Wall clock time and date at job start Tue Mar 31 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 120.00095 * 2 1 4 4 C 1.38234 * 120.00294 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99810 * 359.96333 * 4 3 2 6 6 C 1.50696 * 119.99848 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47334 * 89.99979 * 6 5 4 8 8 H 1.08995 * 109.47536 * 54.99704 * 7 6 5 9 9 C 1.53000 * 109.47680 * 174.99858 * 7 6 5 10 10 O 1.42904 * 109.46842 * 54.99481 * 9 7 6 11 11 N 1.46506 * 109.47011 * 294.99626 * 7 6 5 12 12 C 1.34773 * 119.99968 * 154.99680 * 11 7 6 13 13 O 1.21283 * 120.00360 * 359.73034 * 12 11 7 14 14 C 1.50706 * 120.00081 * 180.02562 * 12 11 7 15 15 C 1.52998 * 109.47348 * 179.72561 * 14 12 11 16 16 C 1.50696 * 109.46969 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00408 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99883 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99875 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99961 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46983 * 89.99938 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00008 * 20 18 16 23 23 H 1.48505 * 109.47256 * 330.00013 * 20 18 16 24 24 C 1.38236 * 120.00085 * 0.26613 * 5 4 3 25 25 C 1.38231 * 120.00148 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46962 * 90.00044 * 1 2 3 27 27 H 1.08996 * 109.47249 * 209.99746 * 1 2 3 28 28 H 1.09001 * 109.47262 * 330.00527 * 1 2 3 29 29 H 1.08004 * 119.99614 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00354 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47401 * 329.99317 * 6 5 4 32 32 H 1.09007 * 109.47069 * 209.99740 * 6 5 4 33 33 H 1.08995 * 109.47594 * 174.99234 * 9 7 6 34 34 H 1.08995 * 109.47216 * 295.00222 * 9 7 6 35 35 H 0.96703 * 114.00222 * 180.02562 * 10 9 7 36 36 H 0.96998 * 119.99507 * 335.00535 * 11 7 6 37 37 H 1.09001 * 109.46564 * 299.73030 * 14 12 11 38 38 H 1.08998 * 109.47012 * 59.72084 * 14 12 11 39 39 H 1.09000 * 109.46986 * 300.00089 * 15 14 12 40 40 H 1.09002 * 109.46857 * 60.00224 * 15 14 12 41 41 H 0.96999 * 119.99804 * 180.02562 * 19 18 16 42 42 H 1.07994 * 120.00235 * 179.72796 * 24 5 4 43 43 H 1.07998 * 119.99908 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0018 6 6 5.7787 0.0001 0.0018 7 6 6.2887 0.0017 1.4443 8 1 5.8541 -0.8394 1.9843 9 6 7.8135 -0.1240 1.4463 10 8 8.3780 0.9129 0.6411 11 7 5.9012 1.2543 2.0979 12 6 5.7743 1.3036 3.4387 13 8 5.9762 0.3097 4.1039 14 6 5.3751 2.5919 4.1110 15 6 5.2972 2.3751 5.6236 16 6 4.8987 3.6636 6.2958 17 1 4.7185 4.5485 5.7035 18 6 4.7640 3.7127 7.6672 19 7 4.4157 4.8371 8.2538 20 14 5.0763 2.1824 8.6918 21 1 6.5080 2.1323 9.0830 22 1 4.2308 2.2225 9.9119 23 1 4.7384 0.9757 7.8949 24 6 3.5806 -1.1971 -0.0030 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6581 2.1325 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 6.1420 0.8895 -0.5131 32 1 6.1420 -0.8905 -0.5110 33 1 8.1842 -0.0336 2.4673 34 1 8.0986 -1.0947 1.0408 35 1 9.3438 0.8945 0.5964 36 1 5.7358 2.0481 1.5655 37 1 6.1160 3.3608 3.8918 38 1 4.4011 2.9094 3.7388 39 1 4.5564 1.6062 5.8427 40 1 6.2713 2.0577 5.9957 41 1 4.3213 4.8717 9.2186 42 1 4.1205 -2.1324 -0.0064 43 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360464058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:19 Heat of formation + Delta-G solvation = -87.412977 kcal Electronic energy + Delta-G solvation = -23019.193356 eV Core-core repulsion = 19642.246884 eV Total energy + Delta-G solvation = -3376.946472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99404 -39.06939 -37.23620 -35.13988 -33.43433 -33.13533 -31.40472 -30.99696 -30.30907 -27.92492 -25.96065 -24.85369 -22.83097 -22.08656 -20.94687 -20.42349 -19.61766 -17.67403 -17.10989 -16.43844 -15.94031 -15.80903 -15.35193 -15.30118 -14.92258 -14.28293 -14.09473 -14.05082 -13.80228 -13.49843 -13.18993 -12.90499 -12.75526 -12.55316 -12.52333 -12.26363 -11.96265 -11.75147 -11.37460 -11.33402 -11.00617 -10.99119 -10.91600 -10.17492 -10.11248 -9.99946 -9.75315 -9.18236 -9.11167 -8.99334 -8.80146 -8.51531 -8.47651 -6.00284 -3.98508 1.25404 1.35205 3.19147 3.39491 3.45730 3.50603 3.57466 3.65443 4.18382 4.53447 4.56163 4.69071 4.80187 4.89530 4.93804 5.05311 5.19203 5.26048 5.33487 5.35350 5.39381 5.43634 5.45135 5.59070 5.64166 5.71623 5.72193 5.93663 6.02668 6.07556 6.15481 6.16481 6.34705 6.51960 6.53860 6.73523 6.77041 6.95328 7.40546 7.46774 7.48288 7.81334 7.89307 8.53997 8.73547 9.03354 9.63062 11.12680 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.004296 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.551310 B = 6515.993353 C = 7943.308764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.116 4.116 4 C -0.106 4.106 5 C -0.085 4.085 6 C -0.081 4.081 7 C 0.154 3.846 8 H 0.098 0.902 9 C 0.063 3.937 10 O -0.569 6.569 11 N -0.725 5.725 12 C 0.512 3.488 13 O -0.546 6.546 14 C -0.122 4.122 15 C 0.003 3.997 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.114 4.114 25 C -0.120 4.120 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.377 0.623 36 H 0.399 0.601 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.263 0.737 42 H 0.119 0.881 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 -11.460 -22.388 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.085 4.085 6 C -0.119 4.119 7 C 0.049 3.951 8 H 0.116 0.884 9 C -0.016 4.016 10 O -0.374 6.374 11 N -0.378 5.378 12 C 0.301 3.699 13 O -0.423 6.423 14 C -0.162 4.162 15 C -0.035 4.035 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.543 5.543 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.186 1.186 24 C -0.132 4.132 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.223 0.777 36 H 0.233 0.767 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.291 -11.956 -21.790 24.856 hybrid contribution 0.705 -0.502 0.524 1.012 sum 0.415 -12.458 -21.266 24.650 Atomic orbital electron populations 1.20788 0.91360 1.02924 1.02037 1.19914 0.96044 0.93279 0.99940 1.21047 0.94242 0.97585 1.00548 1.21003 0.94125 0.97472 0.99785 1.19809 0.95337 0.93313 1.00087 1.20778 0.90970 1.04184 0.95984 1.20931 0.91878 0.89461 0.92859 0.88437 1.22681 0.94336 0.89813 0.94793 1.86449 1.25171 1.53695 1.72048 1.46091 1.71727 1.12644 1.07374 1.21503 0.75308 0.91789 0.81304 1.90633 1.50235 1.37342 1.64079 1.21651 1.02190 0.92941 0.99410 1.19350 0.97423 0.97626 0.89116 1.21129 1.46784 0.95895 0.92322 0.90958 1.24966 0.94427 0.95902 0.97921 1.69915 1.48411 1.25926 1.10090 0.86802 0.78428 0.84636 0.79726 1.20275 1.21463 1.18552 1.20996 0.94182 0.97468 1.00602 1.20986 0.94171 0.97458 1.01162 0.91402 0.91648 0.91419 0.86045 0.86176 0.89551 0.89964 0.92706 0.93183 0.77686 0.76691 0.89725 0.89734 0.95905 0.96381 0.92765 0.86286 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.09 -1.00 5.88 -104.63 -0.62 -1.61 16 3 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 4 C -0.11 -1.17 9.10 -39.58 -0.36 -1.53 16 5 C -0.09 -0.94 4.95 -104.63 -0.52 -1.46 16 6 C -0.08 -0.79 4.61 -27.89 -0.13 -0.92 16 7 C 0.15 1.87 2.36 -67.93 -0.16 1.71 16 8 H 0.10 1.36 7.57 -51.93 -0.39 0.97 16 9 C 0.06 0.69 6.85 37.16 0.25 0.94 16 10 O -0.57 -5.69 12.83 -35.23 -0.45 -6.14 16 11 N -0.73 -10.19 4.47 -53.80 -0.24 -10.43 16 12 C 0.51 9.59 7.79 -10.98 -0.09 9.51 16 13 O -0.55 -12.20 15.64 5.56 0.09 -12.12 16 14 C -0.12 -2.46 5.64 -27.88 -0.16 -2.61 16 15 C 0.00 0.07 3.33 -27.89 -0.09 -0.02 16 16 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 20 Si 0.88 22.93 27.47 -169.99 -4.67 18.26 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.26 -6.82 6.54 56.52 0.37 -6.45 16 24 C -0.11 -1.23 9.70 -39.58 -0.38 -1.62 16 25 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 30 H 0.12 1.16 7.57 -52.49 -0.40 0.76 16 31 H 0.09 0.83 7.67 -51.93 -0.40 0.43 16 32 H 0.08 0.67 8.08 -51.92 -0.42 0.25 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.38 2.28 9.12 45.56 0.42 2.69 16 36 H 0.40 4.83 7.83 -40.82 -0.32 4.51 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 40 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -35.61 359.76 -8.25 -43.86 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.08 Total: 3.92 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -3.09 Total: -15.18 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.53 Total: -38.02 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.36 Total: -18.26 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.67 Total: 18.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.61 -8.25 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360464058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.554 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds