Wall clock time and date at job start Tue Mar 31 2020 07:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34211 * 125.43693 * 2 1 4 4 C 1.33655 * 110.90604 * 179.85134 * 3 2 1 5 5 C 1.50704 * 125.79910 * 180.13437 * 4 3 2 6 6 C 1.36413 * 108.39748 * 0.41321 * 4 3 2 7 7 C 1.47382 * 127.19046 * 179.73653 * 6 4 3 8 8 O 1.21617 * 119.99993 * 270.01999 * 7 6 4 9 9 N 1.34774 * 119.99964 * 90.02894 * 7 6 4 10 10 C 1.46928 * 120.63130 * 359.71420 * 9 7 6 11 11 C 1.52761 * 109.00620 * 233.58489 * 10 9 7 12 12 C 1.53039 * 109.38630 * 305.59046 * 11 10 9 13 13 C 1.50703 * 109.44672 * 181.25428 * 12 11 10 14 14 H 1.07994 * 119.99839 * 239.93393 * 13 12 11 15 15 C 1.37871 * 120.00075 * 59.94183 * 13 12 11 16 16 N 1.31516 * 120.00038 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00241 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47242 * 89.99218 * 17 15 13 19 19 H 1.48491 * 109.47466 * 209.99751 * 17 15 13 20 20 H 1.48503 * 109.46633 * 329.99787 * 17 15 13 21 21 C 1.53034 * 109.53888 * 61.24032 * 12 11 10 22 22 C 1.46931 * 120.62731 * 179.97438 * 9 7 6 23 23 C 1.34180 * 125.43747 * 180.31324 * 2 1 3 24 24 C 1.50699 * 127.02116 * 359.97100 * 23 2 1 25 25 H 1.09002 * 109.47152 * 269.68892 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68992 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68973 * 1 2 3 28 28 H 1.09000 * 109.47047 * 270.32335 * 5 4 3 29 29 H 1.08998 * 109.47517 * 30.32954 * 5 4 3 30 30 H 1.09004 * 109.47117 * 150.32890 * 5 4 3 31 31 H 1.08992 * 109.58697 * 353.41929 * 10 9 7 32 32 H 1.09003 * 109.58263 * 113.84873 * 10 9 7 33 33 H 1.09004 * 109.56423 * 185.55381 * 11 10 9 34 34 H 1.09007 * 109.35801 * 65.50461 * 11 10 9 35 35 H 1.09001 * 109.46151 * 301.22089 * 12 11 10 36 36 H 0.97002 * 119.99863 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.50081 * 178.68114 * 21 12 11 38 38 H 1.08999 * 109.52634 * 58.60143 * 21 12 11 39 39 H 1.09004 * 109.58582 * 246.15114 * 22 9 7 40 40 H 1.08996 * 109.58872 * 6.43847 * 22 9 7 41 41 H 1.09001 * 109.46628 * 90.02843 * 24 23 2 42 42 H 1.09000 * 109.47169 * 210.02306 * 24 23 2 43 43 H 1.08995 * 109.47391 * 330.03361 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7581 0.0032 5 6 4.7390 1.7202 0.0071 6 6 3.6710 -0.6029 -0.0039 7 6 4.9025 -1.4125 -0.0089 8 8 5.4101 -1.7408 -1.0641 9 7 5.4660 -1.7892 1.1560 10 6 4.8679 -1.3952 2.4389 11 6 5.9314 -0.7081 3.2935 12 6 7.1497 -1.6251 3.4229 13 6 8.1873 -0.9614 4.2911 14 1 9.1691 -0.7505 3.8938 15 6 7.8833 -0.6237 5.5928 16 7 6.6876 -0.8802 6.0766 17 14 9.1697 0.1983 6.6693 18 1 9.0673 1.6727 6.5249 19 1 8.9415 -0.1771 8.0878 20 1 10.5231 -0.2472 6.2510 21 6 7.7397 -1.8910 2.0361 22 6 6.6934 -2.5969 1.1671 23 6 2.2850 -1.0932 -0.0060 24 6 1.8308 -2.5301 -0.0132 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 5.0177 1.9574 -1.0196 29 1 4.4511 2.6345 0.5260 30 1 5.5873 1.2644 0.5178 31 1 4.0426 -0.7059 2.2609 32 1 4.5016 -2.2807 2.9585 33 1 5.5257 -0.5002 4.2837 34 1 6.2285 0.2268 2.8180 35 1 6.8471 -2.5693 3.8758 36 1 6.4736 -0.6423 6.9923 37 1 8.6212 -2.5252 2.1312 38 1 8.0202 -0.9455 1.5721 39 1 6.4787 -3.5821 1.5811 40 1 7.0707 -2.7022 0.1500 41 1 1.7214 -2.8713 -1.0427 42 1 2.5699 -3.1474 0.4975 43 1 0.8727 -2.6109 0.5000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397359930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:19 Heat of formation + Delta-G solvation = -42.249095 kcal Electronic energy + Delta-G solvation = -24213.323640 eV Core-core repulsion = 20838.335621 eV Total energy + Delta-G solvation = -3374.988019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.51047 -39.41272 -36.73577 -34.24373 -33.52972 -32.95917 -31.12430 -30.08515 -29.75013 -28.10201 -26.31894 -24.62249 -23.53494 -22.41059 -21.80122 -19.81659 -19.28261 -18.01555 -17.02406 -16.40144 -16.26908 -15.74478 -15.16001 -14.67623 -14.55235 -13.77601 -13.74417 -13.51958 -13.16403 -13.12937 -13.00138 -12.83942 -12.68377 -12.64783 -12.57639 -12.41151 -12.24203 -12.15692 -11.66143 -11.29258 -11.16701 -10.95437 -10.65902 -10.40252 -10.12201 -9.72519 -9.58717 -9.23712 -9.17043 -8.90843 -8.39833 -8.18155 -8.01151 -6.04592 -4.10925 1.70981 2.30377 2.82019 2.88450 3.26911 3.34279 3.37506 3.56620 4.39447 4.50609 4.80626 4.89324 5.10780 5.13299 5.25086 5.30984 5.35769 5.50592 5.52472 5.63607 5.64539 5.73033 5.80849 5.82204 5.86197 5.94634 6.00331 6.12034 6.13622 6.26272 6.33754 6.45389 6.51618 6.64853 6.87926 7.02982 7.13136 7.19478 7.27350 7.64885 7.89908 7.91480 8.02727 8.38376 8.55777 8.92608 9.54383 11.00893 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.004510 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.064684 B = 6207.022215 C = 6614.732461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.020 4.020 3 O -0.173 6.173 4 C 0.039 3.961 5 C -0.078 4.078 6 C -0.211 4.211 7 C 0.587 3.413 8 O -0.553 6.553 9 N -0.590 5.590 10 C 0.107 3.893 11 C -0.123 4.123 12 C 0.048 3.952 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.123 4.123 22 C 0.111 3.889 23 C -0.147 4.147 24 C -0.082 4.082 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.037 0.963 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 1.315 -9.700 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 O -0.071 6.071 4 C -0.013 4.013 5 C -0.135 4.135 6 C -0.215 4.215 7 C 0.375 3.625 8 O -0.432 6.432 9 N -0.321 5.321 10 C -0.015 4.015 11 C -0.161 4.161 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.161 4.161 22 C -0.011 4.011 23 C -0.149 4.149 24 C -0.139 4.139 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.447 1.421 -10.058 15.304 hybrid contribution 0.721 0.370 0.798 1.138 sum -10.727 1.792 -9.260 14.283 Atomic orbital electron populations 1.20272 0.84963 1.03808 1.03478 1.21903 0.93643 0.83366 1.07979 1.83627 1.16027 1.35095 1.72354 1.22444 0.83043 0.93434 1.02337 1.20437 0.91879 0.97292 1.03850 1.20967 0.94002 0.93190 1.13353 1.17348 0.82499 0.79068 0.83624 1.90735 1.64194 1.57141 1.31136 1.48218 1.26334 1.51530 1.06045 1.21911 0.97062 0.99459 0.83036 1.21945 0.96169 0.97895 1.00091 1.18642 0.92957 0.95586 0.89830 1.21199 0.98349 1.39131 0.96327 0.92687 1.24952 0.95348 0.95743 0.97853 1.69839 1.19714 1.47854 1.15651 0.86625 0.82076 0.79720 0.79774 1.20741 1.21252 1.19948 1.22014 0.96706 0.99385 0.97966 1.21752 0.84600 0.93604 1.01179 1.21014 0.90198 0.96322 1.07363 1.20167 1.01208 0.90359 1.02141 0.90091 0.89489 0.90639 0.89663 0.89902 0.88776 0.91506 0.92111 0.87731 0.94391 0.95434 0.92977 0.92037 0.92949 0.92061 0.90268 0.91311 0.91406 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.04 36.01 0.36 -0.22 16 2 C -0.02 -0.27 7.28 -35.74 -0.26 -0.53 16 3 O -0.17 -2.55 10.52 7.66 0.08 -2.47 16 4 C 0.04 0.60 7.25 -34.96 -0.25 0.35 16 5 C -0.08 -1.03 10.24 36.01 0.37 -0.66 16 6 C -0.21 -3.59 4.07 -103.28 -0.42 -4.01 16 7 C 0.59 11.26 7.14 -12.54 -0.09 11.17 16 8 O -0.55 -12.04 16.52 5.26 0.09 -11.95 16 9 N -0.59 -11.10 2.98 -174.28 -0.52 -11.62 16 10 C 0.11 2.03 6.31 -3.93 -0.02 2.00 16 11 C -0.12 -2.71 5.14 -26.83 -0.14 -2.85 16 12 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 13 C -0.51 -13.50 8.56 -34.44 -0.29 -13.79 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -24.31 11.30 55.43 0.63 -23.68 16 17 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.12 -2.50 5.30 -26.59 -0.14 -2.64 16 22 C 0.11 2.06 6.44 -3.69 -0.02 2.03 16 23 C -0.15 -2.16 6.37 -102.50 -0.65 -2.81 16 24 C -0.08 -0.99 9.96 36.01 0.36 -0.63 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.59 7.75 -51.93 -0.40 0.19 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 31 H 0.07 1.20 6.24 -51.93 -0.32 0.88 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 2.58 6.03 -51.93 -0.31 2.27 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -30.48 350.13 -7.80 -38.28 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.83 Total: 0.57 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -1.49 Total: -10.07 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.11 Total: -35.30 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.17 Total: -14.42 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.48 -7.80 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397359930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.969 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds