Wall clock time and date at job start Tue Mar 31 2020 07:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08998 * 109.47533 * 159.97844 * 7 6 5 9 9 C 1.53005 * 109.47221 * 279.98023 * 7 6 5 10 10 O 1.42900 * 109.47132 * 55.00039 * 9 7 6 11 11 N 1.46506 * 109.47359 * 39.97685 * 7 6 5 12 12 C 1.34770 * 120.00151 * 154.99928 * 11 7 6 13 13 O 1.21279 * 120.00075 * 0.02562 * 12 11 7 14 14 C 1.50700 * 119.99838 * 180.02562 * 12 11 7 15 15 C 1.53006 * 109.47030 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47030 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00216 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99855 * 179.97438 * 16 15 14 19 19 N 1.31523 * 120.00013 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00041 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47133 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47074 * 120.00254 * 20 18 16 23 23 H 1.48502 * 109.47394 * 240.00338 * 20 18 16 24 24 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 25 25 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 33 33 H 1.08994 * 109.47186 * 174.99811 * 9 7 6 34 34 H 1.09004 * 109.46702 * 294.99855 * 9 7 6 35 35 H 0.96702 * 114.00057 * 180.02562 * 10 9 7 36 36 H 0.97007 * 119.99690 * 334.99998 * 11 7 6 37 37 H 1.08996 * 109.47278 * 299.99415 * 14 12 11 38 38 H 1.08995 * 109.47370 * 60.00215 * 14 12 11 39 39 H 1.09004 * 109.46690 * 299.99578 * 15 14 12 40 40 H 1.08993 * 109.47547 * 59.99557 * 15 14 12 41 41 H 0.96999 * 120.00063 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00166 * 179.97438 * 24 6 5 43 43 H 1.07996 * 120.00605 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.2442 5.9084 0.9654 9 6 4.9649 5.4569 -0.2496 10 8 5.2518 4.7515 -1.4588 11 7 2.7813 6.2042 -1.0588 12 6 2.6600 7.5427 -0.9587 13 8 3.1092 8.1217 0.0076 14 6 1.9661 8.3198 -2.0476 15 6 1.9653 9.8077 -1.6909 16 6 1.2720 10.5850 -2.7801 17 1 0.8722 10.0694 -3.6407 18 6 1.1480 11.9543 -2.6778 19 7 1.6352 12.5823 -1.6299 20 14 0.2892 12.9179 -4.0281 21 1 -0.1651 11.9844 -5.0899 22 1 -0.8840 13.6287 -3.4594 23 1 1.2335 13.9063 -4.6082 24 6 2.7234 3.3758 1.1971 25 6 2.2627 2.0725 1.1971 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0926 1.5598 -2.1325 32 1 2.9045 3.8845 -2.1325 33 1 5.3129 6.4860 -0.3380 34 1 5.4736 4.9717 0.5836 35 1 6.1925 4.7163 -1.6799 36 1 2.4223 5.7410 -1.8319 37 1 2.4924 8.1730 -2.9907 38 1 0.9389 7.9690 -2.1462 39 1 1.4392 9.9550 -0.7477 40 1 2.9926 10.1583 -1.5925 41 1 1.5483 13.5457 -1.5580 42 1 2.9031 3.8851 2.1324 43 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360766631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:29 Heat of formation + Delta-G solvation = -86.218739 kcal Electronic energy + Delta-G solvation = -22595.413767 eV Core-core repulsion = 19218.519082 eV Total energy + Delta-G solvation = -3376.894686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16132 -38.90725 -37.02124 -35.05609 -33.53964 -33.40370 -31.25486 -31.02176 -30.07147 -27.97510 -25.63198 -24.35004 -22.97757 -22.48269 -21.31940 -20.25319 -19.59734 -17.59705 -17.10400 -16.55079 -15.80945 -15.61636 -15.27378 -15.20610 -14.84926 -14.43158 -14.15566 -13.92753 -13.83785 -13.66823 -13.33899 -13.07962 -12.74219 -12.53532 -12.16292 -12.12554 -11.79230 -11.57743 -11.44500 -11.12851 -10.98018 -10.94195 -10.92405 -10.56299 -10.09276 -9.93235 -9.64289 -9.16588 -9.01550 -9.00061 -8.81011 -8.59059 -8.30387 -5.94563 -3.98581 1.18544 1.32573 3.26079 3.33780 3.40411 3.43586 3.47766 3.73829 4.23438 4.46512 4.49332 4.61166 4.66967 4.91238 4.92832 5.08661 5.16489 5.26728 5.33049 5.36980 5.39491 5.40474 5.47416 5.59486 5.65188 5.71307 5.82464 5.86551 5.95014 5.99960 6.26654 6.28385 6.31163 6.47023 6.48870 6.79420 6.88850 6.93043 7.54617 7.76863 7.88805 7.93119 8.09217 8.41041 8.80022 9.10292 9.64851 11.16466 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.002902 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.030822 B = 9647.768248 C =10240.585445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.120 4.120 5 C -0.084 4.084 6 C -0.087 4.087 7 C 0.188 3.812 8 H 0.105 0.895 9 C 0.069 3.931 10 O -0.565 6.565 11 N -0.730 5.730 12 C 0.512 3.488 13 O -0.538 6.538 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.108 4.108 25 C -0.120 4.120 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.375 0.625 36 H 0.399 0.601 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.122 0.878 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 -26.281 3.132 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.138 4.138 5 C -0.103 4.103 6 C -0.088 4.088 7 C 0.082 3.918 8 H 0.123 0.877 9 C -0.010 4.010 10 O -0.370 6.370 11 N -0.385 5.385 12 C 0.300 3.700 13 O -0.414 6.414 14 C -0.170 4.170 15 C 0.000 4.000 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.127 4.127 25 C -0.138 4.138 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.222 0.778 36 H 0.234 0.766 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.140 0.860 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.190 -25.721 3.917 26.212 hybrid contribution 0.075 0.476 -0.993 1.104 sum 3.266 -25.245 2.924 25.623 Atomic orbital electron populations 1.21751 0.94718 1.01589 1.02397 1.20535 0.96204 0.92774 1.02645 1.19888 0.99149 0.96182 0.93291 1.20997 1.00429 0.94947 0.97423 1.20918 0.97192 0.94334 0.97816 1.19794 0.99979 0.95280 0.93706 1.19808 0.90062 0.88297 0.93599 0.87729 1.22586 0.95530 0.96132 0.86761 1.86466 1.29920 1.77959 1.42646 1.46260 1.60608 1.07586 1.24009 1.21590 0.78644 0.81165 0.88555 1.90655 1.48416 1.69094 1.33223 1.21864 0.99550 0.99842 0.95725 1.18899 0.98140 0.85983 0.97002 1.21271 1.37102 0.92151 1.05834 0.92555 1.25032 0.95750 0.97926 0.95752 1.70013 1.45682 1.08745 1.28469 0.86535 0.79332 0.80052 0.82044 1.19740 1.21033 1.21036 1.20993 0.99343 0.94949 0.97395 1.20924 1.00655 0.94780 0.97456 0.92512 0.92526 0.92448 0.91217 0.91152 0.86235 0.85681 0.92389 0.93188 0.77816 0.76608 0.90220 0.90252 0.95820 0.95856 0.93038 0.85997 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.60 6.07 -27.88 -0.17 -0.77 16 3 C -0.09 -0.80 5.13 -104.62 -0.54 -1.34 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 5 C -0.08 -0.94 8.05 -39.58 -0.32 -1.26 16 6 C -0.09 -1.03 4.83 -104.62 -0.51 -1.54 16 7 C 0.19 2.52 2.61 -69.08 -0.18 2.34 16 8 H 0.10 1.52 7.44 -51.93 -0.39 1.13 16 9 C 0.07 0.84 6.84 37.16 0.25 1.09 16 10 O -0.57 -6.23 12.04 -35.23 -0.42 -6.65 16 11 N -0.73 -10.96 4.97 -54.93 -0.27 -11.23 16 12 C 0.51 10.02 7.79 -10.99 -0.09 9.93 16 13 O -0.54 -12.58 15.64 5.56 0.09 -12.49 16 14 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 20 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.11 -1.16 9.67 -39.58 -0.38 -1.55 16 25 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.37 6.67 -52.49 -0.35 1.02 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.38 2.65 9.12 45.56 0.42 3.07 16 36 H 0.40 5.19 6.87 -40.82 -0.28 4.91 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -34.78 361.23 -8.51 -43.29 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.05 Total: 4.36 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -3.01 Total: -12.64 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.46 Total: -38.16 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.34 Total: -19.14 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.78 -8.51 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360766631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.924 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds