Wall clock time and date at job start Tue Mar 31 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38289 * 119.93791 * 2 1 4 4 C 1.38125 * 120.05202 * 180.25765 * 3 2 1 5 5 C 1.38755 * 119.93999 * 359.48967 * 4 3 2 6 6 O 1.35906 * 120.05296 * 180.27973 * 5 4 3 7 7 C 1.42901 * 117.00155 * 359.97438 * 6 5 4 8 8 C 1.52991 * 109.47372 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47245 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47377 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99870 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00512 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00473 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47495 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00235 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00250 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00128 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46922 * 89.99911 * 18 16 14 20 20 H 1.48499 * 109.47269 * 210.00135 * 18 16 14 21 21 H 1.48499 * 109.47112 * 330.00356 * 18 16 14 22 22 C 1.38709 * 119.89505 * 0.25905 * 5 4 3 23 23 C 1.38167 * 119.93745 * 359.97438 * 22 5 4 24 24 C 1.50702 * 119.96727 * 180.02562 * 23 22 5 25 25 H 1.08995 * 109.47080 * 270.24804 * 1 2 3 26 26 H 1.08993 * 109.47243 * 30.25404 * 1 2 3 27 27 H 1.09001 * 109.46983 * 150.25353 * 1 2 3 28 28 H 1.07995 * 119.98087 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.03152 * 179.77429 * 4 3 2 30 30 H 1.09003 * 109.47208 * 300.00726 * 7 6 5 31 31 H 1.09006 * 109.47043 * 60.00389 * 7 6 5 32 32 H 1.09003 * 109.47447 * 300.00457 * 8 7 6 33 33 H 1.09003 * 109.47081 * 60.00580 * 8 7 6 34 34 H 1.08998 * 109.47343 * 300.00082 * 9 8 7 35 35 H 1.09006 * 109.47102 * 60.00309 * 9 8 7 36 36 H 0.97003 * 119.99537 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.47417 * 300.00429 * 13 12 10 38 38 H 1.09006 * 109.46755 * 60.00044 * 13 12 10 39 39 H 0.96995 * 120.00592 * 179.97438 * 17 16 14 40 40 H 1.07993 * 120.02876 * 180.02562 * 22 5 4 41 41 H 1.08996 * 109.47216 * 90.00423 * 24 23 22 42 42 H 1.09001 * 109.47177 * 210.00403 * 24 23 22 43 43 H 1.09001 * 109.47352 * 329.99926 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 -0.0054 5 6 4.2734 0.0002 -0.0001 6 8 5.6324 0.0002 0.0004 7 6 6.2812 1.2735 -0.0053 8 6 7.7979 1.0731 -0.0045 9 6 8.4924 2.4364 -0.0113 10 6 9.9865 2.2390 -0.0098 11 8 10.4501 1.1183 -0.0044 12 7 10.8075 3.3079 -0.0145 13 6 12.2598 3.1160 -0.0137 14 6 12.9440 4.4587 -0.0202 15 1 12.3557 5.3645 -0.0242 16 6 14.3208 4.5310 -0.0201 17 7 15.0372 3.4281 -0.0149 18 14 15.1688 6.1954 -0.0275 19 1 15.3930 6.6428 1.3705 20 1 16.4741 6.0829 -0.7267 21 1 14.3134 7.1837 -0.7323 22 6 3.5788 -1.2005 0.0052 23 6 2.1971 -1.1978 0.0057 24 6 1.4418 -2.5019 0.0120 25 1 -0.3633 0.0044 1.0276 26 1 -0.3633 0.8876 -0.5177 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6559 2.1329 0.0004 29 1 4.1171 2.1372 -0.0091 30 1 5.9885 1.8264 -0.8979 31 1 5.9880 1.8346 0.8820 32 1 8.0909 0.5200 0.8879 33 1 8.0908 0.5122 -0.8921 34 1 8.1995 2.9890 -0.9039 35 1 8.1997 2.9977 0.8761 36 1 10.4367 4.2042 -0.0185 37 1 12.5528 2.5629 0.8787 38 1 12.5527 2.5551 -0.9013 39 1 16.0058 3.4788 -0.0152 40 1 4.1175 -2.1365 0.0097 41 1 1.2600 -2.8115 1.0411 42 1 0.4894 -2.3726 -0.5022 43 1 2.0296 -3.2647 -0.4986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427635655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:39 Heat of formation + Delta-G solvation = -80.235044 kcal Electronic energy + Delta-G solvation = -21457.536289 eV Core-core repulsion = 18080.901075 eV Total energy + Delta-G solvation = -3376.635213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45162 -38.95190 -38.18790 -34.36761 -33.77871 -32.86042 -32.34059 -32.01145 -28.57183 -27.61727 -26.45108 -25.98711 -23.15491 -22.42528 -21.54570 -20.60679 -19.62442 -17.97091 -17.11704 -16.47750 -16.41258 -15.65770 -15.46120 -15.13331 -15.07406 -14.57099 -14.45281 -14.13188 -13.84741 -13.47700 -13.39539 -13.11594 -12.87516 -12.50050 -12.28856 -12.24936 -12.10972 -11.96670 -11.63763 -11.52009 -11.44136 -11.12004 -10.97877 -10.88544 -10.88097 -10.58631 -10.32900 -9.41215 -9.08275 -9.03714 -8.75025 -8.22504 -7.89930 -6.17830 -4.25049 1.07213 1.19860 2.97363 3.23124 3.29269 3.31649 3.35254 3.47279 4.10466 4.36042 4.50292 4.52097 4.72193 4.82903 4.83938 4.85430 4.97792 5.02946 5.09697 5.18117 5.18741 5.26882 5.34602 5.36744 5.43393 5.47057 5.52348 5.54097 5.71787 5.81067 5.84932 6.09013 6.09620 6.16189 6.30014 6.39472 6.58650 7.27895 7.29843 7.42121 7.50500 7.64869 7.95814 8.60884 8.76324 9.08640 9.41705 10.92361 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.051761 B = 0.001916 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.813912 B =14611.707234 C =15110.865501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.132 4.132 3 C -0.077 4.077 4 C -0.212 4.212 5 C 0.134 3.866 6 O -0.312 6.312 7 C 0.061 3.939 8 C -0.102 4.102 9 C -0.138 4.138 10 C 0.497 3.503 11 O -0.556 6.556 12 N -0.713 5.713 13 C 0.248 3.752 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.152 4.152 23 C -0.049 4.049 24 C -0.118 4.118 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.391 0.609 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.130 0.870 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.522 -4.892 0.045 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.095 4.095 4 C -0.231 4.231 5 C 0.088 3.912 6 O -0.226 6.226 7 C -0.014 4.014 8 C -0.140 4.140 9 C -0.178 4.178 10 C 0.282 3.718 11 O -0.435 6.435 12 N -0.361 5.361 13 C 0.128 3.872 14 C -0.583 4.583 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.171 4.171 23 C -0.049 4.049 24 C -0.174 4.174 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.223 0.777 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -28.806 -5.918 0.044 29.408 hybrid contribution 0.483 1.710 0.019 1.777 sum -28.322 -4.208 0.063 28.633 Atomic orbital electron populations 1.20771 0.91288 1.02595 1.02064 1.19642 0.96041 0.92527 1.05017 1.20795 0.93295 0.97539 0.97837 1.21267 0.95342 0.97218 1.09236 1.19018 0.82610 0.94032 0.95515 1.86091 1.15957 1.32353 1.88166 1.22904 0.93577 0.83660 1.01296 1.21217 0.90088 0.97317 1.05400 1.21534 0.93858 0.98343 1.04092 1.20364 0.88347 0.85504 0.77592 1.90674 1.77918 1.24005 1.50900 1.46473 1.09623 1.07707 1.72343 1.19112 0.73068 0.97301 0.97761 1.21230 0.91817 0.91928 1.53291 0.91892 1.24962 0.97245 0.97161 0.94691 1.69973 1.06362 1.27082 1.48826 0.86404 0.78933 0.83286 0.78217 1.20460 1.20985 1.19766 1.20298 0.93047 0.96516 1.07244 1.19523 0.92536 0.95107 0.97763 1.20877 1.00073 0.93881 1.02577 0.91528 0.91884 0.91359 0.85905 0.85380 0.91950 0.91950 0.89992 0.89996 0.89166 0.89176 0.77687 0.95531 0.95527 0.92424 0.85196 0.90886 0.90958 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.60 36.01 0.35 -0.31 16 2 C -0.13 -1.15 5.88 -104.60 -0.62 -1.76 16 3 C -0.08 -0.68 9.69 -39.60 -0.38 -1.07 16 4 C -0.21 -2.14 9.04 -39.43 -0.36 -2.49 16 5 C 0.13 1.57 6.69 -39.22 -0.26 1.31 16 6 O -0.31 -4.01 10.14 -19.44 -0.20 -4.20 16 7 C 0.06 0.65 4.74 37.15 0.18 0.83 16 8 C -0.10 -1.34 4.87 -26.74 -0.13 -1.47 16 9 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 10 C 0.50 9.68 7.83 -10.98 -0.09 9.60 16 11 O -0.56 -13.32 15.98 5.55 0.09 -13.24 16 12 N -0.71 -14.81 5.55 -61.47 -0.34 -15.15 16 13 C 0.25 6.60 5.43 -5.20 -0.03 6.57 16 14 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 15 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 22 C -0.15 -1.64 9.64 -39.43 -0.38 -2.02 16 23 C -0.05 -0.45 5.88 -104.65 -0.62 -1.06 16 24 C -0.12 -0.74 9.60 36.01 0.35 -0.40 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 27 H 0.07 0.34 5.94 -51.93 -0.31 0.03 16 28 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 30 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 32 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.37 5.94 -51.93 -0.31 0.06 16 43 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -33.29 360.21 -8.55 -41.84 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.68 Total: 2.59 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.57 Total: -7.66 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.40 Total: -40.55 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.11 Total: -17.44 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.29 -8.55 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427635655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.394 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds