Wall clock time and date at job start Tue Mar 31 2020 07:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34214 * 125.43622 * 2 1 4 4 C 1.33650 * 110.90755 * 179.73898 * 3 2 1 5 5 C 1.50695 * 125.80030 * 179.97438 * 4 3 2 6 6 C 1.36415 * 108.39814 * 359.97438 * 4 3 2 7 7 C 1.47376 * 127.19220 * 179.97438 * 6 4 3 8 8 O 1.21617 * 119.99656 * 90.02529 * 7 6 4 9 9 N 1.34777 * 120.00224 * 270.02683 * 7 6 4 10 10 C 1.46925 * 120.62931 * 359.97438 * 9 7 6 11 11 C 1.53184 * 108.78011 * 233.58653 * 10 9 7 12 12 C 1.53044 * 109.31198 * 305.36973 * 11 10 9 13 13 C 1.53045 * 109.53941 * 61.36143 * 12 11 10 14 14 H 1.09004 * 109.49439 * 58.62154 * 13 12 11 15 15 C 1.50694 * 109.49532 * 178.68557 * 13 12 11 16 16 H 1.08005 * 120.00331 * 359.97438 * 15 13 12 17 17 C 1.37881 * 119.99950 * 180.02562 * 15 13 12 18 18 N 1.31518 * 120.00050 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00127 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47031 * 60.00082 * 19 17 15 21 21 H 1.48502 * 109.47131 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47239 * 299.99847 * 19 17 15 23 23 C 1.46926 * 120.62944 * 179.72268 * 9 7 6 24 24 C 1.34179 * 125.43909 * 179.69353 * 2 1 3 25 25 C 1.50707 * 127.02043 * 0.24453 * 24 2 1 26 26 H 1.08997 * 109.47604 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47127 * 120.02789 * 1 2 3 28 28 H 1.08998 * 109.46839 * 240.02231 * 1 2 3 29 29 H 1.09004 * 109.47405 * 0.02562 * 5 4 3 30 30 H 1.09000 * 109.47666 * 120.01981 * 5 4 3 31 31 H 1.09005 * 109.46872 * 240.02108 * 5 4 3 32 32 H 1.09004 * 109.58615 * 353.37926 * 10 9 7 33 33 H 1.09001 * 109.58089 * 113.65486 * 10 9 7 34 34 H 1.09003 * 109.49598 * 65.31209 * 11 10 9 35 35 H 1.08997 * 109.50353 * 185.41317 * 11 10 9 36 36 H 1.09002 * 109.45725 * 181.38385 * 12 11 10 37 37 H 1.09000 * 109.45614 * 301.35379 * 12 11 10 38 38 H 0.96994 * 120.00524 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.58334 * 246.19817 * 23 9 7 40 40 H 1.08995 * 109.58755 * 6.62512 * 23 9 7 41 41 H 1.08996 * 109.47213 * 90.02635 * 25 24 2 42 42 H 1.09001 * 109.46735 * 210.02429 * 25 24 2 43 43 H 1.09001 * 109.46992 * 330.01953 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0057 5 6 4.7389 1.7203 0.0069 6 6 3.6710 -0.6028 0.0102 7 6 4.9025 -1.4124 0.0166 8 8 5.4069 -1.7435 1.0725 9 7 5.4696 -1.7858 -1.1476 10 6 4.8715 -1.3939 -2.4312 11 6 4.6585 -2.6510 -3.2802 12 6 5.9837 -3.4057 -3.4086 13 6 6.4642 -3.8358 -2.0207 14 1 5.7083 -4.4670 -1.5534 15 6 7.7525 -4.6067 -2.1511 16 1 8.1855 -4.7739 -3.1263 17 6 8.3779 -5.0996 -1.0255 18 7 7.8504 -4.8966 0.1621 19 14 9.9745 -6.0558 -1.1871 20 1 11.0047 -5.1952 -1.8221 21 1 10.4403 -6.4728 0.1599 22 1 9.7480 -7.2590 -2.0275 23 6 6.7006 -2.5878 -1.1574 24 6 2.2851 -1.0932 0.0058 25 6 1.8309 -2.5302 0.0084 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5143 -0.8898 28 1 -0.3633 -0.5135 0.8902 29 1 4.3626 2.7433 0.0029 30 1 5.3436 1.5593 0.8994 31 1 5.3496 1.5542 -0.8806 32 1 3.9131 -0.9058 -2.2539 33 1 5.5401 -0.7080 -2.9514 34 1 3.9193 -3.2928 -2.8008 35 1 4.3050 -2.3654 -4.2710 36 1 5.8403 -4.2877 -4.0328 37 1 6.7294 -2.7549 -3.8653 38 1 8.2905 -5.2430 0.9540 39 1 7.5167 -1.9994 -1.5769 40 1 6.9493 -2.8878 -0.1394 41 1 1.7254 -2.8797 -1.0186 42 1 2.5680 -3.1432 0.5270 43 1 0.8708 -2.6069 0.5188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397836505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:37 Heat of formation + Delta-G solvation = -60.560992 kcal Electronic energy + Delta-G solvation = -24349.326072 eV Core-core repulsion = 20973.543990 eV Total energy + Delta-G solvation = -3375.782082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.60829 -40.82433 -38.33101 -35.45758 -35.10656 -34.07643 -33.29620 -31.56932 -30.58019 -29.19682 -27.20967 -26.59573 -25.22705 -23.65897 -23.38387 -21.31419 -20.40610 -19.54588 -18.49382 -17.97460 -17.51795 -17.04304 -16.51316 -16.37262 -15.94601 -15.24056 -15.02425 -14.80464 -14.52534 -14.45324 -14.40302 -14.17353 -13.89461 -13.79644 -13.66704 -13.48574 -13.46073 -13.32799 -13.00031 -12.85966 -12.74982 -12.31965 -12.27766 -12.20187 -11.88752 -11.66364 -11.26066 -10.98347 -10.84502 -10.54200 -10.32234 -9.47756 -9.24093 -8.11463 -6.29281 0.59923 1.19498 1.40675 1.42310 1.50788 1.53686 1.78540 2.25242 2.42454 3.16677 3.48973 3.61966 3.91470 4.01747 4.07114 4.13318 4.31333 4.34891 4.40385 4.51891 4.54857 4.65027 4.66747 4.71245 4.76862 4.79264 4.82291 4.87451 4.89211 4.96099 5.05431 5.07313 5.19726 5.22229 5.25184 5.33732 5.52917 5.54063 5.60971 5.86748 5.96648 6.10795 6.30873 6.58496 6.83506 7.23190 7.41358 8.92016 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.004487 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.363512 B = 6238.872853 C = 6390.239614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.005 4.005 3 O -0.171 6.171 4 C 0.036 3.964 5 C -0.077 4.077 6 C -0.242 4.242 7 C 0.579 3.421 8 O -0.593 6.593 9 N -0.596 5.596 10 C 0.110 3.890 11 C -0.123 4.123 12 C -0.104 4.104 13 C 0.041 3.959 14 H -0.016 1.016 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.010 3.990 18 N -0.917 5.917 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.124 3.876 24 C -0.173 4.173 25 C -0.079 4.079 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.259 0.741 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.033 13.431 -5.752 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.054 4.054 3 O -0.068 6.068 4 C -0.015 4.015 5 C -0.133 4.133 6 C -0.246 4.246 7 C 0.367 3.633 8 O -0.475 6.475 9 N -0.326 5.326 10 C -0.012 4.012 11 C -0.161 4.161 12 C -0.141 4.141 13 C 0.022 3.978 14 H 0.002 0.998 15 C -0.575 4.575 16 H 0.083 0.917 17 C -0.190 4.190 18 N -0.556 5.556 19 Si 0.784 3.216 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.192 1.192 23 C 0.002 3.998 24 C -0.174 4.174 25 C -0.136 4.136 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.845 13.500 -5.049 20.691 hybrid contribution 1.446 -1.223 0.611 1.990 sum -13.398 12.277 -4.438 18.707 Atomic orbital electron populations 1.20526 0.81228 1.05439 1.05132 1.22684 0.95312 0.82091 1.05311 1.83672 1.15587 1.35423 1.72131 1.22759 0.84084 0.92873 1.01811 1.20519 0.90753 0.97840 1.04178 1.21020 0.93745 0.94200 1.15650 1.17914 0.83080 0.78949 0.83328 1.90762 1.65719 1.58136 1.32886 1.48463 1.26714 1.51333 1.06105 1.21869 0.98945 0.97390 0.82963 1.21884 0.97440 0.96152 1.00646 1.21516 0.96396 0.99280 0.96952 1.18948 0.94892 0.91679 0.92326 0.99764 1.21496 1.08351 1.34462 0.93207 0.91736 1.25920 1.01050 0.96992 0.94991 1.70099 1.40720 1.46266 0.98488 0.85596 0.79740 0.79266 0.76993 1.19043 1.21586 1.19224 1.21865 0.83073 0.91282 1.03551 1.21264 0.89548 0.97630 1.09000 1.20166 1.01423 0.89234 1.02750 0.88938 0.87717 0.88383 0.87017 0.90250 0.88659 0.89227 0.89960 0.93316 0.87768 0.92691 0.92151 0.93159 0.93964 0.90652 0.90219 0.95169 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 9.93 71.24 0.71 -0.14 16 2 C -0.01 -0.13 7.28 24.76 0.18 0.05 16 3 O -0.17 -4.41 10.52 4.49 0.05 -4.36 16 4 C 0.04 1.05 7.37 25.26 0.19 1.24 16 5 C -0.08 -1.72 10.17 71.23 0.72 -1.00 16 6 C -0.24 -8.65 4.02 -18.99 -0.08 -8.72 16 7 C 0.58 26.33 7.30 86.65 0.63 26.96 16 8 O -0.59 -33.52 16.52 -4.08 -0.07 -33.59 16 9 N -0.60 -25.62 2.97 -822.08 -2.44 -28.06 16 10 C 0.11 3.50 6.33 86.36 0.55 4.05 16 11 C -0.12 -3.86 6.08 30.67 0.19 -3.67 16 12 C -0.10 -4.07 5.10 30.62 0.16 -3.92 16 13 C 0.04 2.10 2.26 -11.33 -0.03 2.08 16 14 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 15 C -0.54 -29.90 8.56 25.60 0.22 -29.68 16 16 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 17 C 0.01 0.56 5.30 84.65 0.45 1.01 16 18 N -0.92 -57.02 11.41 21.45 0.24 -56.77 16 19 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C 0.12 6.42 5.43 86.49 0.47 6.89 16 24 C -0.17 -5.20 6.33 -18.49 -0.12 -5.32 16 25 C -0.08 -2.20 10.15 71.24 0.72 -1.48 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.09 2.56 6.30 -2.38 -0.02 2.54 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.08 4.67 5.15 -2.39 -0.01 4.65 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 2.00 7.89 -2.39 -0.02 1.98 16 Total: -1.00 -78.07 351.42 5.76 -72.31 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.99 Total: 15.41 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.96 Total: -11.65 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.19 Total: -84.83 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.02 Total: -37.95 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -78.07 5.76 -72.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397836505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.745 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds