Wall clock time and date at job start Tue Mar 31 2020 07:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99850 * 2 1 4 4 C 1.38786 * 119.93623 * 359.97438 * 3 2 1 5 5 C 1.38305 * 120.01681 * 180.43360 * 4 3 2 6 6 C 1.37969 * 119.71894 * 0.02562 * 5 4 3 7 7 C 1.38255 * 120.63347 * 359.14768 * 6 5 4 8 8 C 1.38661 * 119.93325 * 180.02562 * 3 2 1 9 9 O 1.36039 * 120.10053 * 181.81091 * 7 6 5 10 10 C 1.43320 * 115.33253 * 68.99106 * 9 7 6 11 11 C 1.52999 * 109.23031 * 34.91639 * 10 9 7 12 12 C 1.53000 * 109.23342 * 154.28955 * 10 9 7 13 13 C 1.51364 * 110.69898 * 274.60507 * 10 9 7 14 14 N 1.46021 * 113.61346 * 65.01999 * 13 10 9 15 15 C 1.46897 * 110.99844 * 165.92136 * 14 13 10 16 16 C 1.50702 * 109.47152 * 189.99490 * 15 14 13 17 17 H 1.08002 * 119.99885 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00390 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99702 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46937 * 60.00959 * 20 18 16 22 22 H 1.48499 * 109.47066 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47413 * 300.00902 * 20 18 16 24 24 C 1.46693 * 112.61443 * 291.07434 * 14 13 10 25 25 H 1.08998 * 109.47276 * 60.00019 * 1 2 3 26 26 H 1.09005 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46853 * 299.99280 * 1 2 3 28 28 H 1.08000 * 119.99401 * 0.43102 * 4 3 2 29 29 H 1.08000 * 120.14348 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.16938 * 359.92365 * 8 3 2 31 31 H 1.08996 * 109.47119 * 60.00169 * 11 10 9 32 32 H 1.09000 * 109.47317 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47344 * 299.99950 * 11 10 9 34 34 H 1.09002 * 109.47018 * 60.00282 * 12 10 9 35 35 H 1.09001 * 109.46854 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.47041 * 300.00202 * 12 10 9 37 37 H 1.08992 * 108.65743 * 186.08563 * 13 10 9 38 38 H 1.09000 * 108.65381 * 304.08863 * 13 10 9 39 39 H 1.09000 * 109.47398 * 310.00363 * 15 14 13 40 40 H 1.09003 * 109.46948 * 70.00083 * 15 14 13 41 41 H 0.97001 * 120.00248 * 179.97438 * 19 18 16 42 42 H 1.08991 * 109.58556 * 324.69081 * 24 14 13 43 43 H 1.09002 * 109.57799 * 204.27943 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2887 2.3740 -0.0005 5 6 1.9148 3.6072 -0.0096 6 6 3.2928 3.6746 -0.0186 7 6 4.0547 2.5210 -0.0010 8 6 3.4307 1.2819 -0.0005 9 8 5.4125 2.6005 0.0271 10 6 5.9723 3.1018 1.2474 11 6 5.1190 2.6276 2.4255 12 6 7.3953 2.5630 1.4079 13 6 6.0104 4.6149 1.2367 14 7 4.6877 5.2331 1.2116 15 6 4.7690 6.6636 1.5357 16 6 3.3804 7.2117 1.7415 17 1 2.5232 6.5623 1.6418 18 6 3.2043 8.5421 2.0579 19 7 4.2480 9.3328 2.1798 20 14 1.4830 9.2214 2.3136 21 1 0.8259 8.4969 3.4310 22 1 1.5652 10.6674 2.6412 23 1 0.6897 9.0399 1.0716 24 6 3.9902 5.0214 -0.0614 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.2103 2.3161 0.0061 29 1 1.3276 4.5136 -0.0096 30 1 4.0206 0.3772 0.0003 31 1 5.1065 1.5379 2.4497 32 1 5.5417 3.0064 3.3561 33 1 4.1012 3.0001 2.3102 34 1 8.0046 2.8895 0.5651 35 1 7.8247 2.9417 2.3354 36 1 7.3701 1.4737 1.4377 37 1 6.5381 4.9568 2.1270 38 1 6.5635 4.9435 0.3568 39 1 5.3512 6.7970 2.4475 40 1 5.2516 7.1951 0.7155 41 1 4.1241 10.2688 2.4021 42 1 4.7105 5.0340 -0.8793 43 1 3.2525 5.8101 -0.2094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421042111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:58 Heat of formation + Delta-G solvation = -59.241935 kcal Electronic energy + Delta-G solvation = -24390.995997 eV Core-core repulsion = 21015.271113 eV Total energy + Delta-G solvation = -3375.724884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95132 -40.39469 -37.84773 -37.79327 -34.89614 -34.15019 -32.14132 -30.86888 -29.25504 -28.56201 -28.04357 -26.93365 -25.68138 -23.70641 -23.21790 -21.71219 -21.05072 -19.05030 -18.46919 -17.73090 -17.28576 -16.88852 -16.67436 -16.59569 -16.35488 -16.01571 -15.48506 -15.13929 -14.96905 -14.56425 -14.27079 -14.06563 -13.92957 -13.30312 -13.22222 -13.12427 -13.01022 -12.92711 -12.86689 -12.79790 -12.57473 -12.33536 -12.21098 -12.07342 -11.97044 -11.75601 -11.50787 -11.36695 -10.87246 -10.61477 -9.65881 -9.11365 -8.95924 -8.19914 -6.29641 0.21599 0.42035 1.41476 1.44201 1.51908 2.15391 2.39814 2.54942 2.92859 3.13052 3.33388 3.80531 3.89008 3.95596 3.98187 4.07265 4.09057 4.18753 4.34762 4.45217 4.45980 4.54793 4.64397 4.64900 4.72962 4.75403 4.79286 4.83319 4.88855 4.98811 5.08211 5.12799 5.19619 5.22533 5.24745 5.35622 5.43084 5.52623 5.64572 5.69115 6.03761 6.26263 6.39752 6.55641 6.61170 6.85194 7.39651 8.91042 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.005766 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.861926 B = 4854.891686 C = 6484.818444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.136 3.864 4 C -0.211 4.211 5 C -0.060 4.060 6 C -0.146 4.146 7 C 0.143 3.857 8 C -0.176 4.176 9 O -0.335 6.335 10 C 0.120 3.880 11 C -0.160 4.160 12 C -0.133 4.133 13 C 0.040 3.960 14 N -0.538 5.538 15 C 0.214 3.786 16 C -0.519 4.519 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.111 3.889 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.063 0.937 28 H 0.156 0.844 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.018 0.982 39 H 0.008 0.992 40 H -0.040 1.040 41 H 0.264 0.736 42 H 0.026 0.974 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -18.111 -3.072 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.090 3.910 4 C -0.229 4.229 5 C -0.078 4.078 6 C -0.147 4.147 7 C 0.099 3.901 8 C -0.195 4.195 9 O -0.253 6.253 10 C 0.083 3.917 11 C -0.217 4.217 12 C -0.190 4.190 13 C -0.088 4.088 14 N -0.262 5.262 15 C 0.088 3.912 16 C -0.558 4.558 17 H 0.083 0.917 18 C -0.193 4.193 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.016 4.016 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.081 0.919 28 H 0.174 0.826 29 H 0.151 0.849 30 H 0.159 0.841 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.026 0.974 40 H -0.022 1.022 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.878 -18.381 -2.812 18.995 hybrid contribution -0.264 1.700 -0.367 1.759 sum -4.142 -16.681 -3.179 17.480 Atomic orbital electron populations 1.23374 0.76286 1.05678 1.02350 1.86027 1.23551 1.26140 1.88650 1.18717 0.91437 0.84790 0.96027 1.21432 1.01245 0.91110 1.09155 1.20847 0.92847 0.98265 0.95869 1.20292 0.94700 0.94580 1.05122 1.18020 0.83233 0.91477 0.97400 1.20365 0.92217 0.97343 1.09571 1.86268 1.16549 1.84608 1.37843 1.21735 0.95624 0.91287 0.83031 1.22278 1.00490 1.01135 0.97805 1.21821 0.91336 1.02478 1.03373 1.22173 0.90587 0.95324 1.00750 1.60980 1.18555 1.15382 1.31295 1.19375 0.96595 0.81985 0.93244 1.21374 0.92981 0.94317 1.47096 0.91703 1.25861 1.01169 0.97235 0.95046 1.70075 1.31708 1.06084 1.49580 0.85488 0.79410 0.76978 0.79090 1.19352 1.21024 1.19068 1.20934 0.97031 0.94160 0.89519 0.91607 0.85966 0.91856 0.82630 0.84919 0.84071 0.91198 0.90795 0.92853 0.91712 0.89066 0.90054 0.90229 0.96410 0.97383 1.02197 0.92704 0.95561 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.69 10.49 -92.40 -0.97 -8.66 16 3 C 0.14 3.71 6.68 22.50 0.15 3.86 16 4 C -0.21 -5.58 9.04 22.42 0.20 -5.38 16 5 C -0.06 -1.91 9.69 22.22 0.22 -1.70 16 6 C -0.15 -5.33 4.71 -19.60 -0.09 -5.42 16 7 C 0.14 4.88 3.99 22.39 0.09 4.97 16 8 C -0.18 -5.26 9.88 22.49 0.22 -5.04 16 9 O -0.33 -11.53 9.64 -93.99 -0.91 -12.44 16 10 C 0.12 3.78 1.08 -11.33 -0.01 3.77 16 11 C -0.16 -4.87 7.53 71.98 0.54 -4.33 16 12 C -0.13 -3.10 8.77 71.98 0.63 -2.47 16 13 C 0.04 1.54 3.91 85.93 0.34 1.87 16 14 N -0.54 -24.00 3.65 -909.59 -3.32 -27.32 16 15 C 0.21 11.45 4.71 85.56 0.40 11.85 16 16 C -0.52 -29.04 8.11 25.60 0.21 -28.83 16 17 H 0.06 3.54 7.33 -2.91 -0.02 3.51 16 18 C 0.01 0.29 5.46 84.66 0.46 0.75 16 19 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 20 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 C 0.11 4.70 4.99 85.92 0.43 5.13 16 25 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 26 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.06 0.82 7.65 -2.39 -0.02 0.80 16 28 H 0.16 3.08 6.28 -2.91 -0.02 3.06 16 29 H 0.13 4.12 7.99 -2.91 -0.02 4.09 16 30 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 1.93 6.01 -2.39 -0.01 1.92 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 2.95 7.74 -2.39 -0.02 2.93 16 38 H 0.02 0.70 7.89 -2.39 -0.02 0.68 16 39 H 0.01 0.46 7.83 -2.39 -0.02 0.44 16 40 H -0.04 -2.32 8.14 -2.39 -0.02 -2.34 16 41 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.03 1.13 7.75 -2.39 -0.02 1.11 16 43 H 0.08 3.49 6.26 -2.39 -0.01 3.48 16 Total: -1.00 -66.34 340.04 3.00 -63.34 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.99 Total: 14.58 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 4.90 Total: -19.60 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -3.04 Total: -82.88 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.88 Total: -21.10 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -66.34 3.00 -63.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421042111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.102 kcal (2) G-P(sol) polarization free energy of solvation -66.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds