Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38292 * 119.94266 * 2 1 4 4 C 1.38122 * 120.05886 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.94029 * 0.02562 * 4 3 2 6 6 O 1.35903 * 120.05696 * 180.02562 * 5 4 3 7 7 C 1.42906 * 116.99515 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.46748 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46626 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46957 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99692 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00142 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99867 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.46922 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00371 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99795 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00253 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99916 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46797 * 90.00240 * 18 16 14 20 20 H 1.48500 * 109.47411 * 210.00445 * 18 16 14 21 21 H 1.48501 * 109.47147 * 330.00830 * 18 16 14 22 22 C 1.38716 * 119.89270 * 0.28427 * 5 4 3 23 23 C 1.50694 * 120.03095 * 179.72390 * 22 5 4 24 24 C 1.38162 * 119.93935 * 359.44148 * 22 5 4 25 25 H 1.09007 * 109.47139 * 90.00258 * 1 2 3 26 26 H 1.09001 * 109.46968 * 209.99583 * 1 2 3 27 27 H 1.08992 * 109.47750 * 330.00088 * 1 2 3 28 28 H 1.08002 * 119.97380 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.03247 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47490 * 59.99635 * 7 6 5 31 31 H 1.09001 * 109.47232 * 299.98989 * 7 6 5 32 32 H 1.08993 * 109.46955 * 299.99993 * 8 7 6 33 33 H 1.09000 * 109.47050 * 59.99822 * 8 7 6 34 34 H 1.08993 * 109.47839 * 299.99931 * 9 8 7 35 35 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 36 36 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 37 37 H 1.09004 * 109.47074 * 299.99559 * 13 12 10 38 38 H 1.09004 * 109.47714 * 59.99650 * 13 12 10 39 39 H 0.97002 * 120.00081 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.47540 * 89.99533 * 23 22 5 41 41 H 1.09002 * 109.47089 * 209.99801 * 23 22 5 42 42 H 1.09003 * 109.46931 * 329.99610 * 23 22 5 43 43 H 1.07997 * 119.97294 * 180.27980 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2011 0.0005 5 6 4.2734 0.0002 0.0005 6 8 5.6324 0.0002 0.0016 7 6 6.2811 1.2735 0.0032 8 6 7.7980 1.0731 0.0049 9 6 8.4924 2.4364 0.0060 10 6 9.9865 2.2390 0.0070 11 8 10.4501 1.1183 0.0073 12 7 10.8075 3.3079 0.0086 13 6 12.2598 3.1160 0.0089 14 6 12.9439 4.4587 0.0102 15 1 12.3557 5.3645 0.0110 16 6 14.3208 4.5309 0.0112 17 7 15.0371 3.4281 0.0107 18 14 15.1688 6.1954 0.0120 19 1 15.3925 6.6362 1.4123 20 1 16.4744 6.0862 -0.6871 21 1 14.3136 7.1870 -0.6884 22 6 3.5787 -1.2005 -0.0060 23 6 4.3304 -2.5066 -0.0123 24 6 2.1971 -1.1979 -0.0008 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6558 2.1329 -0.0004 29 1 4.1170 2.1372 0.0010 30 1 5.9875 1.8298 0.8934 31 1 5.9890 1.8313 -0.8866 32 1 8.0898 0.5155 0.8948 33 1 8.0919 0.5167 -0.8851 34 1 8.2006 2.9936 -0.8841 35 1 8.1986 2.9931 0.8958 36 1 10.4367 4.2042 0.0087 37 1 12.5523 2.5580 0.8985 38 1 12.5532 2.5599 -0.8815 39 1 16.0058 3.4789 0.0111 40 1 4.5112 -2.8268 1.0138 41 1 3.7404 -3.2628 -0.5303 42 1 5.2832 -2.3750 -0.5250 43 1 1.6558 -2.1324 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427635816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = -82.569832 kcal Electronic energy + Delta-G solvation = -21614.850851 eV Core-core repulsion = 18238.114394 eV Total energy + Delta-G solvation = -3376.736457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48794 -38.93728 -37.95343 -34.38554 -33.91134 -33.04779 -32.31884 -31.77137 -28.34342 -27.46003 -26.76876 -25.91208 -23.39612 -22.25013 -21.11254 -20.87706 -19.63465 -18.23305 -17.10138 -16.49668 -16.36518 -15.59327 -15.19817 -15.11101 -15.09409 -14.62848 -14.17217 -14.15759 -13.69207 -13.50754 -13.41836 -13.11577 -12.84096 -12.66616 -12.16997 -12.12278 -12.11056 -11.97473 -11.62465 -11.52538 -11.49071 -11.15527 -10.98107 -10.88886 -10.87049 -10.60320 -10.33109 -9.41474 -9.08612 -9.05413 -8.75287 -8.16682 -7.90248 -6.18092 -4.25259 1.08401 1.19063 2.98476 3.22936 3.29107 3.31474 3.34926 3.47302 4.10499 4.35950 4.50427 4.54636 4.65628 4.82647 4.85064 5.00981 5.02193 5.04276 5.14196 5.17899 5.29675 5.30910 5.36356 5.40893 5.44102 5.52554 5.54620 5.62869 5.67677 5.80286 6.02044 6.09249 6.11128 6.21194 6.30375 6.35763 6.60590 7.26995 7.29457 7.41801 7.50223 7.64642 7.95558 8.60611 8.76079 9.08313 9.41469 10.92086 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.042941 B = 0.002030 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.898325 B =13790.835543 C =14401.074341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.087 4.087 4 C -0.203 4.203 5 C 0.128 3.872 6 O -0.309 6.309 7 C 0.060 3.940 8 C -0.102 4.102 9 C -0.138 4.138 10 C 0.497 3.503 11 O -0.556 6.556 12 N -0.713 5.713 13 C 0.248 3.752 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.115 4.115 23 C -0.106 4.106 24 C -0.085 4.085 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.391 0.609 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.330 -4.873 -0.045 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.127 4.127 3 C -0.105 4.105 4 C -0.221 4.221 5 C 0.083 3.917 6 O -0.222 6.222 7 C -0.015 4.015 8 C -0.140 4.140 9 C -0.178 4.178 10 C 0.282 3.718 11 O -0.435 6.435 12 N -0.362 5.362 13 C 0.128 3.872 14 C -0.583 4.583 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.116 4.116 23 C -0.163 4.163 24 C -0.103 4.103 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.223 0.777 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.610 -5.900 -0.050 28.234 hybrid contribution 0.369 1.722 0.014 1.761 sum -27.241 -4.178 -0.036 27.560 Atomic orbital electron populations 1.20702 0.91186 1.02522 1.02054 1.19789 0.96098 0.93018 1.03825 1.20796 0.93292 0.97614 0.98777 1.21265 0.95353 0.97141 1.08389 1.18861 0.82657 0.93592 0.96625 1.86080 1.15843 1.32151 1.88164 1.22907 0.93587 0.83740 1.01260 1.21212 0.90083 0.97297 1.05373 1.21535 0.93865 0.98358 1.04083 1.20363 0.88345 0.85503 0.77590 1.90672 1.77920 1.23999 1.50905 1.46473 1.09627 1.07708 1.72341 1.19112 0.73066 0.97300 0.97757 1.21230 0.91814 0.91927 1.53305 0.91893 1.24963 0.97248 0.97161 0.94690 1.69972 1.06361 1.27082 1.48813 0.86407 0.78934 0.83290 0.78219 1.20460 1.20983 1.19763 1.19293 0.93255 0.93690 1.05339 1.20621 1.00277 0.93005 1.02401 1.20745 0.92382 0.97755 0.99404 0.91519 0.91768 0.91789 0.85979 0.85337 0.91987 0.91996 0.90000 0.90015 0.89187 0.89181 0.77687 0.95533 0.95531 0.92424 0.91347 0.91823 0.90850 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.13 -1.10 5.88 -104.60 -0.62 -1.71 16 3 C -0.09 -0.77 9.69 -39.60 -0.38 -1.16 16 4 C -0.20 -2.04 9.04 -39.43 -0.36 -2.39 16 5 C 0.13 1.49 6.66 -39.21 -0.26 1.23 16 6 O -0.31 -3.86 9.18 -19.43 -0.18 -4.04 16 7 C 0.06 0.64 4.74 37.16 0.18 0.81 16 8 C -0.10 -1.32 4.87 -26.73 -0.13 -1.45 16 9 C -0.14 -1.78 5.70 -27.88 -0.16 -1.93 16 10 C 0.50 9.64 7.83 -10.98 -0.09 9.55 16 11 O -0.56 -13.26 15.98 5.56 0.09 -13.17 16 12 N -0.71 -14.77 5.55 -61.47 -0.34 -15.11 16 13 C 0.25 6.59 5.43 -5.20 -0.03 6.56 16 14 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.88 -26.09 13.29 55.43 0.74 -25.36 16 18 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C -0.12 -1.23 5.89 -104.48 -0.62 -1.84 16 23 C -0.11 -0.99 9.79 36.00 0.35 -0.64 16 24 C -0.08 -0.77 9.35 -39.61 -0.37 -1.14 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 30 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 31 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 32 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.39 6.81 8.32 -40.82 -0.34 6.47 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 42 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -33.04 363.28 -8.65 -41.69 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.87 Total: 2.56 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.53 Total: -7.81 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.40 Total: -40.47 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.09 Total: -17.20 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.04 -8.65 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427635816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.881 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds