Wall clock time and date at job start Tue Mar 31 2020 06:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38547 * 119.84969 * 2 1 4 4 C 1.38054 * 120.39089 * 180.30484 * 3 2 1 5 5 C 1.38711 * 120.08011 * 359.43991 * 4 3 2 6 6 O 1.35658 * 120.14749 * 180.30076 * 5 4 3 7 7 C 1.40135 * 119.70244 * 0.27732 * 5 4 3 8 8 C 1.47539 * 120.19056 * 180.02562 * 7 5 4 9 9 O 1.21588 * 120.00126 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99629 * 180.02562 * 8 7 5 11 11 C 1.46503 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47226 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47592 * 300.00334 * 12 11 10 14 14 C 1.52998 * 109.47358 * 60.00698 * 12 11 10 15 15 C 1.53005 * 109.47179 * 180.02562 * 12 11 10 16 16 C 1.50694 * 109.47246 * 179.97438 * 15 12 11 17 17 H 1.08005 * 120.00121 * 0.02562 * 16 15 12 18 18 C 1.37881 * 120.00213 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00296 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47046 * 89.99894 * 20 18 16 22 22 H 1.48495 * 109.47271 * 210.00225 * 20 18 16 23 23 H 1.48506 * 109.47300 * 330.00233 * 20 18 16 24 24 C 1.37792 * 119.85090 * 179.74339 * 2 1 3 25 25 H 1.09001 * 109.47266 * 270.25360 * 1 2 3 26 26 H 1.08999 * 109.47091 * 30.25388 * 1 2 3 27 27 H 1.09000 * 109.47090 * 150.25344 * 1 2 3 28 28 H 1.08001 * 119.80549 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.96228 * 179.72404 * 4 3 2 30 30 H 0.96702 * 113.99905 * 90.00282 * 6 5 4 31 31 H 0.97003 * 120.00431 * 0.02562 * 10 8 7 32 32 H 1.08998 * 109.47277 * 300.00619 * 11 10 8 33 33 H 1.08999 * 109.46842 * 60.00322 * 11 10 8 34 34 H 1.09001 * 109.46852 * 59.99406 * 13 12 11 35 35 H 1.08998 * 109.47448 * 180.02562 * 13 12 11 36 36 H 1.09006 * 109.46439 * 300.00304 * 13 12 11 37 37 H 1.08992 * 109.47390 * 59.99258 * 14 12 11 38 38 H 1.09000 * 109.47399 * 180.02562 * 14 12 11 39 39 H 1.09009 * 109.46488 * 299.99894 * 14 12 11 40 40 H 1.08998 * 109.47198 * 300.00531 * 15 12 11 41 41 H 1.08999 * 109.46968 * 60.00263 * 15 12 11 42 42 H 0.97001 * 119.99994 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.04449 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.2017 0.0000 4 6 3.5770 1.2147 -0.0063 5 6 4.2836 0.0211 -0.0010 6 8 5.6401 0.0323 -0.0011 7 6 3.5898 -1.1965 0.0049 8 6 4.3305 -2.4725 0.0112 9 8 5.5464 -2.4696 0.0116 10 7 3.6593 -3.6412 0.0163 11 6 4.3948 -4.9082 0.0220 12 6 3.4033 -6.0734 0.0265 13 6 2.5228 -5.9892 1.2749 14 6 2.5241 -5.9998 -1.2235 15 6 4.1713 -7.3966 0.0330 16 6 3.1948 -8.5443 0.0381 17 1 2.1324 -8.3495 0.0363 18 6 3.6573 -9.8432 0.0449 19 7 2.8051 -10.8448 0.0488 20 14 5.4947 -10.1802 0.0486 21 1 5.9799 -10.2627 1.4497 22 1 5.7636 -11.4655 -0.6449 23 1 6.2012 -9.0803 -0.6559 24 6 2.1928 -1.1951 0.0054 25 1 -0.3634 0.0045 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6509 2.1337 0.0004 29 1 4.1075 2.1554 -0.0108 30 1 6.0334 0.0395 0.8823 31 1 2.6893 -3.6435 0.0155 32 1 5.0217 -4.9684 -0.8677 33 1 5.0215 -4.9605 0.9122 34 1 1.9757 -5.0464 1.2707 35 1 1.8168 -6.8195 1.2783 36 1 3.1493 -6.0416 2.1654 37 1 3.1512 -6.0597 -2.1129 38 1 1.8174 -6.8296 -1.2201 39 1 1.9769 -5.0570 -1.2278 40 1 4.7989 -7.4569 -0.8562 41 1 4.7974 -7.4489 0.9237 42 1 3.1306 -11.7585 0.0532 43 1 1.6511 -2.1294 0.0091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360421448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:01 Heat of formation + Delta-G solvation = -72.936819 kcal Electronic energy + Delta-G solvation = -23164.872293 eV Core-core repulsion = 19788.553554 eV Total energy + Delta-G solvation = -3376.318738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58998 -38.87972 -37.29127 -36.93846 -33.71150 -32.30448 -32.04199 -31.31718 -27.84134 -26.61982 -26.57806 -26.39067 -24.05856 -22.59734 -21.66797 -20.23919 -18.86275 -18.11525 -17.18352 -16.82159 -16.27449 -15.77779 -15.17371 -15.04668 -14.84685 -14.26622 -14.12341 -13.81839 -13.63315 -13.59636 -13.33842 -12.93122 -12.71258 -12.37799 -12.29708 -12.17055 -11.95130 -11.78003 -11.25676 -11.14033 -11.02094 -10.88304 -10.62742 -10.49747 -9.98344 -9.86463 -9.73842 -9.43306 -9.34085 -9.00342 -8.84106 -8.66955 -8.53998 -6.04874 -4.02173 0.58849 0.94241 2.80385 3.31188 3.31870 3.39674 3.43983 3.56731 4.02522 4.44598 4.45442 4.49517 4.59127 4.93412 5.04258 5.21200 5.27788 5.29695 5.36853 5.39415 5.51769 5.55556 5.63206 5.71458 5.83566 6.01405 6.08748 6.10627 6.16783 6.20771 6.29918 6.44452 6.46765 6.57806 6.67784 6.88877 6.99950 7.03416 7.19325 7.35938 7.54339 7.65654 7.78838 8.35825 8.52211 8.98973 9.57919 11.07828 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025767 B = 0.003433 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.410251 B = 8154.242155 C = 9036.444771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.104 4.104 3 C -0.082 4.082 4 C -0.154 4.154 5 C 0.160 3.840 6 O -0.478 6.478 7 C -0.156 4.156 8 C 0.550 3.450 9 O -0.528 6.528 10 N -0.717 5.717 11 C 0.126 3.874 12 C -0.064 4.064 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.002 4.002 16 C -0.511 4.511 17 H 0.078 0.922 18 C 0.067 3.933 19 N -0.904 5.904 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 C -0.073 4.073 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.394 0.606 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.262 0.738 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 24.417 1.566 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.101 4.101 4 C -0.172 4.172 5 C 0.113 3.887 6 O -0.288 6.288 7 C -0.160 4.160 8 C 0.337 3.663 9 O -0.405 6.405 10 N -0.370 5.370 11 C 0.004 3.996 12 C -0.064 4.064 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.040 4.040 16 C -0.549 4.549 17 H 0.096 0.904 18 C -0.134 4.134 19 N -0.543 5.543 20 Si 0.702 3.298 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.091 4.091 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.252 0.748 31 H 0.234 0.766 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.957 24.179 0.960 24.378 hybrid contribution 0.608 -0.382 0.493 0.872 sum -2.348 23.796 1.454 23.956 Atomic orbital electron populations 1.20804 0.90464 1.03197 1.02660 1.19865 0.96610 0.92690 1.01278 1.21082 0.93529 0.97841 0.97619 1.21427 0.94509 0.97777 1.03502 1.18493 0.83732 0.90657 0.95778 1.84752 1.14653 1.96049 1.33386 1.20522 0.93961 0.93940 1.07544 1.18052 0.87368 0.83466 0.77442 1.90795 1.13045 1.87441 1.49236 1.46104 1.10496 1.05890 1.74485 1.21656 0.94737 0.81383 1.01864 1.20700 0.95211 0.94723 0.95761 1.21782 0.99773 1.00196 0.96857 1.21777 0.99773 1.00200 0.96866 1.19588 0.96005 0.91797 0.96565 1.21076 0.94386 0.88982 1.50458 0.90394 1.24995 0.97364 0.96346 0.94706 1.69899 1.34121 0.98957 1.51325 0.86860 0.86622 0.77785 0.78523 1.20370 1.21496 1.18967 1.21173 0.92357 0.98364 0.97246 0.90905 0.91346 0.91114 0.85254 0.84793 0.74811 0.76622 0.91692 0.91712 0.95135 0.90794 0.93352 0.93314 0.90797 0.95133 0.96323 0.96790 0.92788 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.00 36.00 0.36 -0.32 16 2 C -0.10 -0.88 5.87 -104.67 -0.61 -1.50 16 3 C -0.08 -0.65 9.68 -39.53 -0.38 -1.03 16 4 C -0.15 -1.40 9.98 -39.47 -0.39 -1.80 16 5 C 0.16 1.91 6.72 -38.70 -0.26 1.65 16 6 O -0.48 -6.02 11.58 -40.55 -0.47 -6.49 16 7 C -0.16 -1.98 5.89 -104.85 -0.62 -2.60 16 8 C 0.55 8.58 7.76 -12.47 -0.10 8.49 16 9 O -0.53 -9.98 15.16 -16.59 -0.25 -10.23 16 10 N -0.72 -10.45 4.91 -61.35 -0.30 -10.75 16 11 C 0.13 2.16 4.56 -4.04 -0.02 2.14 16 12 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 13 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 14 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 15 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 16 C -0.51 -13.63 8.20 -34.44 -0.28 -13.91 16 17 H 0.08 2.19 5.92 -52.48 -0.31 1.88 16 18 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 19 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 20 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 24 C -0.07 -0.74 9.18 -39.20 -0.36 -1.09 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 29 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.39 3.43 9.06 45.56 0.41 3.85 16 31 H 0.40 4.91 4.19 -40.82 -0.17 4.74 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 35 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 39 H 0.03 0.43 6.86 -51.92 -0.36 0.07 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 43 H 0.13 1.12 6.40 -52.49 -0.34 0.79 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -33.05 345.49 -7.58 -40.63 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.54 Total: 4.56 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -2.34 Total: -13.39 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.47 Total: -37.14 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.72 Total: -16.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.05 -7.58 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.302 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds