Wall clock time and date at job start Tue Mar 31 2020 07:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.82242 * 2 1 4 4 C 1.54493 * 109.82159 * 239.02636 * 2 1 3 5 5 C 1.55303 * 102.20103 * 261.83602 * 4 2 1 6 6 H 1.08999 * 111.12586 * 83.81082 * 5 4 2 7 7 N 1.46902 * 111.12726 * 207.93656 * 5 4 2 8 8 C 1.46900 * 110.99766 * 201.50581 * 7 5 4 9 9 C 1.50708 * 109.46914 * 179.97438 * 8 7 5 10 10 C 1.38321 * 119.96419 * 89.99619 * 9 8 7 11 11 C 1.38282 * 120.13710 * 180.02562 * 10 9 8 12 12 C 1.38128 * 120.06769 * 359.97438 * 11 10 9 13 13 C 1.38857 * 119.92958 * 0.02562 * 12 11 10 14 14 O 1.35747 * 120.07066 * 180.02562 * 13 12 11 15 15 C 1.34836 * 116.99665 * 354.46438 * 14 13 12 16 16 H 1.07999 * 120.00037 * 5.06016 * 15 14 13 17 17 C 1.38657 * 119.99999 * 185.05754 * 15 14 13 18 18 N 1.31551 * 119.99915 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99776 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47054 * 90.00361 * 19 17 15 21 21 H 1.48506 * 109.47071 * 210.00035 * 19 17 15 22 22 H 1.48496 * 109.47190 * 329.99993 * 19 17 15 23 23 C 1.38076 * 119.96075 * 269.72060 * 9 8 7 24 24 C 1.54946 * 100.97956 * 325.86942 * 5 4 2 25 25 O 1.43233 * 109.82594 * 120.88454 * 2 1 3 26 26 H 1.08998 * 109.47473 * 300.57387 * 1 2 3 27 27 H 1.09002 * 109.46888 * 60.56890 * 1 2 3 28 28 H 1.08995 * 109.47473 * 180.56727 * 1 2 3 29 29 H 1.09001 * 109.47040 * 179.43177 * 3 2 1 30 30 H 1.09001 * 109.46951 * 299.42781 * 3 2 1 31 31 H 1.08996 * 109.47437 * 59.43147 * 3 2 1 32 32 H 1.09003 * 110.85264 * 143.67132 * 4 2 1 33 33 H 1.08997 * 110.89680 * 20.01792 * 4 2 1 34 34 H 1.00907 * 110.99432 * 325.45105 * 7 5 4 35 35 H 1.09007 * 109.46900 * 299.99093 * 8 7 5 36 36 H 1.08997 * 109.47677 * 59.99188 * 8 7 5 37 37 H 1.07998 * 119.93366 * 359.97438 * 10 9 8 38 38 H 1.08003 * 119.96680 * 180.02562 * 11 10 9 39 39 H 1.07999 * 120.03435 * 180.02562 * 12 11 10 40 40 H 0.97002 * 119.99806 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.03933 * 0.02562 * 23 9 8 42 42 H 1.08997 * 110.31118 * 155.37934 * 24 5 4 43 43 H 1.09002 * 110.31212 * 277.54971 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 2.0539 -0.7480 -1.2461 5 6 2.3680 -2.1576 -0.6749 6 1 1.4729 -2.7791 -0.6483 7 7 3.4399 -2.8112 -1.4377 8 6 3.3987 -4.2689 -1.2603 9 6 4.5101 -4.9033 -2.0562 10 6 5.7502 -5.0998 -1.4760 11 6 6.7727 -5.6812 -2.2032 12 6 6.5581 -6.0680 -3.5117 13 6 5.3142 -5.8721 -4.0970 14 8 5.1000 -6.2517 -5.3825 15 6 6.1656 -6.7067 -6.0721 16 1 7.1162 -6.8335 -5.5753 17 6 6.0411 -7.0119 -7.4189 18 7 7.0809 -7.4553 -8.0917 19 14 4.3968 -6.7933 -8.2779 20 1 4.3084 -5.4199 -8.8358 21 1 4.2778 -7.7832 -9.3785 22 1 3.2970 -7.0031 -7.3024 23 6 4.2875 -5.2931 -3.3620 24 6 2.8406 -1.7975 0.7561 25 8 2.0158 -0.6916 1.1564 26 1 -0.3634 0.5227 0.8848 27 1 -0.3633 0.5050 -0.8951 28 1 -0.3634 -1.0275 0.0102 29 1 3.1388 1.4326 0.0102 30 1 1.6970 1.9523 -0.8951 31 1 1.6804 1.9584 0.8848 32 1 2.9575 -0.2752 -1.6311 33 1 1.2856 -0.8043 -2.0173 34 1 3.3906 -2.5643 -2.4148 35 1 3.5238 -4.5101 -0.2047 36 1 2.4390 -4.6504 -1.6089 37 1 5.9206 -4.7978 -0.4532 38 1 7.7398 -5.8337 -1.7473 39 1 7.3569 -6.5224 -4.0790 40 1 6.9937 -7.6692 -9.0338 41 1 3.3178 -5.1431 -3.8132 42 1 2.6918 -2.6430 1.4276 43 1 3.8899 -1.5024 0.7449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396662169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:18 Heat of formation + Delta-G solvation = -52.844555 kcal Electronic energy + Delta-G solvation = -22637.038048 eV Core-core repulsion = 19261.590576 eV Total energy + Delta-G solvation = -3375.447472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17479 -39.23403 -37.16201 -35.46204 -33.41033 -32.41675 -31.61006 -29.56918 -28.70241 -27.63506 -26.02682 -25.40497 -24.53229 -21.73029 -21.25971 -20.60436 -20.12748 -17.75279 -17.25726 -16.70936 -16.07452 -15.40194 -15.24125 -15.14314 -14.59691 -14.36111 -14.16998 -13.82064 -13.68960 -13.66647 -13.51470 -12.97468 -12.70346 -12.52411 -12.43694 -12.25523 -11.99996 -11.90813 -11.84300 -11.35881 -11.30914 -11.15327 -10.85348 -10.82921 -10.75630 -10.61581 -10.18320 -9.73899 -9.41913 -8.89839 -8.61914 -8.19378 -7.39633 -6.43373 -4.10519 1.97461 2.25514 3.19443 3.22967 3.37159 3.50319 4.01462 4.19397 4.21286 4.52600 4.54521 4.61428 4.75554 4.85345 4.94839 5.03863 5.07542 5.14897 5.30552 5.36250 5.41310 5.43302 5.51714 5.57693 5.61975 5.64215 5.70741 5.71470 5.80261 5.86400 5.90338 6.00692 6.09641 6.21424 6.49021 6.73924 6.81110 6.95931 7.06226 7.19787 7.27960 7.29156 7.57855 7.78217 8.01947 8.91933 9.54134 10.64449 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.003028 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.143001 B = 9245.873233 C =10075.542888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 C -0.154 4.154 4 C -0.149 4.149 5 C 0.051 3.949 6 H 0.061 0.939 7 N -0.670 5.670 8 C 0.105 3.895 9 C -0.051 4.051 10 C -0.180 4.180 11 C -0.078 4.078 12 C -0.217 4.217 13 C 0.158 3.842 14 O -0.219 6.219 15 C -0.390 4.390 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.185 4.185 24 C 0.061 3.939 25 O -0.376 6.376 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.350 0.650 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.279 0.721 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 12.758 14.798 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.064 3.936 3 C -0.211 4.211 4 C -0.187 4.187 5 C -0.059 4.059 6 H 0.079 0.921 7 N -0.303 5.303 8 C -0.023 4.023 9 C -0.052 4.052 10 C -0.199 4.199 11 C -0.096 4.096 12 C -0.237 4.237 13 C 0.106 3.894 14 O -0.125 6.125 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.518 5.518 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.185 1.185 23 C -0.205 4.205 24 C -0.016 4.016 25 O -0.295 6.295 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.169 0.831 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.099 0.901 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.458 12.832 15.135 22.430 hybrid contribution -1.073 -0.380 -1.309 1.735 sum -11.532 12.452 13.826 21.890 Atomic orbital electron populations 1.22090 0.94138 1.02496 1.02313 1.21996 0.93974 0.92594 0.85063 1.22096 1.01803 0.94983 1.02234 1.23386 1.02529 0.95012 0.97798 1.23209 0.93157 0.94679 0.94885 0.92089 1.60450 1.46074 1.08056 1.15724 1.20875 0.95455 0.86317 0.99631 1.19128 0.94598 0.98327 0.93114 1.20488 0.93245 1.06366 0.99824 1.20815 0.98041 0.96985 0.93792 1.21324 0.98359 1.07731 0.96249 1.19035 0.92963 0.92288 0.85065 1.83567 1.36944 1.72154 1.19787 1.20762 0.89684 1.43319 0.92773 0.87638 1.24458 0.98673 0.95692 0.95161 1.69644 1.29561 1.42701 1.09914 0.86185 0.83333 0.78291 0.79089 1.19903 1.20782 1.18455 1.20018 0.98633 1.07493 0.94313 1.23368 0.95277 0.88754 0.94211 1.88432 1.67499 1.43778 1.29818 0.91915 0.91549 0.92220 0.91965 0.91575 0.91986 0.89262 0.90026 0.83063 0.90417 0.94485 0.87370 0.87148 0.85002 0.91052 0.86961 0.90144 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.73 37.16 0.32 -0.87 16 2 C 0.10 0.94 1.27 -89.84 -0.11 0.83 16 3 C -0.15 -1.24 8.75 37.16 0.33 -0.91 16 4 C -0.15 -1.33 5.55 -24.73 -0.14 -1.46 16 5 C 0.05 0.51 3.39 -65.46 -0.22 0.29 16 6 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 7 N -0.67 -7.84 6.39 -105.61 -0.67 -8.51 16 8 C 0.11 1.34 5.70 -4.97 -0.03 1.31 16 9 C -0.05 -0.83 5.39 -104.65 -0.56 -1.40 16 10 C -0.18 -2.96 9.70 -39.53 -0.38 -3.35 16 11 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 12 C -0.22 -4.64 9.17 -39.39 -0.36 -5.00 16 13 C 0.16 3.60 6.65 -39.10 -0.26 3.34 16 14 O -0.22 -5.72 8.59 0.04 0.00 -5.72 16 15 C -0.39 -10.92 9.95 30.89 0.31 -10.61 16 16 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.34 13.96 55.48 0.77 -24.56 16 19 Si 0.91 21.50 28.62 -169.99 -4.86 16.64 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.26 -6.20 7.11 56.52 0.40 -5.79 16 23 C -0.18 -3.54 9.64 -39.39 -0.38 -3.92 16 24 C 0.06 0.64 7.48 38.18 0.29 0.93 16 25 O -0.38 -4.27 10.68 -35.23 -0.38 -4.64 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 33 H 0.08 0.64 7.83 -51.93 -0.41 0.23 16 34 H 0.35 4.17 8.49 -39.29 -0.33 3.83 16 35 H 0.08 0.91 8.09 -51.92 -0.42 0.49 16 36 H 0.04 0.45 8.03 -51.93 -0.42 0.03 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.13 2.97 5.64 -52.49 -0.30 2.67 16 40 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -29.26 353.29 -8.28 -37.53 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.76 Total: 4.90 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.70 Total: -20.95 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.10 Total: -33.08 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.38 Total: -10.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.26 -8.28 -37.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396662169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.311 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds