Wall clock time and date at job start Tue Mar 31 2020 07:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34214 * 125.43622 * 2 1 4 4 C 1.33650 * 110.90755 * 179.73898 * 3 2 1 5 5 C 1.50695 * 125.80030 * 179.97438 * 4 3 2 6 6 C 1.36415 * 108.39814 * 359.97438 * 4 3 2 7 7 C 1.47376 * 127.19220 * 179.97438 * 6 4 3 8 8 O 1.21617 * 119.99656 * 90.02529 * 7 6 4 9 9 N 1.34777 * 120.00224 * 270.02683 * 7 6 4 10 10 C 1.46925 * 120.62931 * 359.97438 * 9 7 6 11 11 C 1.53184 * 108.78011 * 233.58653 * 10 9 7 12 12 C 1.53044 * 109.31198 * 305.36973 * 11 10 9 13 13 C 1.53045 * 109.53941 * 61.36143 * 12 11 10 14 14 H 1.09004 * 109.49439 * 58.62154 * 13 12 11 15 15 C 1.50694 * 109.49532 * 178.68557 * 13 12 11 16 16 H 1.08005 * 120.00331 * 359.97438 * 15 13 12 17 17 C 1.37881 * 119.99950 * 180.02562 * 15 13 12 18 18 N 1.31518 * 120.00050 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00127 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47031 * 60.00082 * 19 17 15 21 21 H 1.48502 * 109.47131 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47239 * 299.99847 * 19 17 15 23 23 C 1.46926 * 120.62944 * 179.72268 * 9 7 6 24 24 C 1.34179 * 125.43909 * 179.69353 * 2 1 3 25 25 C 1.50707 * 127.02043 * 0.24453 * 24 2 1 26 26 H 1.08997 * 109.47604 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47127 * 120.02789 * 1 2 3 28 28 H 1.08998 * 109.46839 * 240.02231 * 1 2 3 29 29 H 1.09004 * 109.47405 * 0.02562 * 5 4 3 30 30 H 1.09000 * 109.47666 * 120.01981 * 5 4 3 31 31 H 1.09005 * 109.46872 * 240.02108 * 5 4 3 32 32 H 1.09004 * 109.58615 * 353.37926 * 10 9 7 33 33 H 1.09001 * 109.58089 * 113.65486 * 10 9 7 34 34 H 1.09003 * 109.49598 * 65.31209 * 11 10 9 35 35 H 1.08997 * 109.50353 * 185.41317 * 11 10 9 36 36 H 1.09002 * 109.45725 * 181.38385 * 12 11 10 37 37 H 1.09000 * 109.45614 * 301.35379 * 12 11 10 38 38 H 0.96994 * 120.00524 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.58334 * 246.19817 * 23 9 7 40 40 H 1.08995 * 109.58755 * 6.62512 * 23 9 7 41 41 H 1.08996 * 109.47213 * 90.02635 * 25 24 2 42 42 H 1.09001 * 109.46735 * 210.02429 * 25 24 2 43 43 H 1.09001 * 109.46992 * 330.01953 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0057 5 6 4.7389 1.7203 0.0069 6 6 3.6710 -0.6028 0.0102 7 6 4.9025 -1.4124 0.0166 8 8 5.4069 -1.7435 1.0725 9 7 5.4696 -1.7858 -1.1476 10 6 4.8715 -1.3939 -2.4312 11 6 4.6585 -2.6510 -3.2802 12 6 5.9837 -3.4057 -3.4086 13 6 6.4642 -3.8358 -2.0207 14 1 5.7083 -4.4670 -1.5534 15 6 7.7525 -4.6067 -2.1511 16 1 8.1855 -4.7739 -3.1263 17 6 8.3779 -5.0996 -1.0255 18 7 7.8504 -4.8966 0.1621 19 14 9.9745 -6.0558 -1.1871 20 1 11.0047 -5.1952 -1.8221 21 1 10.4403 -6.4728 0.1599 22 1 9.7480 -7.2590 -2.0275 23 6 6.7006 -2.5878 -1.1574 24 6 2.2851 -1.0932 0.0058 25 6 1.8309 -2.5302 0.0084 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5143 -0.8898 28 1 -0.3633 -0.5135 0.8902 29 1 4.3626 2.7433 0.0029 30 1 5.3436 1.5593 0.8994 31 1 5.3496 1.5542 -0.8806 32 1 3.9131 -0.9058 -2.2539 33 1 5.5401 -0.7080 -2.9514 34 1 3.9193 -3.2928 -2.8008 35 1 4.3050 -2.3654 -4.2710 36 1 5.8403 -4.2877 -4.0328 37 1 6.7294 -2.7549 -3.8653 38 1 8.2905 -5.2430 0.9540 39 1 7.5167 -1.9994 -1.5769 40 1 6.9493 -2.8878 -0.1394 41 1 1.7254 -2.8797 -1.0186 42 1 2.5680 -3.1432 0.5270 43 1 0.8708 -2.6069 0.5188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397836505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:38 Heat of formation + Delta-G solvation = -40.994638 kcal Electronic energy + Delta-G solvation = -24348.477612 eV Core-core repulsion = 20973.543990 eV Total energy + Delta-G solvation = -3374.933622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45849 -39.13414 -36.57277 -34.15634 -33.43875 -32.74886 -31.63363 -29.82070 -29.67398 -28.01499 -25.36984 -24.94739 -24.10925 -22.13897 -21.75824 -19.79006 -19.04606 -18.03572 -16.85460 -16.38384 -16.12342 -15.51293 -14.97933 -14.55485 -14.39750 -13.69637 -13.67326 -13.56891 -13.52457 -13.10480 -12.85039 -12.73153 -12.69326 -12.65984 -12.51386 -12.38688 -12.16168 -11.96277 -11.81433 -11.09333 -10.98120 -10.90234 -10.51502 -10.38197 -10.22024 -9.87052 -9.47956 -9.15816 -9.01612 -8.88673 -8.41649 -8.15059 -7.71069 -5.97955 -4.07068 1.73768 2.38379 2.85746 3.18122 3.32933 3.38907 3.40069 3.84924 4.44051 4.54716 4.89732 4.97007 5.11423 5.21864 5.31400 5.31717 5.37827 5.41846 5.47402 5.53028 5.55473 5.69676 5.76848 5.79524 5.87601 5.98166 6.03602 6.08835 6.22314 6.30671 6.33917 6.57456 6.64120 6.69857 6.87772 6.99033 7.17063 7.24082 7.31698 7.65464 7.88472 8.01434 8.28707 8.40217 8.90533 8.97960 9.58477 11.07323 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.004487 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.363512 B = 6238.872853 C = 6390.239614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.025 4.025 3 O -0.176 6.176 4 C 0.025 3.975 5 C -0.075 4.075 6 C -0.204 4.204 7 C 0.579 3.421 8 O -0.531 6.531 9 N -0.596 5.596 10 C 0.112 3.888 11 C -0.132 4.132 12 C -0.110 4.110 13 C 0.042 3.958 14 H 0.029 0.971 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.112 3.888 24 C -0.143 4.143 25 C -0.085 4.085 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.043 0.957 40 H 0.122 0.878 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 11.591 -3.424 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 O -0.074 6.074 4 C -0.026 4.026 5 C -0.131 4.131 6 C -0.209 4.209 7 C 0.365 3.635 8 O -0.409 6.409 9 N -0.328 5.328 10 C -0.011 4.011 11 C -0.170 4.170 12 C -0.148 4.148 13 C 0.023 3.977 14 H 0.047 0.953 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.008 4.008 24 C -0.145 4.145 25 C -0.141 4.141 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.140 0.860 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.980 11.643 -2.660 17.639 hybrid contribution 0.933 -0.673 -0.116 1.157 sum -12.047 10.970 -2.776 16.528 Atomic orbital electron populations 1.20245 0.85023 1.03626 1.03430 1.21889 0.93569 0.83393 1.08509 1.83615 1.16031 1.35111 1.72596 1.22380 0.83020 0.93464 1.03780 1.20378 0.91738 0.96648 1.04375 1.21238 0.94494 0.93192 1.11939 1.17339 0.82394 0.79519 0.84227 1.90811 1.63720 1.55611 1.30709 1.48456 1.27772 1.52269 1.04287 1.21574 0.97717 0.96792 0.85061 1.21925 0.99747 0.96954 0.98362 1.21632 0.94310 0.98448 1.00414 1.19019 0.96742 0.92406 0.89575 0.95299 1.21046 1.07542 1.34490 0.93013 0.92427 1.25053 0.97569 0.95920 0.95417 1.69882 1.39098 1.44994 0.97775 0.86660 0.83812 0.80393 0.77144 1.20254 1.21261 1.20292 1.22398 0.81279 0.90713 1.06393 1.21084 0.90310 0.96379 1.06701 1.20195 1.01238 0.90394 1.02322 0.90771 0.89836 0.89882 0.90325 0.89194 0.89398 0.91195 0.92295 0.92197 0.92347 0.93038 0.93208 0.92583 0.93905 0.85978 0.91143 0.90933 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 9.93 36.01 0.36 -0.21 16 2 C -0.03 -0.33 7.28 -35.74 -0.26 -0.59 16 3 O -0.18 -2.51 10.52 7.66 0.08 -2.43 16 4 C 0.02 0.37 7.37 -34.97 -0.26 0.12 16 5 C -0.08 -0.90 10.17 36.00 0.37 -0.53 16 6 C -0.20 -3.63 4.02 -103.28 -0.42 -4.05 16 7 C 0.58 12.53 7.30 -12.54 -0.09 12.43 16 8 O -0.53 -13.86 16.52 5.26 0.09 -13.77 16 9 N -0.60 -12.42 2.97 -173.82 -0.52 -12.94 16 10 C 0.11 1.88 6.33 -3.72 -0.02 1.86 16 11 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 12 C -0.11 -2.21 5.10 -26.69 -0.14 -2.35 16 13 C 0.04 1.04 2.26 -91.45 -0.21 0.83 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.52 -14.19 8.56 -34.44 -0.29 -14.48 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -25.84 11.41 55.43 0.63 -25.21 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.11 2.75 5.43 -3.51 -0.02 2.73 16 24 C -0.14 -2.22 6.33 -102.49 -0.65 -2.87 16 25 C -0.08 -1.18 10.15 36.01 0.37 -0.82 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.08 6.30 -51.93 -0.33 0.75 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.12 3.50 5.15 -51.93 -0.27 3.24 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -32.74 351.42 -7.85 -40.59 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.89 Total: 0.81 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.52 Total: -8.63 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.12 Total: -38.14 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.17 Total: -16.21 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.74 -7.85 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397836505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.406 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds