Wall clock time and date at job start Tue Mar 31 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35972 * 116.99983 * 2 1 4 4 C 1.38740 * 119.98462 * 359.97438 * 3 2 1 5 5 C 1.38073 * 120.01188 * 179.72271 * 4 3 2 6 6 C 1.50706 * 120.00720 * 180.27130 * 5 4 3 7 7 C 1.38864 * 119.98442 * 0.56759 * 5 4 3 8 8 N 1.40115 * 120.01144 * 179.72189 * 7 5 4 9 9 C 1.34773 * 120.00428 * 307.73525 * 8 7 5 10 10 O 1.21291 * 119.99639 * 356.11035 * 9 8 7 11 11 C 1.50697 * 120.00065 * 176.38969 * 9 8 7 12 12 C 1.52993 * 109.47094 * 179.72157 * 11 9 8 13 13 C 1.50707 * 109.47343 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99400 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00324 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99740 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99928 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47330 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47083 * 119.99965 * 17 15 13 20 20 H 1.48504 * 109.46776 * 239.99740 * 17 15 13 21 21 C 1.38823 * 119.97429 * 359.45520 * 7 5 4 22 22 C 1.50687 * 120.01185 * 180.22837 * 21 7 5 23 23 C 1.38116 * 119.98163 * 0.24611 * 21 7 5 24 24 C 1.50692 * 119.99249 * 180.02562 * 23 21 7 25 25 H 1.09002 * 109.47332 * 300.00332 * 1 2 3 26 26 H 1.09005 * 109.46980 * 60.00132 * 1 2 3 27 27 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.99505 * 359.97438 * 4 3 2 29 29 H 1.08993 * 109.47175 * 278.18915 * 6 5 4 30 30 H 1.09006 * 109.46891 * 38.18870 * 6 5 4 31 31 H 1.08996 * 109.46983 * 158.18340 * 6 5 4 32 32 H 0.97004 * 119.99536 * 127.73718 * 8 7 5 33 33 H 1.09001 * 109.47229 * 299.72469 * 11 9 8 34 34 H 1.09008 * 109.46865 * 59.72495 * 11 9 8 35 35 H 1.08997 * 109.47567 * 299.99777 * 12 11 9 36 36 H 1.09006 * 109.47399 * 60.00099 * 12 11 9 37 37 H 0.96992 * 119.99575 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47481 * 89.99709 * 22 21 7 39 39 H 1.08997 * 109.47556 * 209.99684 * 22 21 7 40 40 H 1.08999 * 109.47536 * 330.00111 * 22 21 7 41 41 H 1.08995 * 109.47166 * 90.00018 * 24 23 21 42 42 H 1.09005 * 109.47271 * 209.99980 * 24 23 21 43 43 H 1.08996 * 109.47262 * 329.99787 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3749 -0.0005 5 6 1.9166 3.6054 0.0052 6 6 1.0953 4.8690 0.0108 7 6 3.3033 3.6784 -0.0003 8 7 3.9393 4.9269 -0.0003 9 6 3.6050 5.8536 -0.9201 10 8 2.8052 5.5828 -1.7907 11 6 4.2298 7.2241 -0.8704 12 6 3.6880 8.0735 -2.0218 13 6 4.3132 9.4438 -1.9726 14 1 5.0254 9.6848 -1.1973 15 6 3.9752 10.3902 -2.9167 16 7 3.1075 10.0968 -3.8605 17 14 4.7497 12.0890 -2.8552 18 1 5.6858 12.1649 -1.7050 19 1 5.4926 12.3402 -4.1162 20 1 3.6856 13.1125 -2.6952 21 6 4.0591 2.5140 -0.0002 22 6 5.5640 2.5923 -0.0011 23 6 3.4315 1.2837 0.0002 24 6 4.2517 0.0196 0.0009 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2119 2.3180 -0.0014 29 1 0.7748 5.0986 -1.0053 30 1 0.2199 4.7306 0.6454 31 1 1.6972 5.6918 0.3967 32 1 4.6204 5.1242 0.6617 33 1 3.9854 7.7006 0.0789 34 1 5.3121 7.1336 -0.9637 35 1 3.9324 7.5970 -2.9712 36 1 2.6057 8.1639 -1.9287 37 1 2.8695 10.7626 -4.5244 38 1 5.9274 2.6116 1.0264 39 1 5.9728 1.7222 -0.5147 40 1 5.8804 3.4997 -0.5154 41 1 4.4493 -0.2847 1.0286 42 1 3.7029 -0.7699 -0.5127 43 1 5.1961 0.1990 -0.5129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362247303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:18 Heat of formation + Delta-G solvation = -66.015968 kcal Electronic energy + Delta-G solvation = -23257.880356 eV Core-core repulsion = 19881.861728 eV Total energy + Delta-G solvation = -3376.018628 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81131 -39.38439 -37.57823 -34.51112 -33.98256 -33.45563 -31.19500 -30.29875 -29.18082 -27.58912 -27.06221 -25.61307 -24.49153 -22.41415 -20.98186 -20.48421 -19.51444 -17.42225 -17.20438 -16.73051 -16.62473 -15.91589 -15.60733 -14.95738 -14.47077 -14.30140 -14.12373 -13.89272 -13.42646 -13.16905 -13.11778 -12.85645 -12.80207 -12.44638 -12.25947 -12.09658 -11.90266 -11.82276 -11.78861 -11.42214 -11.18594 -10.97596 -10.77657 -10.66748 -10.59265 -9.98482 -9.68731 -9.46795 -9.19404 -9.04132 -8.45474 -8.34307 -7.66671 -5.97963 -4.02337 1.29654 1.41074 3.16130 3.18389 3.31463 3.38404 3.41406 3.49596 3.72184 4.46192 4.71331 4.73544 4.93083 4.96705 4.99838 5.15107 5.25326 5.27505 5.37246 5.38664 5.45742 5.52678 5.61533 5.64026 5.77459 5.80787 5.89147 5.90555 6.01671 6.16960 6.18635 6.29379 6.34299 6.46757 6.62667 6.64805 6.85608 7.00968 7.37421 7.72509 7.79148 7.83207 8.04664 8.36369 8.73160 9.06236 9.61423 11.12957 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029355 B = 0.003221 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.606466 B = 8690.137590 C = 9301.427596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.119 3.881 4 C -0.198 4.198 5 C -0.036 4.036 6 C -0.110 4.110 7 C 0.117 3.883 8 N -0.687 5.687 9 C 0.507 3.493 10 O -0.514 6.514 11 C -0.129 4.129 12 C 0.038 3.962 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.064 4.064 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.102 4.102 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.404 0.596 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 -19.992 11.833 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.074 3.926 4 C -0.217 4.217 5 C -0.039 4.039 6 C -0.166 4.166 7 C 0.023 3.977 8 N -0.336 5.336 9 C 0.297 3.703 10 O -0.387 6.387 11 C -0.169 4.169 12 C 0.000 4.000 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.066 4.066 22 C -0.172 4.172 23 C -0.116 4.116 24 C -0.159 4.159 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.240 0.760 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.204 -20.226 11.017 23.063 hybrid contribution 0.324 1.229 0.267 1.299 sum -0.880 -18.997 11.284 22.113 Atomic orbital electron populations 1.23021 0.78735 1.03566 1.01433 1.86033 1.21024 1.26893 1.89076 1.18669 0.91585 0.83957 0.98411 1.20881 0.99760 0.91259 1.09837 1.19654 0.92580 0.95120 0.96508 1.20891 0.98305 0.94115 1.03297 1.17224 0.90631 0.85041 1.04786 1.43801 1.42504 1.12701 1.34568 1.21703 0.81753 0.86969 0.79909 1.90688 1.33345 1.80193 1.34478 1.21887 1.00849 0.90081 1.04058 1.18903 0.96842 0.92672 0.91580 1.21247 1.25368 0.97220 1.12672 0.92547 1.25026 0.95170 0.98754 0.95439 1.70006 1.32844 1.34463 1.15454 0.86539 0.79146 0.84401 0.77903 1.19741 1.21010 1.21022 1.19466 0.96009 0.90763 1.00339 1.20800 0.90639 1.03451 1.02330 1.18781 0.90401 0.95103 1.07353 1.20614 0.98942 0.94332 1.01970 0.92786 0.92663 0.88491 0.85411 0.89307 0.92437 0.91756 0.75991 0.90073 0.90093 0.95785 0.95779 0.92998 0.90987 0.90823 0.91094 0.91647 0.91409 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.72 9.53 -19.65 -0.19 -3.90 16 3 C 0.12 1.58 6.66 -39.22 -0.26 1.32 16 4 C -0.20 -2.71 8.72 -39.46 -0.34 -3.05 16 5 C -0.04 -0.56 5.48 -104.45 -0.57 -1.14 16 6 C -0.11 -1.72 8.22 36.01 0.30 -1.42 16 7 C 0.12 1.77 5.84 -83.62 -0.49 1.28 16 8 N -0.69 -10.09 3.91 -9.83 -0.04 -10.13 16 9 C 0.51 9.57 5.96 -10.99 -0.07 9.50 16 10 O -0.51 -11.75 13.06 5.55 0.07 -11.67 16 11 C -0.13 -2.54 5.64 -27.89 -0.16 -2.70 16 12 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 13 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.06 -0.84 5.89 -104.46 -0.62 -1.46 16 22 C -0.12 -1.19 9.25 36.00 0.33 -0.86 16 23 C -0.12 -1.49 5.89 -104.50 -0.62 -2.10 16 24 C -0.10 -1.03 9.38 36.00 0.34 -0.69 16 25 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.13 1.47 6.29 -52.49 -0.33 1.14 16 29 H 0.09 1.60 7.09 -51.93 -0.37 1.23 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.06 1.06 6.15 -51.93 -0.32 0.74 16 32 H 0.40 4.58 8.67 -40.82 -0.35 4.23 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 35 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.67 5.94 -51.93 -0.31 0.36 16 40 H 0.07 0.78 7.44 -51.93 -0.39 0.39 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.69 7.52 -51.93 -0.39 0.30 16 43 H 0.07 0.60 5.94 -51.93 -0.31 0.29 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -34.24 347.69 -7.37 -41.61 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.48 Total: 1.56 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -1.69 Total: -12.73 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.70 Total: -36.62 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.11 Total: -15.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.24 -7.37 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362247303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.406 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds