Wall clock time and date at job start Tue Mar 31 2020 07:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34211 * 125.43693 * 2 1 4 4 C 1.33655 * 110.90604 * 179.85134 * 3 2 1 5 5 C 1.50704 * 125.79910 * 180.13437 * 4 3 2 6 6 C 1.36413 * 108.39748 * 0.41321 * 4 3 2 7 7 C 1.47382 * 127.19046 * 179.73653 * 6 4 3 8 8 O 1.21617 * 119.99993 * 270.01999 * 7 6 4 9 9 N 1.34774 * 119.99964 * 90.02894 * 7 6 4 10 10 C 1.46928 * 120.63130 * 359.71420 * 9 7 6 11 11 C 1.52761 * 109.00620 * 233.58489 * 10 9 7 12 12 C 1.53039 * 109.38630 * 305.59046 * 11 10 9 13 13 C 1.50703 * 109.44672 * 181.25428 * 12 11 10 14 14 H 1.07994 * 119.99839 * 239.93393 * 13 12 11 15 15 C 1.37871 * 120.00075 * 59.94183 * 13 12 11 16 16 N 1.31516 * 120.00038 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00241 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47242 * 89.99218 * 17 15 13 19 19 H 1.48491 * 109.47466 * 209.99751 * 17 15 13 20 20 H 1.48503 * 109.46633 * 329.99787 * 17 15 13 21 21 C 1.53034 * 109.53888 * 61.24032 * 12 11 10 22 22 C 1.46931 * 120.62731 * 179.97438 * 9 7 6 23 23 C 1.34180 * 125.43747 * 180.31324 * 2 1 3 24 24 C 1.50699 * 127.02116 * 359.97100 * 23 2 1 25 25 H 1.09002 * 109.47152 * 269.68892 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68992 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68973 * 1 2 3 28 28 H 1.09000 * 109.47047 * 270.32335 * 5 4 3 29 29 H 1.08998 * 109.47517 * 30.32954 * 5 4 3 30 30 H 1.09004 * 109.47117 * 150.32890 * 5 4 3 31 31 H 1.08992 * 109.58697 * 353.41929 * 10 9 7 32 32 H 1.09003 * 109.58263 * 113.84873 * 10 9 7 33 33 H 1.09004 * 109.56423 * 185.55381 * 11 10 9 34 34 H 1.09007 * 109.35801 * 65.50461 * 11 10 9 35 35 H 1.09001 * 109.46151 * 301.22089 * 12 11 10 36 36 H 0.97002 * 119.99863 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.50081 * 178.68114 * 21 12 11 38 38 H 1.08999 * 109.52634 * 58.60143 * 21 12 11 39 39 H 1.09004 * 109.58582 * 246.15114 * 22 9 7 40 40 H 1.08996 * 109.58872 * 6.43847 * 22 9 7 41 41 H 1.09001 * 109.46628 * 90.02843 * 24 23 2 42 42 H 1.09000 * 109.47169 * 210.02306 * 24 23 2 43 43 H 1.08995 * 109.47391 * 330.03361 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7581 0.0032 5 6 4.7390 1.7202 0.0071 6 6 3.6710 -0.6029 -0.0039 7 6 4.9025 -1.4125 -0.0089 8 8 5.4101 -1.7408 -1.0641 9 7 5.4660 -1.7892 1.1560 10 6 4.8679 -1.3952 2.4389 11 6 5.9314 -0.7081 3.2935 12 6 7.1497 -1.6251 3.4229 13 6 8.1873 -0.9614 4.2911 14 1 9.1691 -0.7505 3.8938 15 6 7.8833 -0.6237 5.5928 16 7 6.6876 -0.8802 6.0766 17 14 9.1697 0.1983 6.6693 18 1 9.0673 1.6727 6.5249 19 1 8.9415 -0.1771 8.0878 20 1 10.5231 -0.2472 6.2510 21 6 7.7397 -1.8910 2.0361 22 6 6.6934 -2.5969 1.1671 23 6 2.2850 -1.0932 -0.0060 24 6 1.8308 -2.5301 -0.0132 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 5.0177 1.9574 -1.0196 29 1 4.4511 2.6345 0.5260 30 1 5.5873 1.2644 0.5178 31 1 4.0426 -0.7059 2.2609 32 1 4.5016 -2.2807 2.9585 33 1 5.5257 -0.5002 4.2837 34 1 6.2285 0.2268 2.8180 35 1 6.8471 -2.5693 3.8758 36 1 6.4736 -0.6423 6.9923 37 1 8.6212 -2.5252 2.1312 38 1 8.0202 -0.9455 1.5721 39 1 6.4787 -3.5821 1.5811 40 1 7.0707 -2.7022 0.1500 41 1 1.7214 -2.8713 -1.0427 42 1 2.5699 -3.1474 0.4975 43 1 0.8727 -2.6109 0.5000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397359930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:18 Heat of formation + Delta-G solvation = -58.223211 kcal Electronic energy + Delta-G solvation = -24214.016330 eV Core-core repulsion = 20838.335621 eV Total energy + Delta-G solvation = -3375.680708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.62433 -40.96635 -38.42382 -35.42887 -35.18539 -34.17094 -32.88181 -31.76441 -30.59507 -29.19883 -28.07909 -25.84567 -24.94410 -24.07524 -23.31732 -21.30749 -20.57885 -19.47015 -18.58602 -18.03625 -17.56955 -17.13802 -16.50880 -16.45328 -16.08314 -15.09991 -14.92224 -14.84610 -14.59288 -14.44928 -14.36689 -14.13182 -13.92798 -13.89356 -13.66609 -13.47528 -13.34910 -13.31137 -13.13064 -12.99438 -12.80462 -12.47389 -12.22165 -12.16700 -11.97504 -11.50243 -11.20035 -11.03143 -10.87058 -10.42952 -10.31772 -9.64577 -9.24149 -8.07718 -6.21009 0.58550 1.18560 1.39391 1.42088 1.44394 1.53033 1.76657 2.11061 2.44586 3.19243 3.43896 3.55680 3.89766 4.01980 4.08871 4.22945 4.32240 4.33134 4.37853 4.43607 4.50844 4.53634 4.64344 4.68109 4.71141 4.77096 4.83702 4.86401 4.87975 4.94430 4.97033 5.04843 5.16283 5.17260 5.24936 5.40007 5.49674 5.55767 5.64030 5.96871 6.09676 6.10376 6.36235 6.39661 6.88502 7.03751 7.47055 8.96013 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.004510 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.064684 B = 6207.022215 C = 6614.732461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.013 4.013 3 O -0.177 6.177 4 C 0.034 3.966 5 C -0.078 4.078 6 C -0.245 4.245 7 C 0.593 3.407 8 O -0.583 6.583 9 N -0.590 5.590 10 C 0.124 3.876 11 C -0.111 4.111 12 C 0.046 3.954 13 C -0.533 4.533 14 H 0.049 0.951 15 C 0.019 3.981 16 N -0.913 5.913 17 Si 0.948 3.052 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.112 4.112 22 C 0.115 3.885 23 C -0.169 4.169 24 C -0.079 4.079 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.004 0.996 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.919 1.838 -9.996 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.061 4.061 3 O -0.074 6.074 4 C -0.018 4.018 5 C -0.134 4.134 6 C -0.249 4.249 7 C 0.381 3.619 8 O -0.465 6.465 9 N -0.321 5.321 10 C 0.002 3.998 11 C -0.149 4.149 12 C 0.028 3.972 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.180 4.180 16 N -0.552 5.552 17 Si 0.775 3.225 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.150 4.150 22 C -0.007 4.007 23 C -0.171 4.171 24 C -0.136 4.136 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.855 1.944 -10.352 16.619 hybrid contribution 1.136 0.214 0.885 1.455 sum -11.720 2.158 -9.467 15.220 Atomic orbital electron populations 1.20532 0.81411 1.05535 1.04987 1.22774 0.95418 0.82357 1.05584 1.83655 1.15709 1.35840 1.72193 1.22746 0.83937 0.93342 1.01772 1.20492 0.90602 0.97530 1.04808 1.21022 0.94232 0.93906 1.15721 1.17628 0.82824 0.78491 0.82926 1.90704 1.65297 1.58431 1.32036 1.48221 1.26346 1.51471 1.06047 1.21667 0.96136 0.99458 0.82540 1.21702 0.96389 0.97559 0.99287 1.18605 0.93191 0.94411 0.91020 1.21523 0.98790 1.39603 0.97218 0.93242 1.25622 0.97068 0.96284 0.99005 1.69953 1.20980 1.48403 1.15889 0.85707 0.79887 0.78842 0.78113 1.20284 1.20938 1.19661 1.21859 0.97387 0.99410 0.96354 1.21708 0.84165 0.93888 1.00978 1.21347 0.89202 0.97997 1.08563 1.20213 1.02043 0.88587 1.02726 0.88510 0.87449 0.89239 0.88247 0.87840 0.90636 0.90344 0.91807 0.90195 0.95140 0.97798 0.92936 0.91330 0.93664 0.90823 0.89886 0.90704 0.93160 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.04 71.24 0.71 -0.19 16 2 C -0.01 -0.31 7.28 24.76 0.18 -0.13 16 3 O -0.18 -4.88 10.52 4.49 0.05 -4.83 16 4 C 0.03 1.02 7.25 25.26 0.18 1.20 16 5 C -0.08 -2.00 10.24 71.24 0.73 -1.28 16 6 C -0.24 -8.21 4.07 -18.99 -0.08 -8.29 16 7 C 0.59 22.73 7.14 86.65 0.62 23.35 16 8 O -0.58 -25.54 16.52 -4.09 -0.07 -25.61 16 9 N -0.59 -22.22 2.98 -823.56 -2.45 -24.67 16 10 C 0.12 4.70 6.31 86.22 0.54 5.24 16 11 C -0.11 -4.98 5.14 30.53 0.16 -4.82 16 12 C 0.05 2.22 2.07 -11.51 -0.02 2.20 16 13 C -0.53 -28.47 8.56 25.60 0.22 -28.25 16 14 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 15 C 0.02 1.02 5.30 84.65 0.45 1.47 16 16 N -0.91 -50.25 11.30 21.45 0.24 -50.01 16 17 Si 0.95 42.44 29.54 68.60 2.03 44.47 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 C -0.11 -4.59 5.30 30.68 0.16 -4.43 16 22 C 0.11 4.24 6.44 86.38 0.56 4.80 16 23 C -0.17 -4.71 6.37 -18.49 -0.12 -4.83 16 24 C -0.08 -1.77 9.96 71.24 0.71 -1.06 16 25 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.11 1.01 7.75 -2.39 -0.02 0.99 16 27 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.22 7.93 -2.38 -0.02 2.20 16 31 H 0.08 2.80 6.24 -2.39 -0.01 2.79 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 33 H 0.08 4.03 6.03 -2.38 -0.01 4.01 16 34 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 37 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 40 H 0.08 3.05 7.00 -2.39 -0.02 3.03 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.10 1.56 7.79 -2.39 -0.02 1.54 16 Total: -1.00 -65.69 350.13 5.79 -59.90 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.99 Total: 15.77 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 5.00 Total: -15.01 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -2.21 Total: -74.68 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.02 Total: -30.44 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -65.69 5.79 -59.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397359930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.674 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds