Wall clock time and date at job start Tue Mar 31 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38289 * 119.93791 * 2 1 4 4 C 1.38125 * 120.05202 * 180.25765 * 3 2 1 5 5 C 1.38755 * 119.93999 * 359.48967 * 4 3 2 6 6 O 1.35906 * 120.05296 * 180.27973 * 5 4 3 7 7 C 1.42901 * 117.00155 * 359.97438 * 6 5 4 8 8 C 1.52991 * 109.47372 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47245 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47377 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99870 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00512 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00473 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47495 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00235 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00250 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00128 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46922 * 89.99911 * 18 16 14 20 20 H 1.48499 * 109.47269 * 210.00135 * 18 16 14 21 21 H 1.48499 * 109.47112 * 330.00356 * 18 16 14 22 22 C 1.38709 * 119.89505 * 0.25905 * 5 4 3 23 23 C 1.38167 * 119.93745 * 359.97438 * 22 5 4 24 24 C 1.50702 * 119.96727 * 180.02562 * 23 22 5 25 25 H 1.08995 * 109.47080 * 270.24804 * 1 2 3 26 26 H 1.08993 * 109.47243 * 30.25404 * 1 2 3 27 27 H 1.09001 * 109.46983 * 150.25353 * 1 2 3 28 28 H 1.07995 * 119.98087 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.03152 * 179.77429 * 4 3 2 30 30 H 1.09003 * 109.47208 * 300.00726 * 7 6 5 31 31 H 1.09006 * 109.47043 * 60.00389 * 7 6 5 32 32 H 1.09003 * 109.47447 * 300.00457 * 8 7 6 33 33 H 1.09003 * 109.47081 * 60.00580 * 8 7 6 34 34 H 1.08998 * 109.47343 * 300.00082 * 9 8 7 35 35 H 1.09006 * 109.47102 * 60.00309 * 9 8 7 36 36 H 0.97003 * 119.99537 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.47417 * 300.00429 * 13 12 10 38 38 H 1.09006 * 109.46755 * 60.00044 * 13 12 10 39 39 H 0.96995 * 120.00592 * 179.97438 * 17 16 14 40 40 H 1.07993 * 120.02876 * 180.02562 * 22 5 4 41 41 H 1.08996 * 109.47216 * 90.00423 * 24 23 22 42 42 H 1.09001 * 109.47177 * 210.00403 * 24 23 22 43 43 H 1.09001 * 109.47352 * 329.99926 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 -0.0054 5 6 4.2734 0.0002 -0.0001 6 8 5.6324 0.0002 0.0004 7 6 6.2812 1.2735 -0.0053 8 6 7.7979 1.0731 -0.0045 9 6 8.4924 2.4364 -0.0113 10 6 9.9865 2.2390 -0.0098 11 8 10.4501 1.1183 -0.0044 12 7 10.8075 3.3079 -0.0145 13 6 12.2598 3.1160 -0.0137 14 6 12.9440 4.4587 -0.0202 15 1 12.3557 5.3645 -0.0242 16 6 14.3208 4.5310 -0.0201 17 7 15.0372 3.4281 -0.0149 18 14 15.1688 6.1954 -0.0275 19 1 15.3930 6.6428 1.3705 20 1 16.4741 6.0829 -0.7267 21 1 14.3134 7.1837 -0.7323 22 6 3.5788 -1.2005 0.0052 23 6 2.1971 -1.1978 0.0057 24 6 1.4418 -2.5019 0.0120 25 1 -0.3633 0.0044 1.0276 26 1 -0.3633 0.8876 -0.5177 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6559 2.1329 0.0004 29 1 4.1171 2.1372 -0.0091 30 1 5.9885 1.8264 -0.8979 31 1 5.9880 1.8346 0.8820 32 1 8.0909 0.5200 0.8879 33 1 8.0908 0.5122 -0.8921 34 1 8.1995 2.9890 -0.9039 35 1 8.1997 2.9977 0.8761 36 1 10.4367 4.2042 -0.0185 37 1 12.5528 2.5629 0.8787 38 1 12.5527 2.5551 -0.9013 39 1 16.0058 3.4788 -0.0152 40 1 4.1175 -2.1365 0.0097 41 1 1.2600 -2.8115 1.0411 42 1 0.4894 -2.3726 -0.5022 43 1 2.0296 -3.2647 -0.4986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427635655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:38 Heat of formation + Delta-G solvation = -101.596005 kcal Electronic energy + Delta-G solvation = -21458.462569 eV Core-core repulsion = 18080.901075 eV Total energy + Delta-G solvation = -3377.561494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.21654 -40.54636 -38.99950 -36.21784 -34.94365 -34.33706 -33.51472 -32.72227 -29.96359 -28.71401 -27.55944 -26.73896 -24.80053 -23.42030 -22.65148 -21.36054 -21.25470 -19.06007 -18.58235 -17.61445 -17.42263 -17.03967 -16.94757 -16.37536 -16.23714 -15.96011 -15.22497 -15.14061 -14.77203 -14.68676 -14.37091 -14.10533 -13.95138 -13.81026 -13.55704 -13.24765 -13.18612 -12.86237 -12.83213 -12.74708 -12.69708 -12.37833 -12.22829 -12.05022 -12.03429 -11.61459 -11.49372 -11.43950 -10.81230 -10.79336 -9.83505 -9.72930 -8.95061 -8.29900 -6.46934 0.37755 0.47772 1.42908 1.45476 1.56715 1.77519 2.08144 2.35384 2.71863 2.77157 3.04952 3.74254 3.87737 3.91237 3.91631 4.03845 4.11226 4.23224 4.35494 4.37832 4.39761 4.45113 4.52904 4.67070 4.74857 4.82097 4.85887 4.96322 5.04297 5.04491 5.11861 5.18578 5.22929 5.23417 5.27980 5.43064 5.46773 5.48629 5.69480 5.75245 5.84181 5.93745 6.50447 6.64693 6.91053 7.22863 7.51088 8.82361 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.051761 B = 0.001916 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.813912 B =14611.707234 C =15110.865501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C -0.083 4.083 4 C -0.218 4.218 5 C 0.108 3.892 6 O -0.339 6.339 7 C 0.066 3.934 8 C -0.099 4.099 9 C -0.119 4.119 10 C 0.491 3.509 11 O -0.609 6.609 12 N -0.708 5.708 13 C 0.263 3.737 14 C -0.556 4.556 15 H 0.086 0.914 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.987 3.013 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.254 1.254 22 C -0.174 4.174 23 C -0.057 4.057 24 C -0.117 4.117 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.411 0.589 37 H -0.014 1.014 38 H -0.014 1.014 39 H 0.268 0.732 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.351 -2.094 0.016 32.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.137 4.137 3 C -0.101 4.101 4 C -0.237 4.237 5 C 0.063 3.937 6 O -0.253 6.253 7 C -0.009 4.009 8 C -0.137 4.137 9 C -0.158 4.158 10 C 0.279 3.721 11 O -0.491 6.491 12 N -0.357 5.357 13 C 0.140 3.860 14 C -0.594 4.594 15 H 0.104 0.896 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.810 3.190 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.178 1.178 22 C -0.193 4.193 23 C -0.057 4.057 24 C -0.173 4.173 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.164 0.836 29 H 0.162 0.838 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.247 0.753 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.077 0.923 40 H 0.143 0.857 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -31.698 -3.092 0.015 31.848 hybrid contribution 1.290 0.733 0.031 1.484 sum -30.408 -2.359 0.047 30.499 Atomic orbital electron populations 1.20829 0.89197 1.03668 1.02906 1.20061 0.97671 0.92259 1.03758 1.21157 0.93084 0.98727 0.97083 1.21492 0.96024 0.97142 1.09022 1.19268 0.82160 0.95100 0.97207 1.86036 1.16974 1.33533 1.88793 1.22868 0.91314 0.83425 1.03251 1.21119 0.92339 0.97017 1.03240 1.21497 0.87792 0.98949 1.07576 1.21588 0.91079 0.84094 0.75362 1.90655 1.79482 1.26166 1.52816 1.46206 1.07396 1.09414 1.72734 1.18545 0.76784 0.96681 0.93971 1.21642 0.92459 0.92473 1.52846 0.89577 1.26109 0.98214 1.01626 0.93858 1.70144 1.06800 1.30124 1.49997 0.85126 0.77464 0.77839 0.78595 1.19602 1.21056 1.17775 1.20503 0.94079 0.96383 1.08331 1.19866 0.92069 0.96684 0.97120 1.20935 1.00440 0.92594 1.03341 0.90672 0.90813 0.90361 0.83555 0.83808 0.89894 0.89890 0.92293 0.92297 0.85460 0.85468 0.75317 0.99647 0.99637 0.92274 0.85735 0.90064 0.89358 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.60 71.24 0.68 -0.31 16 2 C -0.14 -2.12 5.88 -19.85 -0.12 -2.23 16 3 C -0.08 -1.29 9.69 22.25 0.22 -1.08 16 4 C -0.22 -4.03 9.04 22.37 0.20 -3.82 16 5 C 0.11 2.49 6.69 22.51 0.15 2.64 16 6 O -0.34 -8.75 10.14 -92.49 -0.94 -9.68 16 7 C 0.07 1.31 4.74 71.98 0.34 1.65 16 8 C -0.10 -2.56 4.87 30.59 0.15 -2.41 16 9 C -0.12 -2.80 5.70 29.85 0.17 -2.63 16 10 C 0.49 19.21 7.83 87.66 0.69 19.90 16 11 O -0.61 -30.65 15.98 -3.04 -0.05 -30.70 16 12 N -0.71 -29.38 5.55 -466.79 -2.59 -31.97 16 13 C 0.26 14.57 5.43 85.63 0.46 15.03 16 14 C -0.56 -30.25 9.28 25.60 0.24 -30.01 16 15 H 0.09 4.18 7.60 -2.91 -0.02 4.15 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 18 Si 0.99 42.21 29.54 68.60 2.03 44.24 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.17 -3.80 9.64 22.37 0.22 -3.59 16 23 C -0.06 -0.99 5.88 -19.88 -0.12 -1.11 16 24 C -0.12 -1.32 9.60 71.24 0.68 -0.64 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.52 8.09 -2.39 -0.02 0.51 16 27 H 0.08 0.55 5.94 -2.39 -0.01 0.54 16 28 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 29 H 0.14 2.05 6.30 -2.91 -0.02 2.03 16 30 H 0.08 1.30 7.66 -2.39 -0.02 1.28 16 31 H 0.08 1.30 7.66 -2.38 -0.02 1.28 16 32 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 37 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.70 5.94 -2.39 -0.01 0.68 16 43 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 Total: -1.00 -77.26 360.21 3.40 -73.86 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.23 Total: 18.69 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.43 Total: -8.06 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -2.30 Total: -88.35 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.99 Total: -40.38 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -77.26 3.40 -73.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427635655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.737 kcal (2) G-P(sol) polarization free energy of solvation -77.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds