Wall clock time and date at job start Tue Mar 31 2020 07:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.87062 * 2 1 4 4 C 1.54163 * 109.89932 * 238.85892 * 2 1 3 5 5 C 1.54809 * 104.15692 * 242.63349 * 4 2 1 6 6 H 1.08996 * 110.91003 * 262.62326 * 5 4 2 7 7 N 1.46899 * 110.90669 * 139.05502 * 5 4 2 8 8 C 1.46904 * 111.00155 * 157.92885 * 7 5 4 9 9 C 1.50700 * 109.47383 * 180.02562 * 8 7 5 10 10 C 1.38321 * 119.96449 * 269.72214 * 9 8 7 11 11 C 1.38278 * 120.14166 * 179.76154 * 10 9 8 12 12 C 1.38126 * 120.06462 * 0.51640 * 11 10 9 13 13 C 1.38857 * 119.93230 * 359.73958 * 12 11 10 14 14 O 1.35748 * 120.07178 * 179.97438 * 13 12 11 15 15 C 1.34831 * 116.99622 * 354.48540 * 14 13 12 16 16 H 1.08003 * 119.99995 * 5.06110 * 15 14 13 17 17 C 1.38655 * 119.99762 * 185.06419 * 15 14 13 18 18 N 1.31561 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99826 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47090 * 89.99788 * 19 17 15 21 21 H 1.48504 * 109.47084 * 209.99597 * 19 17 15 22 22 H 1.48500 * 109.46926 * 329.99341 * 19 17 15 23 23 C 1.38077 * 119.96668 * 89.99255 * 9 8 7 24 24 C 1.55000 * 102.12328 * 20.84447 * 5 4 2 25 25 O 1.43739 * 109.88043 * 121.00783 * 2 1 3 26 26 H 1.09001 * 109.46956 * 300.44557 * 1 2 3 27 27 H 1.09001 * 109.47079 * 60.44564 * 1 2 3 28 28 H 1.08993 * 109.47097 * 180.45084 * 1 2 3 29 29 H 1.08997 * 109.46745 * 179.55274 * 3 2 1 30 30 H 1.08998 * 109.46868 * 299.55459 * 3 2 1 31 31 H 1.09003 * 109.46846 * 59.55334 * 3 2 1 32 32 H 1.08993 * 110.52258 * 123.95719 * 4 2 1 33 33 H 1.09003 * 110.47963 * 1.29173 * 4 2 1 34 34 H 1.00902 * 111.00020 * 33.97720 * 7 5 4 35 35 H 1.09005 * 109.46717 * 300.00061 * 8 7 5 36 36 H 1.08997 * 109.47146 * 59.99560 * 8 7 5 37 37 H 1.08008 * 119.92778 * 0.02562 * 10 9 8 38 38 H 1.07998 * 119.96764 * 180.25059 * 11 10 9 39 39 H 1.08003 * 120.03442 * 179.71746 * 12 11 10 40 40 H 0.97000 * 119.99930 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.03491 * 359.96756 * 23 9 8 42 42 H 1.08990 * 110.62106 * 81.49638 * 24 5 4 43 43 H 1.09006 * 110.61347 * 204.33686 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0548 -0.7496 -1.2407 5 6 2.8325 -1.9533 -0.6550 6 1 3.9004 -1.7405 -0.6076 7 7 2.5774 -3.1718 -1.4348 8 6 3.6545 -4.1527 -1.2462 9 6 3.3590 -5.3861 -2.0601 10 6 2.6365 -6.4253 -1.5021 11 6 2.3589 -7.5567 -2.2472 12 6 2.8119 -7.6567 -3.5482 13 6 3.5420 -6.6175 -4.1095 14 8 3.9891 -6.7130 -5.3877 15 6 3.7899 -7.8874 -6.0196 16 1 3.2228 -8.6703 -5.5380 17 6 4.3132 -8.0898 -7.2875 18 7 5.0036 -7.1359 -7.8743 19 14 4.0367 -9.7165 -8.1633 20 1 2.7867 -9.6427 -8.9615 21 1 5.1837 -9.9948 -9.0644 22 1 3.9199 -10.8051 -7.1600 23 6 3.8144 -5.4801 -3.3602 24 6 2.2280 -2.0703 0.7675 25 8 2.0189 -0.6963 1.1586 26 1 -0.3633 0.5207 0.8860 27 1 -0.3633 0.5069 -0.8940 28 1 -0.3633 -1.0276 0.0081 29 1 3.1400 1.4313 0.0080 30 1 1.6969 1.9529 -0.8939 31 1 1.6838 1.9576 0.8860 32 1 2.7210 -0.1104 -1.8200 33 1 1.2247 -1.0951 -1.8569 34 1 2.4521 -2.9558 -2.4124 35 1 4.6006 -3.7206 -1.5724 36 1 3.7217 -4.4203 -0.1917 37 1 2.2847 -6.3511 -0.4836 38 1 1.7911 -8.3646 -1.8100 39 1 2.5988 -8.5425 -4.1282 40 1 5.3694 -7.2775 -8.7614 41 1 4.3818 -4.6700 -3.7940 42 1 1.2814 -2.6098 0.7391 43 1 2.9284 -2.5618 1.4428 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396662170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:21 Heat of formation + Delta-G solvation = -54.213036 kcal Electronic energy + Delta-G solvation = -22596.331382 eV Core-core repulsion = 19220.824567 eV Total energy + Delta-G solvation = -3375.506814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12809 -39.06483 -36.98562 -35.35724 -33.29441 -32.31142 -31.49486 -29.35806 -28.51615 -27.63576 -26.00319 -25.47852 -24.42809 -21.60475 -21.05602 -20.70377 -20.19360 -17.70142 -17.04938 -16.46512 -16.01960 -15.35921 -15.23444 -15.03482 -14.46946 -14.40007 -14.24750 -13.93810 -13.59467 -13.45355 -13.34764 -12.92153 -12.58441 -12.43261 -12.41223 -12.01018 -11.89031 -11.80698 -11.63911 -11.29934 -11.27196 -11.06973 -10.85314 -10.73890 -10.66275 -10.57044 -10.41634 -9.82612 -9.35415 -8.84973 -8.52441 -8.09096 -7.23950 -6.45605 -4.04947 2.07929 2.37899 3.11922 3.13004 3.17730 3.61732 3.95772 4.15771 4.31781 4.54153 4.62662 4.67191 4.88399 5.01492 5.07729 5.08616 5.19504 5.27504 5.35819 5.44139 5.46514 5.52018 5.59868 5.63690 5.66457 5.72229 5.78092 5.80768 5.86372 5.93093 5.96322 6.05455 6.18241 6.31447 6.63752 6.75554 6.89116 7.02668 7.06030 7.23913 7.36902 7.38867 7.42305 7.81220 7.99373 9.00339 9.70380 10.72589 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.002740 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.849742 B =10216.924076 C =10731.666810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 C -0.143 4.143 4 C -0.150 4.150 5 C 0.052 3.948 6 H 0.060 0.940 7 N -0.671 5.671 8 C 0.105 3.895 9 C -0.048 4.048 10 C -0.189 4.189 11 C -0.077 4.077 12 C -0.231 4.231 13 C 0.153 3.847 14 O -0.180 6.180 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.185 4.185 24 C 0.057 3.943 25 O -0.372 6.372 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.349 0.651 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.270 0.730 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 11.238 13.808 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.061 3.939 3 C -0.201 4.201 4 C -0.188 4.188 5 C -0.058 4.058 6 H 0.078 0.922 7 N -0.304 5.304 8 C -0.023 4.023 9 C -0.049 4.049 10 C -0.208 4.208 11 C -0.095 4.095 12 C -0.250 4.250 13 C 0.099 3.901 14 O -0.084 6.084 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.205 4.205 24 C -0.020 4.020 25 O -0.291 6.291 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.130 0.870 42 H 0.089 0.911 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.921 11.267 14.118 19.008 hybrid contribution 0.500 -0.674 -1.228 1.487 sum -5.421 10.593 12.890 17.543 Atomic orbital electron populations 1.22248 0.94764 1.02757 1.02232 1.22028 0.93764 0.92969 0.85171 1.21909 1.01674 0.94147 1.02342 1.23215 1.00968 0.96600 0.98010 1.23088 0.98373 0.89520 0.94849 0.92203 1.60521 1.45076 1.10106 1.14738 1.20869 0.91692 0.90331 0.99406 1.19132 0.97967 0.94573 0.93224 1.20416 1.05481 0.95110 0.99791 1.20751 0.98035 0.96940 0.93805 1.21202 1.05852 1.01195 0.96759 1.19300 0.91948 0.93262 0.85566 1.83974 1.69356 1.35901 1.19144 1.21315 1.35214 0.90912 0.99348 0.89112 1.25278 0.95867 0.99314 0.96048 1.70038 1.32685 1.32391 1.14842 0.85721 0.78266 0.80221 0.79278 1.19884 1.20265 1.19209 1.20025 1.07923 0.98603 0.93911 1.23534 1.00656 0.83437 0.94360 1.88885 1.86061 1.21034 1.33093 0.92069 0.91657 0.91917 0.91975 0.91328 0.91959 0.90375 0.89404 0.83120 0.94471 0.90554 0.87606 0.87476 0.85642 0.92061 0.86958 0.91058 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.61 37.16 0.32 -1.10 16 2 C 0.10 0.97 1.19 -90.01 -0.11 0.86 16 3 C -0.14 -1.16 8.68 37.16 0.32 -0.84 16 4 C -0.15 -1.43 5.79 -25.17 -0.15 -1.58 16 5 C 0.05 0.56 3.43 -65.70 -0.23 0.34 16 6 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 7 N -0.67 -8.39 6.33 -105.87 -0.67 -9.06 16 8 C 0.11 1.44 5.69 -4.97 -0.03 1.41 16 9 C -0.05 -0.84 5.39 -104.65 -0.56 -1.40 16 10 C -0.19 -3.25 9.70 -39.54 -0.38 -3.64 16 11 C -0.08 -1.42 10.04 -39.61 -0.40 -1.81 16 12 C -0.23 -5.01 9.17 -39.39 -0.36 -5.37 16 13 C 0.15 3.66 6.65 -39.11 -0.26 3.40 16 14 O -0.18 -5.12 9.76 0.05 0.00 -5.11 16 15 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 16 H 0.09 2.35 5.20 -52.48 -0.27 2.07 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.29 13.67 55.48 0.76 -24.54 16 19 Si 0.94 20.48 29.55 -169.99 -5.02 15.45 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 23 C -0.18 -3.82 9.65 -39.39 -0.38 -4.20 16 24 C 0.06 0.63 7.35 38.21 0.28 0.91 16 25 O -0.37 -4.36 10.85 -35.23 -0.38 -4.75 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 33 H 0.09 0.85 7.53 -51.93 -0.39 0.45 16 34 H 0.35 4.49 8.40 -39.29 -0.33 4.16 16 35 H 0.04 0.50 8.03 -51.93 -0.42 0.08 16 36 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.13 2.73 5.64 -52.48 -0.30 2.44 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -30.26 353.85 -8.44 -38.70 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.72 Total: 6.66 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -1.73 Total: -22.68 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.09 Total: -33.60 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.38 Total: -9.86 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.26 -8.44 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396662170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.517 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds