Wall clock time and date at job start Tue Mar 31 2020 07:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.82640 * 2 1 4 4 C 1.54382 * 109.82990 * 120.88672 * 2 1 3 5 5 C 1.55305 * 102.25341 * 98.15706 * 4 2 1 6 6 H 1.08998 * 111.12398 * 276.17560 * 5 4 2 7 7 N 1.46898 * 111.12609 * 152.05102 * 5 4 2 8 8 C 1.46903 * 110.99853 * 155.00004 * 7 5 4 9 9 C 1.50696 * 109.47151 * 180.02562 * 8 7 5 10 10 C 1.38302 * 119.93469 * 89.99796 * 9 8 7 11 11 C 1.38094 * 120.07461 * 180.02562 * 10 9 8 12 12 C 1.38878 * 119.92859 * 0.27306 * 11 10 9 13 13 O 1.35748 * 120.07147 * 179.72501 * 12 11 10 14 14 C 1.34830 * 117.00101 * 354.46447 * 13 12 11 15 15 H 1.07999 * 119.99626 * 5.05831 * 14 13 12 16 16 C 1.38650 * 120.00326 * 185.05731 * 14 13 12 17 17 N 1.31562 * 120.00209 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00130 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47103 * 89.99872 * 18 16 14 20 20 H 1.48501 * 109.47279 * 210.00176 * 18 16 14 21 21 H 1.48498 * 109.46747 * 330.00169 * 18 16 14 22 22 C 1.38878 * 119.86109 * 359.47415 * 12 11 10 23 23 C 1.38104 * 119.93072 * 0.53047 * 22 12 11 24 24 C 1.54950 * 100.94051 * 34.13387 * 5 4 2 25 25 O 1.43237 * 109.83081 * 239.02013 * 2 1 3 26 26 H 1.09000 * 109.46899 * 299.11694 * 1 2 3 27 27 H 1.09006 * 109.47005 * 59.11264 * 1 2 3 28 28 H 1.08998 * 109.47142 * 179.10979 * 1 2 3 29 29 H 1.08995 * 109.47767 * 180.88378 * 3 2 1 30 30 H 1.09001 * 109.46844 * 300.88956 * 3 2 1 31 31 H 1.09001 * 109.47079 * 60.88262 * 3 2 1 32 32 H 1.09001 * 110.84909 * 339.96565 * 4 2 1 33 33 H 1.09004 * 110.84530 * 216.34598 * 4 2 1 34 34 H 1.00903 * 110.99629 * 31.04815 * 7 5 4 35 35 H 1.08993 * 109.47415 * 59.99903 * 8 7 5 36 36 H 1.09004 * 109.46775 * 299.99997 * 8 7 5 37 37 H 1.08003 * 119.96310 * 359.97438 * 10 9 8 38 38 H 1.08000 * 120.04048 * 180.02562 * 11 10 9 39 39 H 0.96992 * 120.00121 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.03575 * 180.25499 * 22 12 11 41 41 H 1.07996 * 119.96476 * 179.70501 * 23 22 12 42 42 H 1.08994 * 110.30971 * 82.47117 * 24 5 4 43 43 H 1.09000 * 110.30714 * 204.64013 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 2.0537 -0.7455 1.2463 5 6 2.3681 -2.1564 0.6785 6 1 1.4732 -2.7782 0.6535 7 7 3.4403 -2.8079 1.4427 8 6 3.3493 -4.2702 1.3358 9 6 4.4623 -4.9022 2.1312 10 6 4.2654 -5.2184 3.4631 11 6 5.2835 -5.7972 4.1948 12 6 6.5082 -6.0565 3.5933 13 8 7.5128 -6.6203 4.3113 14 6 7.2972 -6.7986 5.6303 15 1 6.3299 -6.5734 6.0545 16 6 8.3172 -7.2711 6.4419 17 7 8.1066 -7.4456 7.7288 18 14 9.9905 -7.6600 5.7082 19 1 10.8473 -6.4482 5.7597 20 1 10.6302 -8.7519 6.4853 21 1 9.8242 -8.0890 4.2963 22 6 6.7011 -5.7427 2.2543 23 6 5.6790 -5.1640 1.5279 24 6 2.8408 -1.7987 -0.7531 25 8 2.0159 -0.6936 -1.1552 26 1 -0.3633 0.5001 0.8978 27 1 -0.3633 0.5276 -0.8820 28 1 -0.3633 -1.0275 -0.0160 29 1 3.1387 1.4327 -0.0158 30 1 1.6758 1.9600 -0.8819 31 1 1.7017 1.9507 0.8978 32 1 1.2851 -0.8000 2.0172 33 1 2.9571 -0.2718 1.6305 34 1 3.4260 -2.5143 2.4080 35 1 3.4372 -4.5642 0.2900 36 1 2.3884 -4.6040 1.7275 37 1 3.3145 -5.0117 3.9317 38 1 5.1290 -6.0443 5.2347 39 1 8.8203 -7.7758 8.2966 40 1 7.6510 -5.9470 1.7826 41 1 5.8300 -4.9153 0.4879 42 1 3.8899 -1.5035 -0.7424 43 1 2.6919 -2.6454 -1.4232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396676004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:28 Heat of formation + Delta-G solvation = -53.072388 kcal Electronic energy + Delta-G solvation = -22477.395829 eV Core-core repulsion = 19101.938477 eV Total energy + Delta-G solvation = -3375.457352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17538 -39.22701 -37.20637 -35.38669 -33.41980 -32.45377 -31.18308 -30.26862 -28.49147 -27.64583 -26.02351 -25.58932 -23.93731 -22.09131 -21.27020 -20.46051 -20.13301 -17.92049 -17.34107 -16.69051 -16.22866 -15.46983 -15.15597 -14.84061 -14.60030 -14.26605 -13.98997 -13.83414 -13.68501 -13.67854 -13.53175 -12.91433 -12.69517 -12.65363 -12.48395 -12.23814 -12.11940 -11.98832 -11.84270 -11.35869 -11.34015 -11.15848 -10.87938 -10.77156 -10.68152 -10.60728 -10.17510 -9.73745 -9.41677 -8.89945 -8.54546 -8.28072 -7.35948 -6.44502 -4.11264 2.10336 2.14137 3.20370 3.24251 3.38740 3.50901 4.02693 4.20278 4.21544 4.52097 4.54871 4.61608 4.83622 4.84662 4.93854 5.02363 5.08153 5.21876 5.29058 5.31473 5.40859 5.42912 5.50547 5.56789 5.60763 5.61524 5.69219 5.72021 5.76937 5.83038 5.90148 5.99807 6.09947 6.31134 6.54604 6.75542 6.81450 6.95643 7.04506 7.20181 7.24241 7.33593 7.58628 7.76898 8.00964 8.90770 9.53069 10.63090 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035499 B = 0.002560 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.561825 B =10934.156624 C =11089.916711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 C -0.154 4.154 4 C -0.151 4.151 5 C 0.051 3.949 6 H 0.061 0.939 7 N -0.672 5.672 8 C 0.116 3.884 9 C -0.179 4.179 10 C -0.067 4.067 11 C -0.222 4.222 12 C 0.162 3.838 13 O -0.217 6.217 14 C -0.390 4.390 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.879 5.879 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.194 4.194 23 C -0.053 4.053 24 C 0.061 3.939 25 O -0.376 6.376 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.347 0.653 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.280 0.720 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.060 12.660 -13.701 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.064 3.936 3 C -0.211 4.211 4 C -0.189 4.189 5 C -0.059 4.059 6 H 0.079 0.921 7 N -0.305 5.305 8 C -0.012 4.012 9 C -0.180 4.180 10 C -0.085 4.085 11 C -0.241 4.241 12 C 0.110 3.890 13 O -0.122 6.122 14 C -0.466 4.466 15 H 0.124 0.876 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.213 4.213 23 C -0.072 4.072 24 C -0.016 4.016 25 O -0.296 6.296 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.167 0.833 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.090 0.910 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.090 0.910 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.333 12.619 -14.257 22.685 hybrid contribution -0.057 -0.483 0.852 0.980 sum -12.390 12.137 -13.405 21.920 Atomic orbital electron populations 1.22089 0.94157 1.02475 1.02289 1.21969 0.93958 0.92584 0.85128 1.22098 1.01813 0.95002 1.02216 1.23394 1.02453 0.95203 0.97810 1.23212 0.93268 0.94535 0.94927 0.92076 1.60512 1.45708 1.07021 1.17242 1.20718 0.95155 0.85894 0.99417 1.19152 0.95981 1.08214 0.94649 1.20637 0.97647 0.97088 0.93163 1.21232 0.93741 1.07477 1.01653 1.19150 0.87894 0.90821 0.91156 1.83575 1.37289 1.69080 1.22216 1.20765 1.01361 1.45355 0.79072 0.87643 1.24474 0.99273 0.95845 0.94410 1.69644 1.34530 1.43942 1.03603 0.86176 0.82170 0.78458 0.80080 1.19846 1.20767 1.18343 1.20228 1.00363 1.08141 0.92606 1.20468 0.91875 0.96372 0.98465 1.23373 0.95237 0.88716 0.94297 1.88431 1.67512 1.43795 1.29825 0.91577 0.91924 0.92231 0.91964 0.91999 0.91593 0.90113 0.89342 0.83342 0.90973 0.95114 0.87667 0.85014 0.91020 0.86533 0.86845 0.90995 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.73 37.16 0.32 -0.84 16 2 C 0.10 0.92 1.27 -89.90 -0.11 0.81 16 3 C -0.15 -1.22 8.75 37.16 0.32 -0.89 16 4 C -0.15 -1.29 5.50 -24.78 -0.14 -1.43 16 5 C 0.05 0.50 3.44 -65.46 -0.23 0.27 16 6 H 0.06 0.59 7.83 -51.93 -0.41 0.19 16 7 N -0.67 -7.63 6.41 -105.62 -0.68 -8.30 16 8 C 0.12 1.43 5.67 -4.98 -0.03 1.40 16 9 C -0.18 -2.81 5.40 -104.58 -0.56 -3.38 16 10 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 11 C -0.22 -4.67 9.17 -39.40 -0.36 -5.03 16 12 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 13 O -0.22 -5.68 8.59 0.05 0.00 -5.68 16 14 C -0.39 -10.91 9.95 30.88 0.31 -10.60 16 15 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 16 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 17 N -0.88 -25.25 13.96 55.48 0.77 -24.47 16 18 Si 0.91 21.56 28.62 -169.99 -4.86 16.70 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 22 C -0.19 -3.79 9.99 -39.39 -0.39 -4.19 16 23 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 24 C 0.06 0.64 7.48 38.19 0.29 0.92 16 25 O -0.38 -4.25 10.68 -35.23 -0.38 -4.62 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.60 7.82 -51.93 -0.41 0.19 16 33 H 0.09 0.79 7.85 -51.93 -0.41 0.38 16 34 H 0.35 3.93 8.44 -39.29 -0.33 3.60 16 35 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.03 0.36 8.03 -51.93 -0.42 -0.06 16 37 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.13 2.93 5.64 -52.49 -0.30 2.63 16 39 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.12 2.14 8.06 -52.48 -0.42 1.71 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -29.10 353.18 -8.28 -37.38 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.76 Total: 4.31 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.70 Total: -20.63 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.10 Total: -32.78 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.38 Total: -10.30 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.86 Total: 16.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.10 -8.28 -37.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396676004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.691 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds