Wall clock time and date at job start Tue Mar 31 2020 07:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08998 * 109.47533 * 159.97844 * 7 6 5 9 9 C 1.53005 * 109.47221 * 279.98023 * 7 6 5 10 10 O 1.42900 * 109.47132 * 55.00039 * 9 7 6 11 11 N 1.46506 * 109.47359 * 39.97685 * 7 6 5 12 12 C 1.34770 * 120.00151 * 154.99928 * 11 7 6 13 13 O 1.21279 * 120.00075 * 0.02562 * 12 11 7 14 14 C 1.50700 * 119.99838 * 180.02562 * 12 11 7 15 15 C 1.53006 * 109.47030 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47030 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00216 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99855 * 179.97438 * 16 15 14 19 19 N 1.31523 * 120.00013 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00041 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47133 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47074 * 120.00254 * 20 18 16 23 23 H 1.48502 * 109.47394 * 240.00338 * 20 18 16 24 24 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 25 25 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 33 33 H 1.08994 * 109.47186 * 174.99811 * 9 7 6 34 34 H 1.09004 * 109.46702 * 294.99855 * 9 7 6 35 35 H 0.96702 * 114.00057 * 180.02562 * 10 9 7 36 36 H 0.97007 * 119.99690 * 334.99998 * 11 7 6 37 37 H 1.08996 * 109.47278 * 299.99415 * 14 12 11 38 38 H 1.08995 * 109.47370 * 60.00215 * 14 12 11 39 39 H 1.09004 * 109.46690 * 299.99578 * 15 14 12 40 40 H 1.08993 * 109.47547 * 59.99557 * 15 14 12 41 41 H 0.96999 * 120.00063 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00166 * 179.97438 * 24 6 5 43 43 H 1.07996 * 120.00605 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.2442 5.9084 0.9654 9 6 4.9649 5.4569 -0.2496 10 8 5.2518 4.7515 -1.4588 11 7 2.7813 6.2042 -1.0588 12 6 2.6600 7.5427 -0.9587 13 8 3.1092 8.1217 0.0076 14 6 1.9661 8.3198 -2.0476 15 6 1.9653 9.8077 -1.6909 16 6 1.2720 10.5850 -2.7801 17 1 0.8722 10.0694 -3.6407 18 6 1.1480 11.9543 -2.6778 19 7 1.6352 12.5823 -1.6299 20 14 0.2892 12.9179 -4.0281 21 1 -0.1651 11.9844 -5.0899 22 1 -0.8840 13.6287 -3.4594 23 1 1.2335 13.9063 -4.6082 24 6 2.7234 3.3758 1.1971 25 6 2.2627 2.0725 1.1971 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0926 1.5598 -2.1325 32 1 2.9045 3.8845 -2.1325 33 1 5.3129 6.4860 -0.3380 34 1 5.4736 4.9717 0.5836 35 1 6.1925 4.7163 -1.6799 36 1 2.4223 5.7410 -1.8319 37 1 2.4924 8.1730 -2.9907 38 1 0.9389 7.9690 -2.1462 39 1 1.4392 9.9550 -0.7477 40 1 2.9926 10.1583 -1.5925 41 1 1.5483 13.5457 -1.5580 42 1 2.9031 3.8851 2.1324 43 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360766631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:28 Heat of formation + Delta-G solvation = -110.184620 kcal Electronic energy + Delta-G solvation = -22596.453006 eV Core-core repulsion = 19218.519082 eV Total energy + Delta-G solvation = -3377.933924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26624 -40.12090 -38.04440 -36.03416 -35.54895 -34.49858 -33.06999 -31.86361 -31.23010 -28.91163 -27.57782 -25.18190 -24.09499 -23.64951 -22.58411 -21.25332 -21.04805 -18.96060 -18.39131 -17.99639 -17.29827 -16.58258 -16.50047 -16.43634 -16.15900 -15.92037 -15.31887 -14.97908 -14.67446 -14.51729 -14.36214 -14.17182 -14.10804 -13.99574 -13.43589 -13.32917 -13.22284 -12.84862 -12.55145 -12.45300 -12.43178 -12.09352 -11.93629 -11.70490 -11.63341 -11.62637 -11.28916 -11.07143 -10.70143 -10.58091 -10.13340 -9.77967 -9.43482 -8.18426 -6.32249 0.37856 0.54190 1.41922 1.43360 1.56779 1.69309 2.20586 2.44190 2.86430 3.14544 3.33008 3.59427 3.91243 3.96777 4.03636 4.12899 4.18000 4.31865 4.41196 4.48711 4.53707 4.54558 4.56105 4.60231 4.68698 4.74121 4.78210 5.06774 5.08291 5.11214 5.14123 5.23303 5.40159 5.41346 5.50240 5.53226 5.63087 5.73446 5.75856 5.85269 6.12329 6.17752 6.56908 6.84396 6.86164 7.30670 7.37931 8.94477 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.002902 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.030822 B = 9647.768248 C =10240.585445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.085 4.085 4 C -0.125 4.125 5 C -0.093 4.093 6 C -0.100 4.100 7 C 0.184 3.816 8 H 0.088 0.912 9 C 0.077 3.923 10 O -0.570 6.570 11 N -0.708 5.708 12 C 0.514 3.486 13 O -0.585 6.585 14 C -0.120 4.120 15 C 0.044 3.956 16 C -0.542 4.542 17 H 0.075 0.925 18 C -0.008 4.008 19 N -0.937 5.937 20 Si 0.974 3.026 21 H -0.253 1.253 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.118 4.118 25 C -0.124 4.124 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.394 0.606 36 H 0.411 0.589 37 H 0.102 0.898 38 H 0.102 0.898 39 H -0.017 1.017 40 H -0.017 1.017 41 H 0.263 0.737 42 H 0.129 0.871 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -28.722 1.501 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.143 4.143 5 C -0.111 4.111 6 C -0.101 4.101 7 C 0.080 3.920 8 H 0.106 0.894 9 C -0.002 4.002 10 O -0.378 6.378 11 N -0.361 5.361 12 C 0.303 3.697 13 O -0.465 6.465 14 C -0.160 4.160 15 C 0.006 3.994 16 C -0.580 4.580 17 H 0.093 0.907 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.177 1.177 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.137 4.137 25 C -0.142 4.142 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.243 0.757 36 H 0.249 0.751 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.002 0.998 40 H 0.002 0.998 41 H 0.072 0.928 42 H 0.147 0.853 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.365 -28.234 2.253 28.422 hybrid contribution 0.365 1.123 -0.446 1.262 sum 2.730 -27.111 1.808 27.308 Atomic orbital electron populations 1.21743 0.94461 1.02366 1.01793 1.20585 0.96295 0.91375 1.03734 1.20222 0.98079 0.97271 0.92965 1.21238 0.99999 0.94554 0.98532 1.20973 0.97659 0.95011 0.97444 1.19653 1.01572 0.94223 0.94629 1.19899 0.90961 0.89074 0.92099 0.89355 1.22387 0.94623 0.95134 0.88068 1.86418 1.31850 1.77479 1.42042 1.46002 1.59384 1.06044 1.24698 1.21305 0.78322 0.82519 0.87571 1.90641 1.50612 1.70374 1.34879 1.21637 1.01543 0.95817 0.96955 1.18678 0.94980 0.90494 0.95243 1.21740 1.36971 0.92833 1.06455 0.90732 1.26141 0.96463 0.99393 0.98490 1.70185 1.47274 1.09251 1.31050 0.85266 0.77864 0.78353 0.78718 1.17680 1.20584 1.20552 1.21172 0.99464 0.95642 0.97378 1.21194 1.00033 0.94382 0.98585 0.91091 0.93109 0.93080 0.90103 0.90152 0.84522 0.85709 0.94904 0.91086 0.75703 0.75106 0.87983 0.88017 0.99835 0.99818 0.92841 0.85300 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.89 71.98 0.71 -0.93 16 2 C -0.08 -0.95 6.07 29.85 0.18 -0.77 16 3 C -0.09 -1.41 5.13 -19.87 -0.10 -1.51 16 4 C -0.13 -2.23 9.70 22.27 0.22 -2.01 16 5 C -0.09 -1.93 8.05 22.27 0.18 -1.75 16 6 C -0.10 -2.28 4.83 -19.87 -0.10 -2.38 16 7 C 0.18 4.95 2.61 44.25 0.12 5.07 16 8 H 0.09 2.67 7.44 -2.39 -0.02 2.65 16 9 C 0.08 1.85 6.84 71.98 0.49 2.34 16 10 O -0.57 -11.85 12.04 -148.98 -1.79 -13.64 16 11 N -0.71 -21.10 4.97 -446.09 -2.22 -23.32 16 12 C 0.51 20.59 7.79 87.66 0.68 21.27 16 13 O -0.59 -28.83 15.64 -3.03 -0.05 -28.87 16 14 C -0.12 -4.99 5.64 29.85 0.17 -4.82 16 15 C 0.04 2.48 4.26 29.85 0.13 2.61 16 16 C -0.54 -31.36 9.11 25.60 0.23 -31.12 16 17 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 18 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 19 N -0.94 -60.03 13.29 21.45 0.28 -59.74 16 20 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 21 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 C -0.12 -2.41 9.67 22.27 0.22 -2.19 16 25 C -0.12 -2.16 9.70 22.27 0.22 -1.94 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 30 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 31 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.13 2.53 6.67 -2.91 -0.02 2.51 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.39 4.95 9.12 -74.06 -0.68 4.27 16 36 H 0.41 10.20 6.87 -92.70 -0.64 9.56 16 37 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 38 H 0.10 3.77 8.14 -2.39 -0.02 3.76 16 39 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 40 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.13 2.34 8.04 -2.91 -0.02 2.32 16 43 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -77.67 361.23 1.75 -75.92 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -0.31 Total: 20.92 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.80 Total: -18.11 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.93 Total: -83.06 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -1.84 Total: -42.51 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -77.67 1.75 -75.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360766631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.262 kcal (2) G-P(sol) polarization free energy of solvation -77.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds