Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38547 * 119.84969 * 2 1 4 4 C 1.38054 * 120.39089 * 180.30484 * 3 2 1 5 5 C 1.38711 * 120.08011 * 359.43991 * 4 3 2 6 6 O 1.35658 * 120.14749 * 180.30076 * 5 4 3 7 7 C 1.40135 * 119.70244 * 0.27732 * 5 4 3 8 8 C 1.47539 * 120.19056 * 180.02562 * 7 5 4 9 9 O 1.21588 * 120.00126 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99629 * 180.02562 * 8 7 5 11 11 C 1.46503 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47226 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47592 * 300.00334 * 12 11 10 14 14 C 1.52998 * 109.47358 * 60.00698 * 12 11 10 15 15 C 1.53005 * 109.47179 * 180.02562 * 12 11 10 16 16 C 1.50694 * 109.47246 * 179.97438 * 15 12 11 17 17 H 1.08005 * 120.00121 * 0.02562 * 16 15 12 18 18 C 1.37881 * 120.00213 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00296 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47046 * 89.99894 * 20 18 16 22 22 H 1.48495 * 109.47271 * 210.00225 * 20 18 16 23 23 H 1.48506 * 109.47300 * 330.00233 * 20 18 16 24 24 C 1.37792 * 119.85090 * 179.74339 * 2 1 3 25 25 H 1.09001 * 109.47266 * 270.25360 * 1 2 3 26 26 H 1.08999 * 109.47091 * 30.25388 * 1 2 3 27 27 H 1.09000 * 109.47090 * 150.25344 * 1 2 3 28 28 H 1.08001 * 119.80549 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.96228 * 179.72404 * 4 3 2 30 30 H 0.96702 * 113.99905 * 90.00282 * 6 5 4 31 31 H 0.97003 * 120.00431 * 0.02562 * 10 8 7 32 32 H 1.08998 * 109.47277 * 300.00619 * 11 10 8 33 33 H 1.08999 * 109.46842 * 60.00322 * 11 10 8 34 34 H 1.09001 * 109.46852 * 59.99406 * 13 12 11 35 35 H 1.08998 * 109.47448 * 180.02562 * 13 12 11 36 36 H 1.09006 * 109.46439 * 300.00304 * 13 12 11 37 37 H 1.08992 * 109.47390 * 59.99258 * 14 12 11 38 38 H 1.09000 * 109.47399 * 180.02562 * 14 12 11 39 39 H 1.09009 * 109.46488 * 299.99894 * 14 12 11 40 40 H 1.08998 * 109.47198 * 300.00531 * 15 12 11 41 41 H 1.08999 * 109.46968 * 60.00263 * 15 12 11 42 42 H 0.97001 * 119.99994 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.04449 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.2017 0.0000 4 6 3.5770 1.2147 -0.0063 5 6 4.2836 0.0211 -0.0010 6 8 5.6401 0.0323 -0.0011 7 6 3.5898 -1.1965 0.0049 8 6 4.3305 -2.4725 0.0112 9 8 5.5464 -2.4696 0.0116 10 7 3.6593 -3.6412 0.0163 11 6 4.3948 -4.9082 0.0220 12 6 3.4033 -6.0734 0.0265 13 6 2.5228 -5.9892 1.2749 14 6 2.5241 -5.9998 -1.2235 15 6 4.1713 -7.3966 0.0330 16 6 3.1948 -8.5443 0.0381 17 1 2.1324 -8.3495 0.0363 18 6 3.6573 -9.8432 0.0449 19 7 2.8051 -10.8448 0.0488 20 14 5.4947 -10.1802 0.0486 21 1 5.9799 -10.2627 1.4497 22 1 5.7636 -11.4655 -0.6449 23 1 6.2012 -9.0803 -0.6559 24 6 2.1928 -1.1951 0.0054 25 1 -0.3634 0.0045 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6509 2.1337 0.0004 29 1 4.1075 2.1554 -0.0108 30 1 6.0334 0.0395 0.8823 31 1 2.6893 -3.6435 0.0155 32 1 5.0217 -4.9684 -0.8677 33 1 5.0215 -4.9605 0.9122 34 1 1.9757 -5.0464 1.2707 35 1 1.8168 -6.8195 1.2783 36 1 3.1493 -6.0416 2.1654 37 1 3.1512 -6.0597 -2.1129 38 1 1.8174 -6.8296 -1.2201 39 1 1.9769 -5.0570 -1.2278 40 1 4.7989 -7.4569 -0.8562 41 1 4.7974 -7.4489 0.9237 42 1 3.1306 -11.7585 0.0532 43 1 1.6511 -2.1294 0.0091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360421448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -94.334331 kcal Electronic energy + Delta-G solvation = -23165.800158 eV Core-core repulsion = 19788.553554 eV Total energy + Delta-G solvation = -3377.246604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55187 -39.98100 -38.56486 -37.90659 -35.23998 -34.09873 -32.75929 -32.22502 -29.72129 -28.01156 -27.72727 -27.21284 -25.18269 -24.09791 -22.61490 -21.37808 -20.01841 -19.27544 -18.90317 -18.19972 -17.26782 -16.68042 -16.42328 -16.22823 -16.03860 -15.66958 -15.25675 -15.22196 -14.82920 -14.54481 -14.36274 -14.21912 -14.10710 -13.88364 -13.49249 -12.95791 -12.89308 -12.80317 -12.65006 -12.54901 -12.42888 -12.32064 -12.18455 -11.78718 -11.74194 -11.53920 -11.29270 -10.94855 -10.76791 -10.71057 -10.22336 -9.95388 -9.43244 -8.23080 -6.23051 -0.22246 0.24311 1.35025 1.38172 1.48058 1.84372 2.15322 2.38453 2.70368 3.12411 3.27232 3.64500 3.77665 3.92633 3.95304 4.03063 4.13089 4.32233 4.33684 4.59281 4.62209 4.67766 4.75556 4.78732 4.91977 4.92440 4.92764 4.99774 5.07343 5.13849 5.27357 5.29664 5.30764 5.32980 5.39083 5.44114 5.53469 5.54872 5.67325 5.75178 5.81507 6.37135 6.52648 6.80355 6.83582 7.19849 7.39762 8.92417 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025767 B = 0.003433 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.410251 B = 8154.242155 C = 9036.444771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.104 4.104 3 C -0.072 4.072 4 C -0.153 4.153 5 C 0.139 3.861 6 O -0.499 6.499 7 C -0.182 4.182 8 C 0.549 3.451 9 O -0.569 6.569 10 N -0.707 5.707 11 C 0.139 3.861 12 C -0.058 4.058 13 C -0.124 4.124 14 C -0.124 4.124 15 C -0.003 4.003 16 C -0.502 4.502 17 H 0.054 0.946 18 C 0.007 3.993 19 N -0.950 5.950 20 Si 0.932 3.068 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.254 1.254 24 C -0.076 4.076 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.164 0.836 29 H 0.154 0.846 30 H 0.405 0.595 31 H 0.409 0.591 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.263 0.737 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 27.361 1.680 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.090 4.090 4 C -0.171 4.171 5 C 0.093 3.907 6 O -0.311 6.311 7 C -0.186 4.186 8 C 0.337 3.663 9 O -0.450 6.450 10 N -0.360 5.360 11 C 0.015 3.985 12 C -0.059 4.059 13 C -0.181 4.181 14 C -0.182 4.182 15 C -0.041 4.041 16 C -0.540 4.540 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.592 5.592 20 Si 0.758 3.242 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.178 1.178 24 C -0.095 4.095 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.181 0.819 29 H 0.171 0.829 30 H 0.264 0.736 31 H 0.248 0.752 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.840 27.144 1.081 27.435 hybrid contribution 0.765 -1.185 0.463 1.485 sum -3.075 25.959 1.545 26.186 Atomic orbital electron populations 1.20875 0.88409 1.04199 1.03594 1.20216 0.98056 0.92203 0.99908 1.21523 0.93088 0.99120 0.95231 1.21657 0.95219 0.97460 1.02804 1.18821 0.83541 0.91532 0.96843 1.84705 1.15588 1.96178 1.34670 1.20394 0.94993 0.92541 1.10641 1.18545 0.87074 0.84426 0.76209 1.90765 1.14918 1.88067 1.51246 1.45903 1.10930 1.04881 1.74324 1.21308 0.94200 0.81994 1.01009 1.20563 0.95328 0.92991 0.96985 1.21709 0.99208 1.01169 0.96020 1.21711 0.99223 1.01172 0.96067 1.19561 0.95497 0.92924 0.96115 1.21358 0.94183 0.90119 1.48323 0.92775 1.25804 1.01606 0.96448 0.95059 1.70032 1.36142 0.99388 1.53614 0.85921 0.81638 0.77799 0.78864 1.19653 1.21429 1.17768 1.21353 0.91273 0.99849 0.96981 0.89890 0.89728 0.90844 0.81896 0.82859 0.73614 0.75182 0.92900 0.92437 0.91403 0.93282 0.93578 0.93806 0.93226 0.91456 0.96839 0.96824 0.92836 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.00 71.23 0.71 -0.18 16 2 C -0.10 -1.38 5.87 -19.90 -0.12 -1.50 16 3 C -0.07 -0.85 9.68 22.30 0.22 -0.63 16 4 C -0.15 -2.40 9.98 22.34 0.22 -2.18 16 5 C 0.14 3.17 6.72 22.84 0.15 3.32 16 6 O -0.50 -12.58 11.58 -68.81 -0.80 -13.37 16 7 C -0.18 -4.41 5.89 -20.01 -0.12 -4.53 16 8 C 0.55 16.82 7.76 86.70 0.67 17.49 16 9 O -0.57 -21.79 15.16 16.93 0.26 -21.53 16 10 N -0.71 -19.61 4.91 -466.28 -2.29 -21.90 16 11 C 0.14 4.63 4.56 86.38 0.39 5.02 16 12 C -0.06 -2.09 0.54 -52.18 -0.03 -2.12 16 13 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 14 C -0.12 -4.19 8.05 71.98 0.58 -3.61 16 15 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 16 C -0.50 -27.23 8.20 25.60 0.21 -27.02 16 17 H 0.05 3.14 5.92 -2.91 -0.02 3.13 16 18 C 0.01 0.41 5.47 84.66 0.46 0.88 16 19 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 20 Si 0.93 44.67 27.47 68.60 1.88 46.55 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 23 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 24 C -0.08 -1.34 9.18 22.52 0.21 -1.14 16 25 H 0.08 0.52 8.14 -2.39 -0.02 0.51 16 26 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 27 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 28 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 29 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 30 H 0.40 7.25 9.06 -74.06 -0.67 6.58 16 31 H 0.41 9.08 4.19 -92.71 -0.39 8.69 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 35 H 0.05 1.87 6.62 -2.39 -0.02 1.86 16 36 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 39 H 0.07 1.74 6.86 -2.38 -0.02 1.72 16 40 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 41 H 0.01 0.61 7.57 -2.39 -0.02 0.60 16 42 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.14 2.02 6.40 -2.91 -0.02 2.00 16 Total: -1.00 -73.45 345.49 3.51 -69.94 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.08 Total: 18.32 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 4.24 Total: -19.76 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -1.99 Total: -80.13 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.54 Total: -34.91 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -73.45 3.51 -69.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.398 kcal (2) G-P(sol) polarization free energy of solvation -73.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds