Wall clock time and date at job start Tue Mar 31 2020 07:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.82242 * 2 1 4 4 C 1.54493 * 109.82159 * 239.02636 * 2 1 3 5 5 C 1.55303 * 102.20103 * 261.83602 * 4 2 1 6 6 H 1.08999 * 111.12586 * 83.81082 * 5 4 2 7 7 N 1.46902 * 111.12726 * 207.93656 * 5 4 2 8 8 C 1.46900 * 110.99766 * 201.50581 * 7 5 4 9 9 C 1.50708 * 109.46914 * 179.97438 * 8 7 5 10 10 C 1.38321 * 119.96419 * 89.99619 * 9 8 7 11 11 C 1.38282 * 120.13710 * 180.02562 * 10 9 8 12 12 C 1.38128 * 120.06769 * 359.97438 * 11 10 9 13 13 C 1.38857 * 119.92958 * 0.02562 * 12 11 10 14 14 O 1.35747 * 120.07066 * 180.02562 * 13 12 11 15 15 C 1.34836 * 116.99665 * 354.46438 * 14 13 12 16 16 H 1.07999 * 120.00037 * 5.06016 * 15 14 13 17 17 C 1.38657 * 119.99999 * 185.05754 * 15 14 13 18 18 N 1.31551 * 119.99915 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99776 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47054 * 90.00361 * 19 17 15 21 21 H 1.48506 * 109.47071 * 210.00035 * 19 17 15 22 22 H 1.48496 * 109.47190 * 329.99993 * 19 17 15 23 23 C 1.38076 * 119.96075 * 269.72060 * 9 8 7 24 24 C 1.54946 * 100.97956 * 325.86942 * 5 4 2 25 25 O 1.43233 * 109.82594 * 120.88454 * 2 1 3 26 26 H 1.08998 * 109.47473 * 300.57387 * 1 2 3 27 27 H 1.09002 * 109.46888 * 60.56890 * 1 2 3 28 28 H 1.08995 * 109.47473 * 180.56727 * 1 2 3 29 29 H 1.09001 * 109.47040 * 179.43177 * 3 2 1 30 30 H 1.09001 * 109.46951 * 299.42781 * 3 2 1 31 31 H 1.08996 * 109.47437 * 59.43147 * 3 2 1 32 32 H 1.09003 * 110.85264 * 143.67132 * 4 2 1 33 33 H 1.08997 * 110.89680 * 20.01792 * 4 2 1 34 34 H 1.00907 * 110.99432 * 325.45105 * 7 5 4 35 35 H 1.09007 * 109.46900 * 299.99093 * 8 7 5 36 36 H 1.08997 * 109.47677 * 59.99188 * 8 7 5 37 37 H 1.07998 * 119.93366 * 359.97438 * 10 9 8 38 38 H 1.08003 * 119.96680 * 180.02562 * 11 10 9 39 39 H 1.07999 * 120.03435 * 180.02562 * 12 11 10 40 40 H 0.97002 * 119.99806 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.03933 * 0.02562 * 23 9 8 42 42 H 1.08997 * 110.31118 * 155.37934 * 24 5 4 43 43 H 1.09002 * 110.31212 * 277.54971 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 2.0539 -0.7480 -1.2461 5 6 2.3680 -2.1576 -0.6749 6 1 1.4729 -2.7791 -0.6483 7 7 3.4399 -2.8112 -1.4377 8 6 3.3987 -4.2689 -1.2603 9 6 4.5101 -4.9033 -2.0562 10 6 5.7502 -5.0998 -1.4760 11 6 6.7727 -5.6812 -2.2032 12 6 6.5581 -6.0680 -3.5117 13 6 5.3142 -5.8721 -4.0970 14 8 5.1000 -6.2517 -5.3825 15 6 6.1656 -6.7067 -6.0721 16 1 7.1162 -6.8335 -5.5753 17 6 6.0411 -7.0119 -7.4189 18 7 7.0809 -7.4553 -8.0917 19 14 4.3968 -6.7933 -8.2779 20 1 4.3084 -5.4199 -8.8358 21 1 4.2778 -7.7832 -9.3785 22 1 3.2970 -7.0031 -7.3024 23 6 4.2875 -5.2931 -3.3620 24 6 2.8406 -1.7975 0.7561 25 8 2.0158 -0.6916 1.1564 26 1 -0.3634 0.5227 0.8848 27 1 -0.3633 0.5050 -0.8951 28 1 -0.3634 -1.0275 0.0102 29 1 3.1388 1.4326 0.0102 30 1 1.6970 1.9523 -0.8951 31 1 1.6804 1.9584 0.8848 32 1 2.9575 -0.2752 -1.6311 33 1 1.2856 -0.8043 -2.0173 34 1 3.3906 -2.5643 -2.4148 35 1 3.5238 -4.5101 -0.2047 36 1 2.4390 -4.6504 -1.6089 37 1 5.9206 -4.7978 -0.4532 38 1 7.7398 -5.8337 -1.7473 39 1 7.3569 -6.5224 -4.0790 40 1 6.9937 -7.6692 -9.0338 41 1 3.3178 -5.1431 -3.8132 42 1 2.6918 -2.6430 1.4276 43 1 3.8899 -1.5024 0.7449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396662169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:18 Heat of formation + Delta-G solvation = -71.208187 kcal Electronic energy + Delta-G solvation = -22637.834355 eV Core-core repulsion = 19261.590576 eV Total energy + Delta-G solvation = -3376.243779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03825 -40.77468 -38.69028 -36.56150 -34.46125 -34.11284 -32.80221 -31.08180 -29.87599 -28.23655 -27.28932 -26.75561 -25.80653 -23.24424 -22.17144 -22.02952 -20.86984 -19.65644 -18.92438 -17.49951 -16.99782 -16.82964 -16.62394 -16.05616 -15.97631 -15.68811 -15.61491 -15.20382 -14.97373 -14.46021 -14.41327 -14.32744 -14.16900 -13.98745 -13.44245 -13.24906 -13.07180 -12.99612 -12.79518 -12.53749 -12.49073 -12.41647 -12.23736 -11.99318 -11.92159 -11.85067 -11.47117 -11.27724 -10.91334 -10.49742 -9.77583 -9.42747 -9.06772 -8.50169 -6.23146 0.47753 0.70324 1.30793 1.35015 1.51143 2.27463 2.65882 2.81769 2.99917 3.13991 3.30857 3.51034 3.82679 3.92892 3.95777 4.07797 4.18439 4.22633 4.24942 4.34319 4.45092 4.59051 4.65346 4.70423 4.74091 4.76990 4.77515 4.82533 4.93430 4.95688 4.97339 4.99900 5.04513 5.25455 5.27845 5.38716 5.39969 5.67264 5.75639 5.76758 5.91246 5.96199 6.17545 6.25679 6.32874 6.84246 7.58703 8.61649 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.003028 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.143001 B = 9245.873233 C =10075.542888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.096 3.904 3 C -0.153 4.153 4 C -0.145 4.145 5 C 0.056 3.944 6 H 0.068 0.932 7 N -0.674 5.674 8 C 0.111 3.889 9 C -0.040 4.040 10 C -0.161 4.161 11 C -0.078 4.078 12 C -0.239 4.239 13 C 0.119 3.881 14 O -0.246 6.246 15 C -0.399 4.399 16 H 0.080 0.920 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.268 1.268 22 H -0.263 1.263 23 C -0.182 4.182 24 C 0.061 3.939 25 O -0.395 6.395 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.349 0.651 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.106 0.894 40 H 0.285 0.715 41 H 0.124 0.876 42 H 0.088 0.912 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.896 14.255 16.708 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.057 3.943 3 C -0.210 4.210 4 C -0.183 4.183 5 C -0.055 4.055 6 H 0.086 0.914 7 N -0.307 5.307 8 C -0.018 4.018 9 C -0.041 4.041 10 C -0.179 4.179 11 C -0.096 4.096 12 C -0.258 4.258 13 C 0.071 3.929 14 O -0.154 6.154 15 C -0.475 4.475 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.193 1.193 22 H -0.187 1.187 23 C -0.202 4.202 24 C -0.016 4.016 25 O -0.314 6.314 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.168 0.832 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.106 0.894 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.605 14.348 17.093 25.630 hybrid contribution -0.377 -0.717 -1.549 1.748 sum -12.982 13.632 15.544 24.412 Atomic orbital electron populations 1.22086 0.93127 1.02553 1.03068 1.22190 0.94796 0.92835 0.84487 1.22099 1.01277 0.94645 1.03005 1.23375 1.02772 0.94189 0.97982 1.23180 0.92722 0.95140 0.94413 0.91438 1.60404 1.47120 1.07322 1.15867 1.20872 0.94243 0.86746 0.99891 1.19558 0.95812 0.96623 0.92058 1.20987 0.92417 1.03480 1.01055 1.21136 0.99990 0.96153 0.92305 1.21340 0.97584 1.08981 0.97899 1.19593 0.94726 0.94147 0.84462 1.83506 1.36018 1.74409 1.21417 1.20699 0.89648 1.43793 0.93396 0.90270 1.25289 1.02339 0.95560 0.95725 1.69731 1.31595 1.44725 1.10526 0.85203 0.78598 0.78821 0.77984 1.18990 1.19286 1.18694 1.20295 0.98164 1.06532 0.95187 1.23368 0.94752 0.88865 0.94652 1.88419 1.67698 1.44196 1.31115 0.92054 0.89977 0.92472 0.92771 0.90040 0.92041 0.89673 0.88729 0.83189 0.88542 0.93464 0.83747 0.84376 0.87618 0.90587 0.85838 0.89409 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.73 71.98 0.63 -1.35 16 2 C 0.10 1.53 1.27 -10.29 -0.01 1.52 16 3 C -0.15 -2.16 8.75 71.98 0.63 -1.53 16 4 C -0.15 -2.19 5.55 31.89 0.18 -2.01 16 5 C 0.06 0.94 3.39 46.37 0.16 1.10 16 6 H 0.07 1.10 7.88 -2.39 -0.02 1.08 16 7 N -0.67 -13.47 6.39 -488.05 -3.12 -16.59 16 8 C 0.11 2.36 5.70 85.56 0.49 2.85 16 9 C -0.04 -1.18 5.39 -19.88 -0.11 -1.28 16 10 C -0.16 -4.70 9.70 22.30 0.22 -4.48 16 11 C -0.08 -2.66 10.04 22.25 0.22 -2.43 16 12 C -0.24 -10.47 9.17 22.39 0.21 -10.27 16 13 C 0.12 5.53 6.65 22.58 0.15 5.68 16 14 O -0.25 -13.29 8.59 -22.76 -0.20 -13.49 16 15 C -0.40 -23.57 9.95 67.92 0.68 -22.89 16 16 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 17 C 0.01 0.52 5.49 84.83 0.47 0.99 16 18 N -0.92 -55.43 13.96 21.61 0.30 -55.13 16 19 Si 0.97 45.22 28.62 68.60 1.96 47.19 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 C -0.18 -6.73 9.64 22.39 0.22 -6.51 16 24 C 0.06 1.12 7.48 72.65 0.54 1.66 16 25 O -0.39 -8.14 10.68 -148.98 -1.59 -9.73 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.08 1.36 7.85 -2.39 -0.02 1.34 16 33 H 0.09 1.18 7.83 -2.39 -0.02 1.16 16 34 H 0.35 7.26 8.49 -89.69 -0.76 6.50 16 35 H 0.10 1.77 8.09 -2.38 -0.02 1.75 16 36 H 0.05 0.95 8.03 -2.39 -0.02 0.93 16 37 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 39 H 0.11 5.14 5.64 -2.91 -0.02 5.12 16 40 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -65.96 353.29 2.25 -63.71 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.24 Total: 23.01 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 4.66 Total: -38.98 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -2.82 Total: -71.72 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -1.79 Total: -23.22 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.96 Total: 47.19 kcal Total: -65.96 2.25 -63.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396662169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.496 kcal (2) G-P(sol) polarization free energy of solvation -65.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds