Wall clock time and date at job start Tue Mar 31 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 120.00095 * 2 1 4 4 C 1.38234 * 120.00294 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99810 * 359.96333 * 4 3 2 6 6 C 1.50696 * 119.99848 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47334 * 89.99979 * 6 5 4 8 8 H 1.08995 * 109.47536 * 54.99704 * 7 6 5 9 9 C 1.53000 * 109.47680 * 174.99858 * 7 6 5 10 10 O 1.42904 * 109.46842 * 54.99481 * 9 7 6 11 11 N 1.46506 * 109.47011 * 294.99626 * 7 6 5 12 12 C 1.34773 * 119.99968 * 154.99680 * 11 7 6 13 13 O 1.21283 * 120.00360 * 359.73034 * 12 11 7 14 14 C 1.50706 * 120.00081 * 180.02562 * 12 11 7 15 15 C 1.52998 * 109.47348 * 179.72561 * 14 12 11 16 16 C 1.50696 * 109.46969 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00408 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99883 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99875 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99961 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46983 * 89.99938 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00008 * 20 18 16 23 23 H 1.48505 * 109.47256 * 330.00013 * 20 18 16 24 24 C 1.38236 * 120.00085 * 0.26613 * 5 4 3 25 25 C 1.38231 * 120.00148 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46962 * 90.00044 * 1 2 3 27 27 H 1.08996 * 109.47249 * 209.99746 * 1 2 3 28 28 H 1.09001 * 109.47262 * 330.00527 * 1 2 3 29 29 H 1.08004 * 119.99614 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00354 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47401 * 329.99317 * 6 5 4 32 32 H 1.09007 * 109.47069 * 209.99740 * 6 5 4 33 33 H 1.08995 * 109.47594 * 174.99234 * 9 7 6 34 34 H 1.08995 * 109.47216 * 295.00222 * 9 7 6 35 35 H 0.96703 * 114.00222 * 180.02562 * 10 9 7 36 36 H 0.96998 * 119.99507 * 335.00535 * 11 7 6 37 37 H 1.09001 * 109.46564 * 299.73030 * 14 12 11 38 38 H 1.08998 * 109.47012 * 59.72084 * 14 12 11 39 39 H 1.09000 * 109.46986 * 300.00089 * 15 14 12 40 40 H 1.09002 * 109.46857 * 60.00224 * 15 14 12 41 41 H 0.96999 * 119.99804 * 180.02562 * 19 18 16 42 42 H 1.07994 * 120.00235 * 179.72796 * 24 5 4 43 43 H 1.07998 * 119.99908 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0018 6 6 5.7787 0.0001 0.0018 7 6 6.2887 0.0017 1.4443 8 1 5.8541 -0.8394 1.9843 9 6 7.8135 -0.1240 1.4463 10 8 8.3780 0.9129 0.6411 11 7 5.9012 1.2543 2.0979 12 6 5.7743 1.3036 3.4387 13 8 5.9762 0.3097 4.1039 14 6 5.3751 2.5919 4.1110 15 6 5.2972 2.3751 5.6236 16 6 4.8987 3.6636 6.2958 17 1 4.7185 4.5485 5.7035 18 6 4.7640 3.7127 7.6672 19 7 4.4157 4.8371 8.2538 20 14 5.0763 2.1824 8.6918 21 1 6.5080 2.1323 9.0830 22 1 4.2308 2.2225 9.9119 23 1 4.7384 0.9757 7.8949 24 6 3.5806 -1.1971 -0.0030 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6581 2.1325 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 6.1420 0.8895 -0.5131 32 1 6.1420 -0.8905 -0.5110 33 1 8.1842 -0.0336 2.4673 34 1 8.0986 -1.0947 1.0408 35 1 9.3438 0.8945 0.5964 36 1 5.7358 2.0481 1.5655 37 1 6.1160 3.3608 3.8918 38 1 4.4011 2.9094 3.7388 39 1 4.5564 1.6062 5.8427 40 1 6.2713 2.0577 5.9957 41 1 4.3213 4.8717 9.2186 42 1 4.1205 -2.1324 -0.0064 43 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360464058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:18 Heat of formation + Delta-G solvation = -112.175753 kcal Electronic energy + Delta-G solvation = -23020.267150 eV Core-core repulsion = 19642.246884 eV Total energy + Delta-G solvation = -3378.020266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09780 -40.13631 -38.22141 -36.08738 -35.52631 -34.15321 -33.31724 -31.80110 -31.43035 -28.81608 -27.80823 -25.63668 -23.75793 -23.55014 -22.10533 -21.41810 -21.12575 -19.23462 -18.45445 -17.52798 -17.37453 -16.79610 -16.49590 -16.29023 -16.13019 -15.90839 -15.45100 -15.07255 -14.74298 -14.58701 -14.45680 -14.25560 -14.17402 -13.73380 -13.52344 -13.38830 -13.04740 -12.92990 -12.81535 -12.58572 -12.17414 -12.07852 -11.97910 -11.79667 -11.78393 -11.76542 -11.40996 -11.00442 -10.78764 -10.67389 -10.04591 -9.77159 -9.32520 -8.32184 -6.35043 0.44809 0.54256 1.32053 1.33844 1.49325 1.71806 2.27717 2.34393 2.84507 3.03412 3.40971 3.73621 3.93397 3.94589 4.08153 4.11733 4.19302 4.29986 4.34218 4.39364 4.46477 4.48966 4.59862 4.62733 4.73115 4.81130 4.82196 4.89120 4.97815 5.00572 5.12575 5.24161 5.32210 5.33696 5.43662 5.54538 5.55447 5.60756 5.74496 5.76661 6.17787 6.23149 6.61927 6.71008 6.88890 7.30248 7.33823 8.83664 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.004296 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.551310 B = 6515.993353 C = 7943.308764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.105 4.105 3 C -0.134 4.134 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.068 4.068 7 C 0.150 3.850 8 H 0.080 0.920 9 C 0.070 3.930 10 O -0.576 6.576 11 N -0.705 5.705 12 C 0.516 3.484 13 O -0.587 6.587 14 C -0.117 4.117 15 C 0.008 3.992 16 C -0.530 4.530 17 H 0.049 0.951 18 C 0.015 3.985 19 N -0.943 5.943 20 Si 0.938 3.062 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.124 4.124 25 C -0.133 4.133 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.395 0.605 36 H 0.410 0.590 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.268 0.732 42 H 0.135 0.865 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 -12.776 -23.886 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.105 4.105 3 C -0.152 4.152 4 C -0.137 4.137 5 C -0.098 4.098 6 C -0.105 4.105 7 C 0.045 3.955 8 H 0.098 0.902 9 C -0.009 4.009 10 O -0.384 6.384 11 N -0.357 5.357 12 C 0.305 3.695 13 O -0.467 6.467 14 C -0.157 4.157 15 C -0.030 4.030 16 C -0.568 4.568 17 H 0.067 0.933 18 C -0.183 4.183 19 N -0.584 5.584 20 Si 0.763 3.237 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.142 4.142 25 C -0.151 4.151 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.245 0.755 36 H 0.247 0.753 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.077 0.923 42 H 0.153 0.847 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.295 -13.254 -23.347 26.848 hybrid contribution 0.513 -0.033 0.892 1.029 sum 0.808 -13.287 -22.455 26.104 Atomic orbital electron populations 1.20819 0.90028 1.03179 1.02971 1.20253 0.97296 0.93358 0.99586 1.21301 0.94658 0.98251 1.01033 1.21243 0.94393 0.98145 0.99881 1.20002 0.96038 0.93384 1.00374 1.20703 0.90103 1.05520 0.94174 1.21112 0.93073 0.87511 0.93818 0.90180 1.22510 0.93112 0.91500 0.93792 1.86397 1.27044 1.53487 1.71496 1.45889 1.69836 1.14097 1.05837 1.21089 0.75321 0.90453 0.82669 1.90618 1.52487 1.38308 1.65309 1.21480 1.03572 0.94501 0.96176 1.19186 0.96062 0.95109 0.92617 1.21428 1.46227 0.96573 0.92542 0.93295 1.25791 0.94366 0.98781 0.99327 1.70024 1.49692 1.27939 1.10735 0.85832 0.78905 0.80681 0.78318 1.19217 1.20226 1.18749 1.21300 0.94511 0.98219 1.00201 1.21285 0.94546 0.98167 1.01116 0.90082 0.91097 0.91447 0.85229 0.85174 0.88989 0.87767 0.95411 0.90274 0.75528 0.75322 0.88298 0.88523 0.97395 0.97313 0.92348 0.84666 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.24 0.71 -1.09 16 2 C -0.10 -2.17 5.88 -19.87 -0.12 -2.29 16 3 C -0.13 -2.88 9.70 22.27 0.22 -2.66 16 4 C -0.12 -2.48 9.10 22.27 0.20 -2.28 16 5 C -0.10 -1.98 4.95 -19.87 -0.10 -2.07 16 6 C -0.07 -1.14 4.61 29.85 0.14 -1.00 16 7 C 0.15 3.36 2.36 44.99 0.11 3.47 16 8 H 0.08 2.14 7.57 -2.39 -0.02 2.12 16 9 C 0.07 1.37 6.85 71.98 0.49 1.87 16 10 O -0.58 -9.92 12.83 -148.98 -1.91 -11.84 16 11 N -0.70 -18.76 4.47 -442.53 -1.98 -20.74 16 12 C 0.52 18.98 7.79 87.66 0.68 19.66 16 13 O -0.59 -26.17 15.64 -3.04 -0.05 -26.22 16 14 C -0.12 -4.67 5.64 29.85 0.17 -4.50 16 15 C 0.01 0.42 3.33 29.85 0.10 0.52 16 16 C -0.53 -31.25 9.66 25.60 0.25 -31.00 16 17 H 0.05 3.04 7.99 -2.91 -0.02 3.01 16 18 C 0.02 0.91 5.47 84.66 0.46 1.37 16 19 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 20 Si 0.94 47.46 27.47 68.60 1.88 49.34 16 21 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.26 -13.31 6.54 99.48 0.65 -12.66 16 24 C -0.12 -2.47 9.70 22.27 0.22 -2.26 16 25 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 28 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.13 2.31 7.57 -2.91 -0.02 2.29 16 31 H 0.09 1.49 7.67 -2.39 -0.02 1.47 16 32 H 0.10 1.34 8.08 -2.38 -0.02 1.32 16 33 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.40 3.65 9.12 -74.06 -0.68 2.97 16 36 H 0.41 9.12 7.83 -92.71 -0.73 8.40 16 37 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 38 H 0.10 3.57 8.14 -2.39 -0.02 3.56 16 39 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 40 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 41 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 42 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 43 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -76.73 359.76 1.54 -75.18 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -0.45 Total: 18.45 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 3.75 Total: -24.73 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -1.68 Total: -80.20 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.96 Total: -38.05 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.88 Total: 49.34 kcal Total: -76.73 1.54 -75.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360464058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.993 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds