 7 7 C 1.38708 * 120.02785 * 179.97438 * 2 1 3 8 8 O 1.35899 * 120.05461 * 359.97438 * 7 2 1 9 9 C 1.42903 * 116.99930 * 180.02562 * 8 7 2 10 10 C 1.53002 * 109.47006 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46786 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47111 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00180 * 180.02562 * 12 11 10 14 14 O 1.21276 * 120.00184 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99956 * 180.02562 * 13 12 11 16 16 C 1.53008 * 109.47222 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47218 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99882 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00035 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99906 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00173 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47276 * 60.00140 * 21 19 17 23 23 H 1.48504 * 109.47245 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46857 * 299.99938 * 21 19 17 25 25 H 1.08998 * 109.47128 * 270.02582 * 1 2 3 26 26 H 1.08999 * 109.46873 * 30.02607 * 1 2 3 27 27 H 1.09000 * 109.47139 * 150.02308 * 1 2 3 28 28 H 1.08001 * 119.97024 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.94070 * 180.02562 * 4 3 2 30 30 H 1.07993 * 119.96940 * 180.28495 * 5 4 3 31 31 H 1.08000 * 120.02364 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47294 * 300.00489 * 9 8 7 33 33 H 1.08995 * 109.47056 * 60.00501 * 9 8 7 34 34 H 1.08993 * 109.47487 * 299.99875 * 10 9 8 35 35 H 1.09003 * 109.46669 * 60.00618 * 10 9 8 36 36 H 1.08998 * 109.47491 * 300.00452 * 11 10 9 37 37 H 1.09003 * 109.46925 * 60.00881 * 11 10 9 38 38 H 0.97003 * 119.99433 * 0.02562 * 12 11 10 39 39 H 1.09007 * 109.46823 * 299.99358 * 15 13 12 40 40 H 1.08998 * 109.47727 * 59.99624 * 15 13 12 41 41 H 1.08993 * 109.46603 * 299.99575 * 16 15 13 42 42 H 1.08998 * 109.46923 * 59.99320 * 16 15 13 43 43 H 0.96996 * 119.99637 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0009 0.0016 6 6 3.5887 -1.1976 0.0016 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0016 9 6 2.3034 -3.5762 0.0027 10 6 1.3732 -4.7909 0.0031 11 6 2.2084 -6.0728 0.0036 12 7 1.3177 -7.2360 0.0034 13 6 1.8346 -8.4806 0.0043 14 8 3.0372 -8.6378 0.0048 15 6 0.9184 -9.6770 0.0035 16 6 1.7536 -10.9591 0.0041 17 6 0.8373 -12.1555 0.0040 18 1 -0.2336 -12.0155 0.0031 19 6 1.3661 -13.4288 0.0039 20 7 2.6702 -13.5992 0.0045 21 14 0.2304 -14.9119 0.0030 22 1 -0.6257 -14.8790 -1.2099 23 1 1.0410 -16.1562 0.0038 24 1 -0.6269 -14.8795 1.2152 25 1 -0.3633 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6584 2.1315 -0.0004 29 1 4.1195 2.1330 0.0010 30 1 5.3552 0.0042 0.0067 31 1 4.1314 -2.1313 0.0029 32 1 2.9324 -3.6009 -0.8872 33 1 2.9322 -3.5993 0.8927 34 1 0.7440 -4.7664 0.8928 35 1 0.7447 -4.7675 -0.8872 36 1 2.8373 -6.0971 -0.8863 37 1 2.8371 -6.0965 0.8937 38 1 0.3559 -7.1102 0.0026 39 1 0.2886 -9.6529 0.8929 40 1 0.2905 -9.6534 -0.8871 41 1 2.3830 -10.9830 -0.8853 42 1 2.3818 -10.9830 0.8946 43 1 3.0422 -14.4950 0.0049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360149062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:14 Heat of formation + Delta-G solvation = -99.670673 kcal Electronic energy + Delta-G solvation = -21421.101745 eV Core-core repulsion = 18043.623739 eV Total energy + Delta-G solvation = -3377.478005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.21329 -40.66589 -38.58045 -36.57122 -35.53712 -33.86398 -33.31731 -32.55232 -30.81531 -28.27046 -27.62461 -26.54864 -23.99906 -23.06918 -22.68588 -22.06485 -21.03771 -19.04805 -18.78537 -17.46990 -17.44149 -17.16460 -16.73522 -16.59285 -16.49617 -16.29849 -15.47864 -15.30248 -14.80245 -14.49772 -14.41087 -14.10255 -14.01588 -13.98698 -13.26502 -13.16021 -13.11246 -13.08995 -12.77220 -12.57546 -12.49920 -12.49684 -12.21400 -11.90011 -11.68832 -11.65137 -11.63263 -11.31841 -10.76264 -10.55672 -10.09424 -9.77344 -9.07741 -8.17372 -6.31540 0.37165 0.48926 1.42664 1.47216 1.54917 1.71069 1.92078 2.40798 2.53459 2.81060 3.15470 3.79023 3.84855 3.86663 3.90490 4.04615 4.13230 4.21167 4.30137 4.35179 4.42041 4.47611 4.52138 4.57614 4.62481 4.69959 4.79579 4.84009 4.97900 5.00455 5.03939 5.13212 5.32943 5.41355 5.44054 5.51987 5.53266 5.60839 5.64102 5.86140 5.88827 6.18232 6.43088 6.60768 6.86950 7.34325 7.38871 8.95062 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.049887 B = 0.001872 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.129867 B =14952.288786 C =15471.762924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.137 4.137 3 C -0.090 4.090 4 C -0.160 4.160 5 C -0.096 4.096 6 C -0.219 4.219 7 C 0.107 3.893 8 O -0.322 6.322 9 C 0.062 3.938 10 C -0.113 4.113 11 C 0.122 3.878 12 N -0.718 5.718 13 C 0.511 3.489 14 O -0.590 6.590 15 C -0.120 4.120 16 C 0.040 3.960 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.288 1.288 24 H -0.262 1.262 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.418 0.582 39 H 0.106 0.894 40 H 0.106 0.894 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 32.579 -0.007 32.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.138 4.138 3 C -0.108 4.108 4 C -0.178 4.178 5 C -0.114 4.114 6 C -0.238 4.238 7 C 0.062 3.938 8 O -0.236 6.236 9 C -0.014 4.014 10 C -0.151 4.151 11 C -0.002 4.002 12 N -0.372 5.372 13 C 0.299 3.701 14 O -0.470 6.470 15 C -0.160 4.160 16 C 0.003 3.997 17 C -0.582 4.582 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.214 1.214 24 H -0.187 1.187 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.152 0.848 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.256 0.744 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.000 1.000 42 H 0.000 1.000 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.220 32.316 -0.007 32.591 hybrid contribution 0.092 -1.131 0.008 1.134 sum -4.128 31.186 0.000 31.458 Atomic orbital electron populations 1.20617 0.89645 1.03110 1.02592 1.19640 0.97545 0.90630 1.05938 1.21229 0.94559 0.97245 0.97764 1.21401 0.94440 0.98904 1.03056 1.21268 1.00965 0.91797 0.97367 1.21507 0.93000 1.00524 1.08756 1.19094 0.90972 0.85852 0.97879 1.85980 1.36337 1.12539 1.88744 1.22695 0.94141 0.82063 1.02484 1.21507 0.98290 0.89884 1.05397 1.21123 0.92972 0.84103 1.01981 1.45831 1.11294 1.04412 1.75700 1.21336 0.89055 0.85540 0.74133 1.90657 1.18262 1.86934 1.51162 1.21645 0.98165 0.91164 1.04984 1.18702 0.94363 0.91959 0.94704 1.21704 0.94039 0.91634 1.50860 0.90522 1.26154 0.96668 1.03066 0.94649 1.70175 1.13100 1.23069 1.51429 0.85359 0.78242 0.77077 0.79463 1.18691 1.21390 1.18701 0.91103 0.90134 0.92038 0.83245 0.83706 0.84092 0.84790 0.91168 0.91148 0.89090 0.89099 0.92207 0.92201 0.74422 0.87621 0.87624 0.99954 0.99957 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.79 71.24 0.70 -0.70 16 2 C -0.14 -2.32 5.89 -19.77 -0.12 -2.43 16 3 C -0.09 -1.22 9.70 22.25 0.22 -1.00 16 4 C -0.16 -2.06 10.04 22.28 0.22 -1.84 16 5 C -0.10 -1.39 10.04 22.25 0.22 -1.17 16 6 C -0.22 -3.78 9.04 22.36 0.20 -3.58 16 7 C 0.11 2.06 6.66 22.50 0.15 2.21 16 8 O -0.32 -6.17 9.18 -92.41 -0.85 -7.02 16 9 C 0.06 0.97 4.74 71.98 0.34 1.31 16 10 C -0.11 -1.69 5.70 30.60 0.17 -1.52 16 11 C 0.12 2.68 5.67 86.38 0.49 3.17 16 12 N -0.72 -18.25 5.56 -463.06 -2.57 -20.83 16 13 C 0.51 19.43 7.83 87.66 0.69 20.12 16 14 O -0.59 -28.88 15.98 -3.02 -0.05 -28.93 16 15 C -0.12 -4.75 5.64 29.85 0.17 -4.58 16 16 C 0.04 2.26 4.26 29.85 0.13 2.38 16 17 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 18 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 19 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 20 N -0.94 -59.76 13.29 21.45 0.28 -59.47 16 21 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 27 H 0.06 0.94 7.53 -2.39 -0.02 0.92 16 28 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 30 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.13 2.02 6.30 -2.91 -0.02 2.00 16 32 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 33 H 0.07 1.04 7.66 -2.39 -0.02 1.03 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.42 7.44 8.47 -92.71 -0.79 6.65 16 39 H 0.11 3.64 8.14 -2.38 -0.02 3.62 16 40 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 41 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 42 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 43 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -79.01 363.57 3.33 -75.69 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.20 Total: 12.65 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 4.28 Total: -18.44 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.29 Total: -80.30 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.90 Total: -35.94 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -79.01 3.33 -75.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360149062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.984 kcal (2) G-P(sol) polarization free energy of solvation -79.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds