Wall clock time and date at job start Tue Mar 31 2020 07:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.87062 * 2 1 4 4 C 1.54163 * 109.89932 * 238.85892 * 2 1 3 5 5 C 1.54809 * 104.15692 * 242.63349 * 4 2 1 6 6 H 1.08996 * 110.91003 * 262.62326 * 5 4 2 7 7 N 1.46899 * 110.90669 * 139.05502 * 5 4 2 8 8 C 1.46904 * 111.00155 * 157.92885 * 7 5 4 9 9 C 1.50700 * 109.47383 * 180.02562 * 8 7 5 10 10 C 1.38321 * 119.96449 * 269.72214 * 9 8 7 11 11 C 1.38278 * 120.14166 * 179.76154 * 10 9 8 12 12 C 1.38126 * 120.06462 * 0.51640 * 11 10 9 13 13 C 1.38857 * 119.93230 * 359.73958 * 12 11 10 14 14 O 1.35748 * 120.07178 * 179.97438 * 13 12 11 15 15 C 1.34831 * 116.99622 * 354.48540 * 14 13 12 16 16 H 1.08003 * 119.99995 * 5.06110 * 15 14 13 17 17 C 1.38655 * 119.99762 * 185.06419 * 15 14 13 18 18 N 1.31561 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99826 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47090 * 89.99788 * 19 17 15 21 21 H 1.48504 * 109.47084 * 209.99597 * 19 17 15 22 22 H 1.48500 * 109.46926 * 329.99341 * 19 17 15 23 23 C 1.38077 * 119.96668 * 89.99255 * 9 8 7 24 24 C 1.55000 * 102.12328 * 20.84447 * 5 4 2 25 25 O 1.43739 * 109.88043 * 121.00783 * 2 1 3 26 26 H 1.09001 * 109.46956 * 300.44557 * 1 2 3 27 27 H 1.09001 * 109.47079 * 60.44564 * 1 2 3 28 28 H 1.08993 * 109.47097 * 180.45084 * 1 2 3 29 29 H 1.08997 * 109.46745 * 179.55274 * 3 2 1 30 30 H 1.08998 * 109.46868 * 299.55459 * 3 2 1 31 31 H 1.09003 * 109.46846 * 59.55334 * 3 2 1 32 32 H 1.08993 * 110.52258 * 123.95719 * 4 2 1 33 33 H 1.09003 * 110.47963 * 1.29173 * 4 2 1 34 34 H 1.00902 * 111.00020 * 33.97720 * 7 5 4 35 35 H 1.09005 * 109.46717 * 300.00061 * 8 7 5 36 36 H 1.08997 * 109.47146 * 59.99560 * 8 7 5 37 37 H 1.08008 * 119.92778 * 0.02562 * 10 9 8 38 38 H 1.07998 * 119.96764 * 180.25059 * 11 10 9 39 39 H 1.08003 * 120.03442 * 179.71746 * 12 11 10 40 40 H 0.97000 * 119.99930 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.03491 * 359.96756 * 23 9 8 42 42 H 1.08990 * 110.62106 * 81.49638 * 24 5 4 43 43 H 1.09006 * 110.61347 * 204.33686 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0548 -0.7496 -1.2407 5 6 2.8325 -1.9533 -0.6550 6 1 3.9004 -1.7405 -0.6076 7 7 2.5774 -3.1718 -1.4348 8 6 3.6545 -4.1527 -1.2462 9 6 3.3590 -5.3861 -2.0601 10 6 2.6365 -6.4253 -1.5021 11 6 2.3589 -7.5567 -2.2472 12 6 2.8119 -7.6567 -3.5482 13 6 3.5420 -6.6175 -4.1095 14 8 3.9891 -6.7130 -5.3877 15 6 3.7899 -7.8874 -6.0196 16 1 3.2228 -8.6703 -5.5380 17 6 4.3132 -8.0898 -7.2875 18 7 5.0036 -7.1359 -7.8743 19 14 4.0367 -9.7165 -8.1633 20 1 2.7867 -9.6427 -8.9615 21 1 5.1837 -9.9948 -9.0644 22 1 3.9199 -10.8051 -7.1600 23 6 3.8144 -5.4801 -3.3602 24 6 2.2280 -2.0703 0.7675 25 8 2.0189 -0.6963 1.1586 26 1 -0.3633 0.5207 0.8860 27 1 -0.3633 0.5069 -0.8940 28 1 -0.3633 -1.0276 0.0081 29 1 3.1400 1.4313 0.0080 30 1 1.6969 1.9529 -0.8939 31 1 1.6838 1.9576 0.8860 32 1 2.7210 -0.1104 -1.8200 33 1 1.2247 -1.0951 -1.8569 34 1 2.4521 -2.9558 -2.4124 35 1 4.6006 -3.7206 -1.5724 36 1 3.7217 -4.4203 -0.1917 37 1 2.2847 -6.3511 -0.4836 38 1 1.7911 -8.3646 -1.8100 39 1 2.5988 -8.5425 -4.1282 40 1 5.3694 -7.2775 -8.7614 41 1 4.3818 -4.6700 -3.7940 42 1 1.2814 -2.6098 0.7391 43 1 2.9284 -2.5618 1.4428 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396662170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:21 Heat of formation + Delta-G solvation = -73.663111 kcal Electronic energy + Delta-G solvation = -22597.174800 eV Core-core repulsion = 19220.824567 eV Total energy + Delta-G solvation = -3376.350233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00855 -40.69826 -38.57928 -36.54172 -34.29418 -34.04870 -32.76180 -30.89801 -29.79082 -28.29839 -27.39176 -26.78236 -25.76247 -23.19168 -22.29985 -21.91596 -20.98444 -19.50803 -18.80817 -17.33076 -16.98858 -16.72435 -16.51898 -16.14577 -16.02714 -15.79653 -15.53847 -15.29387 -15.07448 -14.48255 -14.27750 -14.17514 -13.98250 -13.65196 -13.41406 -13.18114 -13.01024 -12.96509 -12.77539 -12.54209 -12.45405 -12.24338 -12.22541 -12.11030 -11.97103 -11.83956 -11.47322 -11.17506 -10.80278 -10.63631 -9.74632 -9.42517 -8.97676 -8.47043 -6.15337 0.51749 0.76542 1.34923 1.44108 1.52282 2.17635 2.71023 2.89099 3.13182 3.33079 3.45503 3.59400 3.79298 3.90667 3.98322 4.11038 4.15891 4.26728 4.29101 4.35108 4.46227 4.62043 4.64821 4.70920 4.74007 4.75446 4.77165 4.83981 4.92501 4.97076 4.98279 5.03272 5.06838 5.13790 5.26731 5.31953 5.37644 5.66004 5.74248 5.79660 5.89108 6.02968 6.10259 6.24478 6.30611 6.98088 7.79217 8.76297 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.002740 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.849742 B =10216.924076 C =10731.666810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.094 3.906 3 C -0.142 4.142 4 C -0.147 4.147 5 C 0.054 3.946 6 H 0.062 0.938 7 N -0.672 5.672 8 C 0.110 3.890 9 C -0.038 4.038 10 C -0.170 4.170 11 C -0.073 4.073 12 C -0.244 4.244 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.101 0.899 17 C -0.023 4.023 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.194 4.194 24 C 0.059 3.941 25 O -0.388 6.388 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.346 0.654 35 H 0.039 0.961 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.117 0.883 40 H 0.272 0.728 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 11.077 16.066 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 C -0.199 4.199 4 C -0.185 4.185 5 C -0.056 4.056 6 H 0.080 0.920 7 N -0.305 5.305 8 C -0.018 4.018 9 C -0.038 4.038 10 C -0.189 4.189 11 C -0.091 4.091 12 C -0.264 4.264 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.220 4.220 18 N -0.560 5.560 19 Si 0.837 3.163 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.177 1.177 23 C -0.214 4.214 24 C -0.018 4.018 25 O -0.308 6.308 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.165 0.835 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.171 11.122 16.440 21.104 hybrid contribution 0.790 -0.478 -1.601 1.848 sum -6.381 10.644 14.839 19.344 Atomic orbital electron populations 1.22235 0.94185 1.02381 1.02989 1.22209 0.94294 0.93538 0.84479 1.21921 1.01498 0.93321 1.03193 1.23215 1.00959 0.96260 0.98092 1.23089 0.98652 0.89133 0.94739 0.92049 1.60506 1.44418 1.10826 1.14735 1.20864 0.92157 0.89045 0.99737 1.19528 0.96205 0.96189 0.91892 1.20951 1.02985 0.93802 1.01118 1.21156 0.97285 0.98421 0.92257 1.21316 1.06277 1.00437 0.98363 1.19869 0.93460 0.95333 0.85078 1.83935 1.71994 1.36650 1.21490 1.21805 1.35633 0.91398 1.00045 0.88202 1.26571 0.95358 1.03514 0.96596 1.70183 1.35073 1.35159 1.15609 0.84600 0.78511 0.75170 0.78020 1.18794 1.19611 1.17701 1.20237 1.08323 0.97640 0.95228 1.23532 1.00594 0.83321 0.94399 1.88875 1.86281 1.21420 1.34189 0.91925 0.90340 0.92816 0.92249 0.89780 0.91864 0.89508 0.89500 0.83513 0.94233 0.88357 0.83768 0.83836 0.86535 0.91884 0.87506 0.91549 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 8.61 71.98 0.62 -1.89 16 2 C 0.09 1.63 1.19 -10.40 -0.01 1.62 16 3 C -0.14 -2.03 8.68 71.98 0.62 -1.40 16 4 C -0.15 -2.54 5.79 31.61 0.18 -2.35 16 5 C 0.05 1.05 3.43 46.22 0.16 1.21 16 6 H 0.06 1.20 7.87 -2.39 -0.02 1.18 16 7 N -0.67 -15.24 6.33 -488.86 -3.09 -18.33 16 8 C 0.11 2.71 5.69 85.56 0.49 3.20 16 9 C -0.04 -1.23 5.39 -19.88 -0.11 -1.33 16 10 C -0.17 -5.21 9.70 22.30 0.22 -4.99 16 11 C -0.07 -2.49 10.04 22.25 0.22 -2.27 16 12 C -0.24 -10.65 9.17 22.39 0.21 -10.44 16 13 C 0.11 5.59 6.65 22.58 0.15 5.74 16 14 O -0.23 -14.10 9.76 -22.73 -0.22 -14.32 16 15 C -0.41 -24.12 9.49 67.92 0.64 -23.47 16 16 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 17 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 18 N -0.92 -56.69 13.67 21.61 0.30 -56.39 16 19 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 20 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 23 C -0.19 -8.14 9.65 22.39 0.22 -7.92 16 24 C 0.06 1.15 7.35 72.67 0.53 1.68 16 25 O -0.39 -8.39 10.85 -148.98 -1.62 -10.01 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.34 7.70 -2.39 -0.02 1.32 16 33 H 0.09 1.52 7.53 -2.39 -0.02 1.50 16 34 H 0.35 8.38 8.40 -89.69 -0.75 7.63 16 35 H 0.04 0.98 8.03 -2.38 -0.02 0.96 16 36 H 0.10 2.04 8.08 -2.39 -0.02 2.03 16 37 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 39 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 41 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 43 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -69.37 353.85 2.24 -67.12 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.25 Total: 30.47 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 4.61 Total: -43.48 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -2.80 Total: -74.72 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -1.84 Total: -24.33 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -69.37 2.24 -67.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396662170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.540 kcal (2) G-P(sol) polarization free energy of solvation -69.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds