Wall clock time and date at job start Tue Mar 31 2020 07:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.82640 * 2 1 4 4 C 1.54382 * 109.82990 * 120.88672 * 2 1 3 5 5 C 1.55305 * 102.25341 * 98.15706 * 4 2 1 6 6 H 1.08998 * 111.12398 * 276.17560 * 5 4 2 7 7 N 1.46898 * 111.12609 * 152.05102 * 5 4 2 8 8 C 1.46903 * 110.99853 * 155.00004 * 7 5 4 9 9 C 1.50696 * 109.47151 * 180.02562 * 8 7 5 10 10 C 1.38302 * 119.93469 * 89.99796 * 9 8 7 11 11 C 1.38094 * 120.07461 * 180.02562 * 10 9 8 12 12 C 1.38878 * 119.92859 * 0.27306 * 11 10 9 13 13 O 1.35748 * 120.07147 * 179.72501 * 12 11 10 14 14 C 1.34830 * 117.00101 * 354.46447 * 13 12 11 15 15 H 1.07999 * 119.99626 * 5.05831 * 14 13 12 16 16 C 1.38650 * 120.00326 * 185.05731 * 14 13 12 17 17 N 1.31562 * 120.00209 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00130 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47103 * 89.99872 * 18 16 14 20 20 H 1.48501 * 109.47279 * 210.00176 * 18 16 14 21 21 H 1.48498 * 109.46747 * 330.00169 * 18 16 14 22 22 C 1.38878 * 119.86109 * 359.47415 * 12 11 10 23 23 C 1.38104 * 119.93072 * 0.53047 * 22 12 11 24 24 C 1.54950 * 100.94051 * 34.13387 * 5 4 2 25 25 O 1.43237 * 109.83081 * 239.02013 * 2 1 3 26 26 H 1.09000 * 109.46899 * 299.11694 * 1 2 3 27 27 H 1.09006 * 109.47005 * 59.11264 * 1 2 3 28 28 H 1.08998 * 109.47142 * 179.10979 * 1 2 3 29 29 H 1.08995 * 109.47767 * 180.88378 * 3 2 1 30 30 H 1.09001 * 109.46844 * 300.88956 * 3 2 1 31 31 H 1.09001 * 109.47079 * 60.88262 * 3 2 1 32 32 H 1.09001 * 110.84909 * 339.96565 * 4 2 1 33 33 H 1.09004 * 110.84530 * 216.34598 * 4 2 1 34 34 H 1.00903 * 110.99629 * 31.04815 * 7 5 4 35 35 H 1.08993 * 109.47415 * 59.99903 * 8 7 5 36 36 H 1.09004 * 109.46775 * 299.99997 * 8 7 5 37 37 H 1.08003 * 119.96310 * 359.97438 * 10 9 8 38 38 H 1.08000 * 120.04048 * 180.02562 * 11 10 9 39 39 H 0.96992 * 120.00121 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.03575 * 180.25499 * 22 12 11 41 41 H 1.07996 * 119.96476 * 179.70501 * 23 22 12 42 42 H 1.08994 * 110.30971 * 82.47117 * 24 5 4 43 43 H 1.09000 * 110.30714 * 204.64013 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 2.0537 -0.7455 1.2463 5 6 2.3681 -2.1564 0.6785 6 1 1.4732 -2.7782 0.6535 7 7 3.4403 -2.8079 1.4427 8 6 3.3493 -4.2702 1.3358 9 6 4.4623 -4.9022 2.1312 10 6 4.2654 -5.2184 3.4631 11 6 5.2835 -5.7972 4.1948 12 6 6.5082 -6.0565 3.5933 13 8 7.5128 -6.6203 4.3113 14 6 7.2972 -6.7986 5.6303 15 1 6.3299 -6.5734 6.0545 16 6 8.3172 -7.2711 6.4419 17 7 8.1066 -7.4456 7.7288 18 14 9.9905 -7.6600 5.7082 19 1 10.8473 -6.4482 5.7597 20 1 10.6302 -8.7519 6.4853 21 1 9.8242 -8.0890 4.2963 22 6 6.7011 -5.7427 2.2543 23 6 5.6790 -5.1640 1.5279 24 6 2.8408 -1.7987 -0.7531 25 8 2.0159 -0.6936 -1.1552 26 1 -0.3633 0.5001 0.8978 27 1 -0.3633 0.5276 -0.8820 28 1 -0.3633 -1.0275 -0.0160 29 1 3.1387 1.4327 -0.0158 30 1 1.6758 1.9600 -0.8819 31 1 1.7017 1.9507 0.8978 32 1 1.2851 -0.8000 2.0172 33 1 2.9571 -0.2718 1.6305 34 1 3.4260 -2.5143 2.4080 35 1 3.4372 -4.5642 0.2900 36 1 2.3884 -4.6040 1.7275 37 1 3.3145 -5.0117 3.9317 38 1 5.1290 -6.0443 5.2347 39 1 8.8203 -7.7758 8.2966 40 1 7.6510 -5.9470 1.7826 41 1 5.8300 -4.9153 0.4879 42 1 3.8899 -1.5035 -0.7424 43 1 2.6919 -2.6454 -1.4232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396676004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:27 Heat of formation + Delta-G solvation = -71.379657 kcal Electronic energy + Delta-G solvation = -22478.189692 eV Core-core repulsion = 19101.938477 eV Total energy + Delta-G solvation = -3376.251215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01915 -40.77338 -38.72108 -36.46956 -34.46250 -34.11174 -32.35116 -31.78635 -29.68159 -28.23483 -27.40290 -26.74099 -25.24776 -23.66217 -22.04653 -21.90693 -20.86359 -19.81791 -19.10976 -17.46213 -17.17951 -16.68107 -16.33561 -16.11663 -15.83502 -15.64019 -15.49382 -15.18259 -14.97400 -14.47570 -14.38243 -14.31877 -14.16198 -14.04457 -13.54516 -13.30079 -13.09914 -13.01577 -12.78836 -12.53456 -12.48218 -12.40221 -12.17828 -12.00048 -11.87722 -11.82567 -11.43485 -11.27090 -10.90278 -10.49109 -9.79411 -9.43540 -8.98767 -8.50505 -6.22938 0.58469 0.62350 1.31278 1.35189 1.51697 2.27757 2.67055 2.83070 3.03273 3.15805 3.33357 3.53065 3.84808 3.93718 4.02956 4.04945 4.17866 4.20346 4.24197 4.32078 4.47519 4.59942 4.68276 4.74478 4.77311 4.78029 4.80503 4.83961 4.95529 4.97591 4.99907 5.01496 5.05869 5.27137 5.28218 5.37309 5.39232 5.58619 5.76432 5.81308 5.91255 6.01316 6.19799 6.26593 6.39661 6.84110 7.59140 8.61120 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035499 B = 0.002560 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.561825 B =10934.156624 C =11089.916711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.095 3.905 3 C -0.153 4.153 4 C -0.146 4.146 5 C 0.057 3.943 6 H 0.069 0.931 7 N -0.678 5.678 8 C 0.120 3.880 9 C -0.150 4.150 10 C -0.065 4.065 11 C -0.238 4.238 12 C 0.120 3.880 13 O -0.246 6.246 14 C -0.399 4.399 15 H 0.081 0.919 16 C 0.009 3.991 17 N -0.924 5.924 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.263 1.263 22 C -0.195 4.195 23 C -0.049 4.049 24 C 0.060 3.940 25 O -0.396 6.396 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.349 0.651 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.285 0.715 40 H 0.126 0.874 41 H 0.150 0.850 42 H 0.061 0.939 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.377 13.912 -16.051 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.056 3.944 3 C -0.211 4.211 4 C -0.184 4.184 5 C -0.054 4.054 6 H 0.087 0.913 7 N -0.311 5.311 8 C -0.008 4.008 9 C -0.151 4.151 10 C -0.083 4.083 11 C -0.257 4.257 12 C 0.071 3.929 13 O -0.154 6.154 14 C -0.475 4.475 15 H 0.099 0.901 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.188 1.188 22 C -0.214 4.214 23 C -0.067 4.067 24 C -0.017 4.017 25 O -0.315 6.315 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.167 0.833 42 H 0.079 0.921 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.685 13.896 -16.640 25.637 hybrid contribution 0.065 -0.679 1.335 1.500 sum -13.621 13.216 -15.304 24.380 Atomic orbital electron populations 1.22083 0.93078 1.02567 1.03053 1.22177 0.94830 0.92791 0.84601 1.22103 1.01224 0.94734 1.02997 1.23378 1.02754 0.94282 0.97957 1.23165 0.92843 0.95073 0.94270 0.91271 1.60418 1.46804 1.06279 1.17551 1.20724 0.94106 0.86367 0.99621 1.19631 0.96560 1.04970 0.93953 1.20928 0.97708 0.95897 0.93798 1.21251 0.94668 1.08719 1.01060 1.19703 0.88100 0.92669 0.92437 1.83517 1.38818 1.71910 1.21147 1.20706 1.00738 1.45627 0.80422 0.90105 1.25277 1.02864 0.95962 0.94780 1.69726 1.35900 1.46046 1.04781 0.85222 0.77800 0.78755 0.78972 1.19102 1.19192 1.18752 1.20532 1.01825 1.07666 0.91338 1.20912 0.91153 0.94728 0.99895 1.23373 0.94643 0.88801 0.94922 1.88418 1.67696 1.44217 1.31209 0.89912 0.92160 0.92416 0.92865 0.92128 0.89979 0.88586 0.89766 0.83202 0.89432 0.93532 0.84783 0.87530 0.90580 0.85602 0.83282 0.92081 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.73 71.98 0.63 -1.25 16 2 C 0.10 1.47 1.27 -10.32 -0.01 1.46 16 3 C -0.15 -2.13 8.75 71.98 0.63 -1.50 16 4 C -0.15 -2.06 5.50 31.86 0.18 -1.89 16 5 C 0.06 0.91 3.44 46.37 0.16 1.07 16 6 H 0.07 1.05 7.83 -2.39 -0.02 1.03 16 7 N -0.68 -12.80 6.41 -488.08 -3.13 -15.93 16 8 C 0.12 2.40 5.67 85.56 0.49 2.89 16 9 C -0.15 -4.20 5.40 -19.84 -0.11 -4.31 16 10 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 11 C -0.24 -10.24 9.17 22.39 0.21 -10.03 16 12 C 0.12 5.58 6.65 22.58 0.15 5.73 16 13 O -0.25 -13.43 8.59 -22.72 -0.20 -13.62 16 14 C -0.40 -23.54 9.95 67.92 0.68 -22.86 16 15 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 16 C 0.01 0.55 5.49 84.83 0.47 1.01 16 17 N -0.92 -55.26 13.96 21.61 0.30 -54.96 16 18 Si 0.97 45.59 28.62 68.60 1.96 47.56 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 22 C -0.19 -7.37 9.99 22.39 0.22 -7.15 16 23 C -0.05 -1.45 9.69 22.25 0.22 -1.24 16 24 C 0.06 1.10 7.48 72.65 0.54 1.64 16 25 O -0.40 -8.12 10.68 -148.98 -1.59 -9.71 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 1.07 7.82 -2.39 -0.02 1.05 16 33 H 0.08 1.28 7.85 -2.38 -0.02 1.26 16 34 H 0.35 6.63 8.44 -89.69 -0.76 5.87 16 35 H 0.09 1.58 8.08 -2.39 -0.02 1.56 16 36 H 0.05 0.84 8.03 -2.38 -0.02 0.82 16 37 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 38 H 0.11 5.08 5.64 -2.91 -0.02 5.07 16 39 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -65.98 353.18 2.24 -63.74 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.24 Total: 21.23 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 4.65 Total: -38.31 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -2.83 Total: -70.89 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -1.79 Total: -23.33 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.96 Total: 47.56 kcal Total: -65.98 2.24 -63.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396676004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.643 kcal (2) G-P(sol) polarization free energy of solvation -65.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds