Wall clock time and date at job start Tue Mar 31 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35972 * 116.99983 * 2 1 4 4 C 1.38740 * 119.98462 * 359.97438 * 3 2 1 5 5 C 1.38073 * 120.01188 * 179.72271 * 4 3 2 6 6 C 1.50706 * 120.00720 * 180.27130 * 5 4 3 7 7 C 1.38864 * 119.98442 * 0.56759 * 5 4 3 8 8 N 1.40115 * 120.01144 * 179.72189 * 7 5 4 9 9 C 1.34773 * 120.00428 * 307.73525 * 8 7 5 10 10 O 1.21291 * 119.99639 * 356.11035 * 9 8 7 11 11 C 1.50697 * 120.00065 * 176.38969 * 9 8 7 12 12 C 1.52993 * 109.47094 * 179.72157 * 11 9 8 13 13 C 1.50707 * 109.47343 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99400 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00324 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99740 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99928 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47330 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47083 * 119.99965 * 17 15 13 20 20 H 1.48504 * 109.46776 * 239.99740 * 17 15 13 21 21 C 1.38823 * 119.97429 * 359.45520 * 7 5 4 22 22 C 1.50687 * 120.01185 * 180.22837 * 21 7 5 23 23 C 1.38116 * 119.98163 * 0.24611 * 21 7 5 24 24 C 1.50692 * 119.99249 * 180.02562 * 23 21 7 25 25 H 1.09002 * 109.47332 * 300.00332 * 1 2 3 26 26 H 1.09005 * 109.46980 * 60.00132 * 1 2 3 27 27 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.99505 * 359.97438 * 4 3 2 29 29 H 1.08993 * 109.47175 * 278.18915 * 6 5 4 30 30 H 1.09006 * 109.46891 * 38.18870 * 6 5 4 31 31 H 1.08996 * 109.46983 * 158.18340 * 6 5 4 32 32 H 0.97004 * 119.99536 * 127.73718 * 8 7 5 33 33 H 1.09001 * 109.47229 * 299.72469 * 11 9 8 34 34 H 1.09008 * 109.46865 * 59.72495 * 11 9 8 35 35 H 1.08997 * 109.47567 * 299.99777 * 12 11 9 36 36 H 1.09006 * 109.47399 * 60.00099 * 12 11 9 37 37 H 0.96992 * 119.99575 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47481 * 89.99709 * 22 21 7 39 39 H 1.08997 * 109.47556 * 209.99684 * 22 21 7 40 40 H 1.08999 * 109.47536 * 330.00111 * 22 21 7 41 41 H 1.08995 * 109.47166 * 90.00018 * 24 23 21 42 42 H 1.09005 * 109.47271 * 209.99980 * 24 23 21 43 43 H 1.08996 * 109.47262 * 329.99787 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3749 -0.0005 5 6 1.9166 3.6054 0.0052 6 6 1.0953 4.8690 0.0108 7 6 3.3033 3.6784 -0.0003 8 7 3.9393 4.9269 -0.0003 9 6 3.6050 5.8536 -0.9201 10 8 2.8052 5.5828 -1.7907 11 6 4.2298 7.2241 -0.8704 12 6 3.6880 8.0735 -2.0218 13 6 4.3132 9.4438 -1.9726 14 1 5.0254 9.6848 -1.1973 15 6 3.9752 10.3902 -2.9167 16 7 3.1075 10.0968 -3.8605 17 14 4.7497 12.0890 -2.8552 18 1 5.6858 12.1649 -1.7050 19 1 5.4926 12.3402 -4.1162 20 1 3.6856 13.1125 -2.6952 21 6 4.0591 2.5140 -0.0002 22 6 5.5640 2.5923 -0.0011 23 6 3.4315 1.2837 0.0002 24 6 4.2517 0.0196 0.0009 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2119 2.3180 -0.0014 29 1 0.7748 5.0986 -1.0053 30 1 0.2199 4.7306 0.6454 31 1 1.6972 5.6918 0.3967 32 1 4.6204 5.1242 0.6617 33 1 3.9854 7.7006 0.0789 34 1 5.3121 7.1336 -0.9637 35 1 3.9324 7.5970 -2.9712 36 1 2.6057 8.1639 -1.9287 37 1 2.8695 10.7626 -4.5244 38 1 5.9274 2.6116 1.0264 39 1 5.9728 1.7222 -0.5147 40 1 5.8804 3.4997 -0.5154 41 1 4.4493 -0.2847 1.0286 42 1 3.7029 -0.7699 -0.5127 43 1 5.1961 0.1990 -0.5129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362247303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:18 Heat of formation + Delta-G solvation = -87.480441 kcal Electronic energy + Delta-G solvation = -23258.811125 eV Core-core repulsion = 19881.861728 eV Total energy + Delta-G solvation = -3376.949397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.94492 -40.59127 -38.69067 -35.76389 -35.45909 -35.11640 -33.03425 -31.43230 -30.22302 -28.55169 -28.11384 -27.28871 -25.53983 -24.09710 -22.21807 -21.79265 -20.80203 -18.90991 -18.33528 -18.06667 -17.85380 -17.35376 -16.69462 -16.46035 -16.37464 -15.21266 -15.13099 -15.06064 -14.74811 -14.49949 -14.31612 -14.16225 -13.88555 -13.80947 -13.57976 -13.24060 -13.03910 -12.89179 -12.82982 -12.78201 -12.61637 -12.44987 -12.34079 -11.94547 -11.79528 -11.65890 -11.63253 -11.27425 -10.81321 -10.61596 -10.54639 -9.47046 -8.75451 -8.17837 -6.31444 0.26594 0.31462 1.42538 1.43546 1.56851 1.70199 2.18058 2.37102 2.44635 2.65533 3.15546 3.71939 3.75504 3.97458 4.01633 4.18344 4.34291 4.37006 4.37965 4.42918 4.49127 4.54240 4.57821 4.67744 4.72193 4.73593 4.76894 4.81350 4.90593 5.04307 5.07292 5.13337 5.22589 5.29630 5.41596 5.50412 5.55547 5.61975 5.64042 5.85144 5.90540 6.18090 6.42238 6.54265 6.87317 7.33754 7.38903 8.94879 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029355 B = 0.003221 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.606466 B = 8690.137590 C = 9301.427596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.323 6.323 3 C 0.116 3.884 4 C -0.206 4.206 5 C -0.059 4.059 6 C -0.102 4.102 7 C 0.088 3.912 8 N -0.662 5.662 9 C 0.512 3.488 10 O -0.563 6.563 11 C -0.117 4.117 12 C 0.044 3.956 13 C -0.541 4.541 14 H 0.076 0.924 15 C -0.007 4.007 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.252 1.252 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.063 4.063 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.099 4.099 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.124 0.876 28 H 0.143 0.857 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.422 0.578 33 H 0.106 0.894 34 H 0.107 0.893 35 H -0.018 1.018 36 H -0.016 1.016 37 H 0.262 0.738 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -20.905 13.869 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.237 6.237 3 C 0.071 3.929 4 C -0.225 4.225 5 C -0.062 4.062 6 C -0.159 4.159 7 C -0.005 4.005 8 N -0.311 5.311 9 C 0.301 3.699 10 O -0.440 6.440 11 C -0.157 4.157 12 C 0.007 3.993 13 C -0.579 4.579 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.796 3.204 18 H -0.176 1.176 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.065 4.065 22 C -0.171 4.171 23 C -0.126 4.126 24 C -0.155 4.155 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.161 0.839 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.262 0.738 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.000 1.000 36 H 0.002 0.998 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.610 -21.172 13.114 24.912 hybrid contribution -0.308 1.358 -0.350 1.436 sum 0.302 -19.813 12.764 23.571 Atomic orbital electron populations 1.23314 0.76900 1.05546 1.01843 1.86032 1.22931 1.26003 1.88713 1.18876 0.92127 0.84353 0.97590 1.21046 1.00736 0.90903 1.09801 1.19783 0.93068 0.95428 0.97874 1.20749 0.99182 0.94248 1.01672 1.17460 0.90910 0.85407 1.06711 1.43368 1.42132 1.12020 1.33588 1.21444 0.81084 0.87304 0.80023 1.90683 1.35598 1.80965 1.36794 1.21644 1.01966 0.89862 1.02197 1.18670 0.94636 0.93629 0.92395 1.21740 1.25398 0.97750 1.12967 0.90583 1.26121 0.95624 1.03767 0.94928 1.70184 1.34742 1.36221 1.16585 0.85294 0.78329 0.78228 0.78525 1.17561 1.20714 1.20711 1.19775 0.97559 0.90101 0.99069 1.20888 0.88469 1.03721 1.04023 1.19212 0.90760 0.96147 1.06468 1.20660 0.98977 0.92726 1.03120 0.91850 0.92770 0.85802 0.83918 0.92547 0.90106 0.93045 0.73848 0.87618 0.87517 0.99976 0.99762 0.92922 0.88462 0.89368 0.91902 0.90092 0.91609 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.32 -7.05 9.53 -93.24 -0.89 -7.94 16 3 C 0.12 2.96 6.66 22.50 0.15 3.11 16 4 C -0.21 -5.56 8.72 22.35 0.19 -5.37 16 5 C -0.06 -1.86 5.48 -19.75 -0.11 -1.97 16 6 C -0.10 -3.34 8.22 71.24 0.59 -2.75 16 7 C 0.09 2.64 5.84 38.11 0.22 2.86 16 8 N -0.66 -19.09 3.91 -303.40 -1.19 -20.28 16 9 C 0.51 19.72 5.96 87.66 0.52 20.24 16 10 O -0.56 -27.26 13.06 -3.06 -0.04 -27.30 16 11 C -0.12 -4.60 5.64 29.84 0.17 -4.44 16 12 C 0.04 2.44 4.26 29.85 0.13 2.57 16 13 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 14 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 15 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 16 N -0.94 -59.39 13.29 21.45 0.28 -59.10 16 17 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 18 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 C -0.06 -1.57 5.89 -19.76 -0.12 -1.69 16 22 C -0.11 -2.06 9.25 71.23 0.66 -1.40 16 23 C -0.12 -3.00 5.89 -19.78 -0.12 -3.12 16 24 C -0.10 -1.72 9.38 71.23 0.67 -1.05 16 25 H 0.06 0.80 7.66 -2.39 -0.02 0.79 16 26 H 0.05 0.80 7.66 -2.38 -0.02 0.78 16 27 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.14 3.23 6.29 -2.91 -0.02 3.21 16 29 H 0.06 2.20 7.09 -2.39 -0.02 2.18 16 30 H 0.08 2.14 8.13 -2.38 -0.02 2.12 16 31 H 0.05 1.76 6.15 -2.39 -0.01 1.74 16 32 H 0.42 8.82 8.67 -92.70 -0.80 8.01 16 33 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16 35 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 36 H -0.02 -1.00 8.10 -2.38 -0.02 -1.02 16 37 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.33 5.94 -2.39 -0.01 1.31 16 40 H 0.06 1.24 7.44 -2.39 -0.02 1.22 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.18 7.52 -2.38 -0.02 1.17 16 43 H 0.08 1.18 5.94 -2.39 -0.01 1.17 16 Total: -1.00 -78.08 347.69 5.18 -72.90 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.22 Total: 17.35 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 4.76 Total: -21.85 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -0.90 Total: -79.38 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.93 Total: -35.24 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -78.08 5.18 -72.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362247303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.581 kcal (2) G-P(sol) polarization free energy of solvation -78.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds