Wall clock time and date at job start Tue Mar 31 2020 07:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99850 * 2 1 4 4 C 1.38786 * 119.93623 * 359.97438 * 3 2 1 5 5 C 1.38305 * 120.01681 * 180.43360 * 4 3 2 6 6 C 1.37969 * 119.71894 * 0.02562 * 5 4 3 7 7 C 1.38255 * 120.63347 * 359.14768 * 6 5 4 8 8 C 1.38661 * 119.93325 * 180.02562 * 3 2 1 9 9 O 1.36039 * 120.10053 * 181.81091 * 7 6 5 10 10 C 1.43320 * 115.33253 * 68.99106 * 9 7 6 11 11 C 1.52999 * 109.23031 * 34.91639 * 10 9 7 12 12 C 1.53000 * 109.23342 * 154.28955 * 10 9 7 13 13 C 1.51364 * 110.69898 * 274.60507 * 10 9 7 14 14 N 1.46021 * 113.61346 * 65.01999 * 13 10 9 15 15 C 1.46897 * 110.99844 * 165.92136 * 14 13 10 16 16 C 1.50702 * 109.47152 * 189.99490 * 15 14 13 17 17 H 1.08002 * 119.99885 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00390 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99702 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46937 * 60.00959 * 20 18 16 22 22 H 1.48499 * 109.47066 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47413 * 300.00902 * 20 18 16 24 24 C 1.46693 * 112.61443 * 291.07434 * 14 13 10 25 25 H 1.08998 * 109.47276 * 60.00019 * 1 2 3 26 26 H 1.09005 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46853 * 299.99280 * 1 2 3 28 28 H 1.08000 * 119.99401 * 0.43102 * 4 3 2 29 29 H 1.08000 * 120.14348 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.16938 * 359.92365 * 8 3 2 31 31 H 1.08996 * 109.47119 * 60.00169 * 11 10 9 32 32 H 1.09000 * 109.47317 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47344 * 299.99950 * 11 10 9 34 34 H 1.09002 * 109.47018 * 60.00282 * 12 10 9 35 35 H 1.09001 * 109.46854 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.47041 * 300.00202 * 12 10 9 37 37 H 1.08992 * 108.65743 * 186.08563 * 13 10 9 38 38 H 1.09000 * 108.65381 * 304.08863 * 13 10 9 39 39 H 1.09000 * 109.47398 * 310.00363 * 15 14 13 40 40 H 1.09003 * 109.46948 * 70.00083 * 15 14 13 41 41 H 0.97001 * 120.00248 * 179.97438 * 19 18 16 42 42 H 1.08991 * 109.58556 * 324.69081 * 24 14 13 43 43 H 1.09002 * 109.57799 * 204.27943 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2887 2.3740 -0.0005 5 6 1.9148 3.6072 -0.0096 6 6 3.2928 3.6746 -0.0186 7 6 4.0547 2.5210 -0.0010 8 6 3.4307 1.2819 -0.0005 9 8 5.4125 2.6005 0.0271 10 6 5.9723 3.1018 1.2474 11 6 5.1190 2.6276 2.4255 12 6 7.3953 2.5630 1.4079 13 6 6.0104 4.6149 1.2367 14 7 4.6877 5.2331 1.2116 15 6 4.7690 6.6636 1.5357 16 6 3.3804 7.2117 1.7415 17 1 2.5232 6.5623 1.6418 18 6 3.2043 8.5421 2.0579 19 7 4.2480 9.3328 2.1798 20 14 1.4830 9.2214 2.3136 21 1 0.8259 8.4969 3.4310 22 1 1.5652 10.6674 2.6412 23 1 0.6897 9.0399 1.0716 24 6 3.9902 5.0214 -0.0614 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.2103 2.3161 0.0061 29 1 1.3276 4.5136 -0.0096 30 1 4.0206 0.3772 0.0003 31 1 5.1065 1.5379 2.4497 32 1 5.5417 3.0064 3.3561 33 1 4.1012 3.0001 2.3102 34 1 8.0046 2.8895 0.5651 35 1 7.8247 2.9417 2.3354 36 1 7.3701 1.4737 1.4377 37 1 6.5381 4.9568 2.1270 38 1 6.5635 4.9435 0.3568 39 1 5.3512 6.7970 2.4475 40 1 5.2516 7.1951 0.7155 41 1 4.1241 10.2688 2.4021 42 1 4.7105 5.0340 -0.8793 43 1 3.2525 5.8101 -0.2094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421042111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:58 Heat of formation + Delta-G solvation = -40.924108 kcal Electronic energy + Delta-G solvation = -24390.201676 eV Core-core repulsion = 21015.271113 eV Total energy + Delta-G solvation = -3374.930563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65892 -39.27019 -36.64474 -36.14853 -33.26465 -32.43029 -30.84909 -29.52977 -27.61264 -27.36758 -26.95415 -25.53429 -23.95408 -22.48742 -21.59944 -20.12716 -19.82542 -17.84665 -16.57279 -16.44719 -15.93969 -15.72065 -15.42943 -15.15204 -14.79551 -14.55962 -14.08235 -13.64820 -13.50466 -13.24500 -12.94367 -12.58952 -12.36990 -12.22970 -12.05668 -11.95403 -11.74152 -11.61438 -11.37151 -11.04734 -10.98917 -10.85495 -10.76635 -10.63950 -10.42030 -10.28943 -9.97334 -9.62211 -9.20029 -8.48144 -8.43282 -7.80849 -7.24810 -6.06372 -4.07941 1.44302 1.67660 3.19818 3.30110 3.34913 3.37077 3.70922 4.21451 4.39314 4.83468 4.92756 5.08620 5.11147 5.12476 5.17205 5.27980 5.31576 5.36458 5.37670 5.48111 5.50934 5.72685 5.75640 5.82629 5.95407 5.99545 6.05772 6.06933 6.25634 6.31747 6.36598 6.44543 6.53774 6.60472 6.68260 6.74768 6.98471 7.24570 7.31500 7.45453 7.77114 7.82438 8.05234 8.15961 8.51042 8.99256 9.56274 11.04323 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.005766 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.861926 B = 4854.891686 C = 6484.818444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.128 3.872 4 C -0.219 4.219 5 C -0.052 4.052 6 C -0.122 4.122 7 C 0.152 3.848 8 C -0.171 4.171 9 O -0.326 6.326 10 C 0.120 3.880 11 C -0.167 4.167 12 C -0.138 4.138 13 C 0.043 3.957 14 N -0.539 5.539 15 C 0.199 3.801 16 C -0.508 4.508 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.104 3.896 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.031 0.969 40 H -0.008 1.008 41 H 0.262 0.738 42 H 0.037 0.963 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 -15.907 -3.335 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.083 3.917 4 C -0.238 4.238 5 C -0.071 4.071 6 C -0.123 4.123 7 C 0.107 3.893 8 C -0.190 4.190 9 O -0.243 6.243 10 C 0.083 3.917 11 C -0.225 4.225 12 C -0.196 4.196 13 C -0.086 4.086 14 N -0.263 5.263 15 C 0.074 3.926 16 C -0.547 4.547 17 H 0.082 0.918 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.024 4.024 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.009 0.991 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.113 -16.142 -3.063 16.566 hybrid contribution -0.775 1.104 -0.255 1.373 sum -2.888 -15.038 -3.319 15.668 Atomic orbital electron populations 1.23003 0.78703 1.03465 1.01422 1.86020 1.21103 1.27207 1.89176 1.18642 0.91571 0.83951 0.97547 1.21196 0.99721 0.92246 1.10599 1.20742 0.93492 0.97099 0.95746 1.20457 0.93819 0.95756 1.02276 1.17936 0.83309 0.91138 0.96891 1.20258 0.91407 0.97718 1.09653 1.86272 1.16262 1.84735 1.37061 1.21619 0.93491 0.93431 0.83172 1.22364 1.02241 1.00106 0.97751 1.21810 0.93901 1.01449 1.02431 1.22023 0.92274 0.93131 1.01179 1.60997 1.16783 1.18113 1.30365 1.19716 0.97760 0.79568 0.95521 1.21105 0.92405 0.93870 1.47315 0.91842 1.24968 0.96959 0.96958 0.95529 1.69941 1.29331 1.05746 1.48668 0.86588 0.84506 0.77788 0.78705 1.20177 1.21348 1.20259 1.21083 0.97784 0.92959 0.90538 0.92758 0.88614 0.92663 0.85683 0.85063 0.85228 0.93028 0.91490 0.90106 0.91856 0.90720 0.91827 0.90361 0.95444 0.95074 0.99060 0.92825 0.94536 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.25 10.49 -19.42 -0.20 -4.46 16 3 C 0.13 1.89 6.68 -39.22 -0.26 1.63 16 4 C -0.22 -3.14 9.04 -39.35 -0.36 -3.50 16 5 C -0.05 -0.85 9.69 -39.66 -0.38 -1.24 16 6 C -0.12 -2.20 4.71 -104.21 -0.49 -2.69 16 7 C 0.15 2.62 3.99 -39.39 -0.16 2.46 16 8 C -0.17 -2.70 9.88 -39.24 -0.39 -3.09 16 9 O -0.33 -5.67 9.64 -19.86 -0.19 -5.86 16 10 C 0.12 1.92 1.08 -91.45 -0.10 1.82 16 11 C -0.17 -2.63 7.53 37.16 0.28 -2.35 16 12 C -0.14 -1.74 8.77 37.16 0.33 -1.41 16 13 C 0.04 0.79 3.91 -5.13 -0.02 0.77 16 14 N -0.54 -11.50 3.65 -238.85 -0.87 -12.37 16 15 C 0.20 5.05 4.71 -4.98 -0.02 5.03 16 16 C -0.51 -13.80 8.11 -34.44 -0.28 -14.08 16 17 H 0.06 1.70 7.33 -52.49 -0.38 1.31 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 20 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.10 2.10 4.99 -4.58 -0.02 2.08 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.46 7.65 -51.93 -0.40 0.07 16 28 H 0.13 1.46 6.28 -52.49 -0.33 1.13 16 29 H 0.13 2.05 7.99 -52.49 -0.42 1.63 16 30 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.48 6.01 -51.93 -0.31 1.17 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.40 7.74 -51.93 -0.40 1.00 16 38 H 0.03 0.52 7.89 -51.93 -0.41 0.11 16 39 H 0.03 0.84 7.83 -51.93 -0.41 0.44 16 40 H -0.01 -0.23 8.14 -51.93 -0.42 -0.65 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 43 H 0.10 2.08 6.26 -51.93 -0.32 1.75 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -30.10 340.04 -8.11 -38.21 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.70 Total: 0.43 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.98 Total: -11.82 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.14 Total: -37.78 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.40 Total: -10.32 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.10 -8.11 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421042111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.714 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds